RchiOBHm_Chr5g0025811

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000354
Physical Location & Seq
Forward (+)
19768132 .. 19768479
348 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30542

Sequence Viewer

Length: 348 bp
ATGTCTCCCTTTAAAGTCCTTGGTTATGTTGTGGAACCAAAAACACTAATCCTTGTTAATGAGTGGGCAATCTCAAGAGATCCAAAAAGTTGGAAAGATCTAGAAGAGTTTATTCCAGAAAGGTTTGATCATAGCTCTGTGGATTTTAAAGGGCAACAATTTGAGTTTTTTTTTCTATTTAGTGCTGGTCGGAGAATGTGTCCGGGGATCTATATGGGGACGACAATGGTGGAGCTCGGCCTTGCAAACCTGCTCTATTGCTTTAATTGGAAATCACCAGAGGGAATGACGGAGGAAGATATAAATATGGAAGAAACAATTGGGGCACTTTCCATTTCTATATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

115

Amino Acids

13.31

Weight (kDa)

4.61

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 105 1.5e-21 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 258
AclWI GGATC 2 cut(s) 74, 215
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AluBI AGCT 2 cut(s) 135, 235
AluI AGCT 2 cut(s) 135, 235
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 74, 215
AoxI GGCC 1 cut(s) 238
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 267
BaeGI GKGCMC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BclI TGATCA 1 cut(s) 127
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 258
BglII AGATCT 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 19, 203
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
BseDI CCNNGG 2 cut(s) 19, 203
BseSI GKGCMC 1 cut(s) 328
BshFI GGCC 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 1 cut(s) 203
BslFI GGGAC 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 237, 328
Bsp143I GATC 4 cut(s) 79, 97, 127, 207
BspANI GGCC 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 258
BspPI GGATC 2 cut(s) 74, 215
BssECI CCNNGG 2 cut(s) 19, 203
BssMI GATC 4 cut(s) 79, 97, 127, 207
BssT1I CCWWGG 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 99
BstKTI GATC 4 cut(s) 82, 100, 130, 210
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 4 cut(s) 79, 97, 127, 207
BstSCI CCNGG 1 cut(s) 202
BstSLI GKGCMC 1 cut(s) 328
BstX2I RGATCY 3 cut(s) 79, 97, 207
BstXI CCANNNNNNTGG 1 cut(s) 90
BstYI RGATCY 3 cut(s) 79, 97, 207
BsuRI GGCC 1 cut(s) 240
BveI ACCTGC 1 cut(s) 258
CviJI RGCY 3 cut(s) 135, 235, 240
CviKI_1 RGCY 3 cut(s) 135, 235, 240
DpnI GATC 4 cut(s) 81, 99, 129, 209
DpnII GATC 4 cut(s) 79, 97, 127, 207
DraI TTTAAA 2 cut(s) 13, 148
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 19
FaiI YATR 8 cut(s) 27, 132, 213, 215, 302, 308, 341, 343
FaqI GGGAC 1 cut(s) 232
FbaI TGATCA 1 cut(s) 127
FriOI GRGCYC 1 cut(s) 237
FspBI CTAG 1 cut(s) 101
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 203
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 267
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 3 cut(s) 75, 101, 116
HpyCH4V TGCA 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 4 cut(s) 79, 97, 127, 207
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 5 cut(s) 129, 171, 216, 263, 291
MaeI CTAG 1 cut(s) 101
MalI GATC 4 cut(s) 81, 99, 129, 209
MboI GATC 4 cut(s) 79, 97, 127, 207
MboII GAAGA 3 cut(s) 116, 308, 323
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 3 cut(s) 79, 97, 207
MhlI GDGCHC 2 cut(s) 237, 328
MluCI AATT 3 cut(s) 158, 265, 318
MmeI TCCRAC 2 cut(s) 71, 170
MnlI CCTC 2 cut(s) 274, 286
MseI TTAA 4 cut(s) 12, 57, 147, 264
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 204
MunI CAATTG 1 cut(s) 318
NciI CCSGG 1 cut(s) 204
NdeII GATC 4 cut(s) 79, 97, 127, 207
NlaIV GGNNCC 1 cut(s) 36
NmeAIII GCCGAG 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 36
PsuI RGATCY 3 cut(s) 79, 97, 207
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 4 cut(s) 12, 57, 147, 264
Sau3AI GATC 4 cut(s) 79, 97, 127, 207
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 2 cut(s) 237, 328
SetI ASST 4 cut(s) 125, 137, 237, 252
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 3 cut(s) 158, 265, 318
SspMI CTAG 1 cut(s) 101
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 1 cut(s) 19
TasI AATT 3 cut(s) 158, 265, 318
Tru1I TTAA 4 cut(s) 12, 57, 147, 264
Tru9I TTAA 4 cut(s) 12, 57, 147, 264
TspGWI ACGGA 1 cut(s) 305
XbaI TCTAGA 1 cut(s) 100
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.