RLG00000006821

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000354
Physical Location & Seq
Forward (+)
10793705 .. 10794150
446 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006821

Sequence Viewer

Length: 414 bp
ATGATTGATTCAATCTCTAACGACTCTGCTTCTTCTTCTTCTTATGTTCATCTCACCGACAAGTTGTTTGCTCTCAGGGGAAGCATAATATTCTGGATTGTTTTCGGGACCAGTTTTGAGAAGAGTGATTTCGACCACGACAGATTTCATCGAGTGTTGCAAGATACTGCAATCATGATTGCAGACTTCTCTGCAGCTAATTATTTTCCTTCTCGTATCGGGTCGATTATAGATTGGATTTCTGGTAGACATAAAGAGCTTGATAAGGTGATTGATGATCATCTCAAGCATGGGAGGACACAACAAGAGCATGAAGACATAGTTGATGTGCTGCTTAAATGTGTAAAGGAGCCTGGTTCTGGAACTGCTCAGCTTGGTCATAATAACATCAAGGCTGTCATCATGGCAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

138

Amino Acids

15.37

Weight (kDa)

5.84

Isoelectric Point (pI)

27.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 1 cut(s) 12
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 4 cut(s) 197, 259, 373, 411
AluI AGCT 4 cut(s) 197, 259, 373, 411
ApeKI GCWGC 2 cut(s) 194, 331
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 46, 280
AvaII GGWCC 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 206, 318
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 277
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 2 cut(s) 195, 332
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 2 cut(s) 196, 333
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 2 cut(s) 109, 351
BmrFI CCNGG 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 321
Bpu1102I GCTNAGC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 269
BsaBI GATNNNNATC 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse1I ACTGG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 1 cut(s) 354
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMII CTCAG 2 cut(s) 88, 383
BseNI ACTGG 1 cut(s) 111
BseXI GCAGC 2 cut(s) 206, 318
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 277
Bsp1720I GCTNAGC 1 cut(s) 369
BspCNI CTCAG 2 cut(s) 87, 382
BspHI TCATGA 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 109, 351
BspMAI CTGCAG 1 cut(s) 196
BsrI ACTGG 1 cut(s) 111
BssMI GATC 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 354
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 2 cut(s) 74, 369
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 206, 318
BstV2I GAAGAC 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 409
CciI TCATGA 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 108
CviAII CATG 4 cut(s) 175, 290, 311, 403
CviJI RGCY 6 cut(s) 197, 259, 352, 373, 395, 411
CviKI_1 RGCY 6 cut(s) 197, 259, 352, 373, 395, 411
DdeI CTNAG 2 cut(s) 74, 369
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 352
FaeI CATG 4 cut(s) 178, 293, 314, 406
FaqI GGGAC 1 cut(s) 121
FatI CATG 4 cut(s) 174, 289, 310, 402
FbaI TGATCA 1 cut(s) 277
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 195, 332
Fsp4HI GCNGC 2 cut(s) 195, 332
GluI GCNGC 2 cut(s) 195, 332
Hin1II CATG 4 cut(s) 178, 293, 314, 406
HinfI GANTC 2 cut(s) 8, 23
HphI GGTGA 2 cut(s) 46, 280
Hpy166II GTNNAC 1 cut(s) 248
Hpy188III TCNNGA 4 cut(s) 94, 106, 175, 360
Hpy8I GTNNAC 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 219
HpyCH4V TGCA 4 cut(s) 160, 170, 182, 194
HpyF3I CTNAG 2 cut(s) 74, 369
Hsp92II CATG 4 cut(s) 178, 293, 314, 406
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 7 cut(s) 61, 79, 124, 228, 339, 345, 366
Lsp1109I GCAGC 2 cut(s) 206, 318
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 5 cut(s) 24, 27, 30, 133, 326
MluCI AATT 1 cut(s) 199
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 1 cut(s) 288
MseI TTAA 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
NdeII GATC 1 cut(s) 277
NlaIII CATG 4 cut(s) 178, 293, 314, 406
NlaIV GGNNCC 2 cut(s) 109, 351
PagI TCATGA 1 cut(s) 174
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 196, 333
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 109, 351
PspPI GGNCC 1 cut(s) 108
PstI CTGCAG 1 cut(s) 196
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 195, 332
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 354
SetI ASST 5 cut(s) 199, 261, 270, 375, 413
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 1 cut(s) 199
SspI AATATT 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 352
TaqI TCGA 3 cut(s) 132, 151, 224
TasI AATT 1 cut(s) 199
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseI GCWGC 2 cut(s) 194, 331
TspDTI ATGAA 3 cut(s) 38, 137, 327
VpaK11BI GGWCC 1 cut(s) 108
XmiI GTMKAC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.