MD13G1103800.v1.1

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000354
Physical Location & Seq
Forward (+)
7405032 .. 7407460
2429 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1103800.v1.1.491

Sequence Viewer

Length: 1221 bp
ATGGCCTTTTCTCCCTATGGCGGCGATTACTGGAGAGAGATAAGAAAAATATGCGTGCTCGAGCTTTTCAGCGTGAAGAGGGTCCATTCATACAGGCAGTGGCGGATCCAGGAAATAATGTTTGGGGGGTCAATCAGGGAAGAAGAAGTAGATGAAATGGTCAATTCAATCTCTGCCTCTTCATCTTCTGGTGCTCCTGTTAATCTTACCGAAAAGTTGGTTGCTCTCACGGCTAGTATTATTTTTAGGATTGCTTACGGGACAACTTTCCAAGGGAGTAAATTTGAGCATAAAAATATTGATGAGTTCATTCAGGATACTGAGGTCATGCTCGGAGGGATGCCCGGGGCTGACTACTTTCTGTCTTGGATGGGGTGGGTTATCGATATGGCTTCCGGTTTGCACAAGGAGTTCGATAGGATTTCCAAGGAGTTGGATGGTTTTTTCCAGCAGGTGATTGATGATCATCTGAAACCTGGGAGGAGAGTTGACGACGAACAAGCTCATGAAGATATAGTTGACGTTCTGCTAAAGATAGTGAAGGAGCAAAGTGAGTTTGGAGCCTCTCATCTTGGTCACAACAACATCAAGGCAGTTCTCTTGAATCTATTTTTAGGTGGAATAGACACAGGTACAATAACAATGGTGTGGGCGATGGCAGAGCTAGCTAAGAACCCTAAATTGATGAAGAAAGCACAAGAAGAAGTCAGAAAATGCATCGGAAACAAAGGAAAAATCACAGAAACTGATACAGATCAGCTTCAATACCTCAAGATGGTAATCAAAGAAACCCTAAGACTGCATCCTCCAGCTCCAATGCTCCTTCCAAGAGAAACCATCTCCCATTGCAAAATCCAAGGTTATAATATTGAACCAAAAACAACAATTTATATCAATGACTGGGCAATCGCACGCGACCCTGAGGTTTGGAGGGACCCCGAAAAATTTATTCCAGAACGGTTTGAGGGAAGCTCTGTCGATTTCAAAGGACAACATTTTGAGTTTTTGCCGTTTGGAGCTGGTCGAAGAGTTTGCCCTGGAATCTATATGGGAACGACAACAGTGGAGCTTGGACTAGCAAATCTTCTCTACTGGTTCGATTGGAAATTGCCTGATGGAATGAAGGAGGAAGATCTTGACATGGAAGAAGCCAGTGGCTCCCTTTCCCTCACCGTTGCTAAGAGAACTCCTCTCAACCTTGTACCCATGAAATTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

407

Amino Acids

46.2

Weight (kDa)

5.43

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 9 - 383 5.2e-78 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 864
AarI CACCTGC 1 cut(s) 442
Acc36I ACCTGC 1 cut(s) 442
AccII CGCG 1 cut(s) 915
AciI CCGC 2 cut(s) 21, 103
AclWI GGATC 2 cut(s) 100, 113
AcsI RAATTY 3 cut(s) 281, 944, 1211
AfaI GTAC 2 cut(s) 634, 1203
AfiI CCNNNNNNNGG 2 cut(s) 20, 775
AgsI TTSAA 5 cut(s) 168, 604, 764, 872, 985
AjnI CCWGG 3 cut(s) 108, 475, 1036
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 9 cut(s) 64, 503, 664, 668, 760, 812, 972, 1019, 1069
AluI AGCT 9 cut(s) 64, 503, 664, 668, 760, 812, 972, 1019, 1069
Alw21I GWGCWC 2 cut(s) 60, 196
AlwI GGATC 2 cut(s) 100, 113
AlwNI CAGNNNCTG 1 cut(s) 746
Ama87I CYCGRG 2 cut(s) 59, 344
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 3 cut(s) 281, 944, 1211
AspS9I GGNCC 2 cut(s) 82, 934
AsuC2I CCSGG 2 cut(s) 345, 346
AsuHPI GGTGA 2 cut(s) 466, 1162
AsuNHI GCTAGC 1 cut(s) 664
AvaI CYCGRG 2 cut(s) 59, 344
AvaII GGWCC 2 cut(s) 82, 934
AxyI CCTNAGG 1 cut(s) 921
BaeI ACNNNNGTAYC 2 cut(s) 309, 342
BamHI GGATCC 1 cut(s) 105
Bbv12I GWGCWC 2 cut(s) 60, 196
BccI CCATC 6 cut(s) 364, 431, 649, 769, 845, 1109
BceAI ACGGC 2 cut(s) 246, 994
BcgI CGANNNNNNTGC 2 cut(s) 1014, 1048
BciT130I CCWGG 3 cut(s) 110, 477, 1038
BciVI GTATCC 1 cut(s) 310
BclI TGATCA 1 cut(s) 463
BcnI CCSGG 2 cut(s) 345, 346
BfaI CTAG 3 cut(s) 234, 665, 1076
BfuAI ACCTGC 1 cut(s) 442
BfuI GTATCC 1 cut(s) 310
BglII AGATCT 1 cut(s) 1132
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme1390I CCNGG 5 cut(s) 110, 345, 346, 477, 1038
Bme18I GGWCC 2 cut(s) 82, 934
BmeT110I CYCGRG 2 cut(s) 59, 344
BmgT120I GGNCC 2 cut(s) 82, 934
BmiI GGNNCC 6 cut(s) 83, 107, 562, 935, 936, 1159
BmrFI CCNGG 5 cut(s) 110, 345, 346, 477, 1038
BmrI ACTGGG 1 cut(s) 910
BmsI GCATC 3 cut(s) 330, 726, 811
BmtI GCTAGC 1 cut(s) 668
BmuI ACTGGG 1 cut(s) 910
BplI GAGNNNNNCTC 4 cut(s) 956, 988, 1174, 1206
BpmI CTGGAG 2 cut(s) 52, 792
BpuEI CTTGAG 1 cut(s) 755
BpuMI CCSGG 2 cut(s) 345, 346
Bsa29I ATCGAT 1 cut(s) 384
BsaBI GATNNNNATC 3 cut(s) 465, 753, 779
BsaJI CCNNGG 7 cut(s) 271, 344, 345, 426, 476, 856, 1036
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 775
Bse1I ACTGG 4 cut(s) 35, 905, 1097, 1152
Bse21I CCTNAGG 1 cut(s) 921
Bse3DI GCAATG 1 cut(s) 844
Bse8I GATNNNNATC 3 cut(s) 465, 753, 779
BseBI CCWGG 3 cut(s) 110, 477, 1038
BseCI ATCGAT 1 cut(s) 384
BseDI CCNNGG 7 cut(s) 271, 344, 345, 426, 476, 856, 1036
BseGI GGATG 4 cut(s) 345, 375, 442, 802
BseJI GATNNNNATC 3 cut(s) 465, 753, 779
BseLI CCNNNNNNNGG 2 cut(s) 20, 775
BseMI GCAATG 1 cut(s) 844
BseMII CTCAG 2 cut(s) 312, 912
BseNI ACTGG 4 cut(s) 35, 905, 1097, 1152
BseRI GAGGAG 2 cut(s) 496, 1179
Bsh1236I CGCG 1 cut(s) 915
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 384
BsiHKAI GWGCWC 2 cut(s) 60, 196
BsiHKCI CYCGRG 2 cut(s) 59, 344
BsiSI CCGG 2 cut(s) 345, 396
BslFI GGGAC 2 cut(s) 274, 947
BslI CCNNNNNNNGG 2 cut(s) 20, 775
BsmFI GGGAC 2 cut(s) 274, 947
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 2 cut(s) 59, 344
Bsp1286I GDGCHC 2 cut(s) 60, 196
Bsp143I GATC 4 cut(s) 105, 463, 754, 1132
BspACI CCGC 2 cut(s) 21, 103
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 313, 913
BspDI ATCGAT 1 cut(s) 384
BspFNI CGCG 1 cut(s) 915
BspHI TCATGA 1 cut(s) 505
BspLI GGNNCC 6 cut(s) 83, 107, 562, 935, 936, 1159
BspMI ACCTGC 1 cut(s) 442
BspOI GCTAGC 1 cut(s) 668
BspPI GGATC 2 cut(s) 100, 113
BsrDI GCAATG 1 cut(s) 844
BsrI ACTGG 4 cut(s) 35, 905, 1097, 1152
BssECI CCNNGG 7 cut(s) 271, 344, 345, 426, 476, 856, 1036
BssMI GATC 4 cut(s) 105, 463, 754, 1132
BssT1I CCWWGG 3 cut(s) 271, 426, 856
Bst2UI CCWGG 3 cut(s) 110, 477, 1038
Bst4CI ACNGT 3 cut(s) 960, 1063, 1174
Bst6I CTCTTC 3 cut(s) 71, 184, 1021
BstC8I GCNNGC 3 cut(s) 56, 666, 913
BstDEI CTNAG 5 cut(s) 321, 669, 794, 921, 1179
BstF5I GGATG 4 cut(s) 345, 375, 442, 802
BstFNI CGCG 1 cut(s) 915
BstKTI GATC 4 cut(s) 108, 466, 757, 1135
BstMBI GATC 4 cut(s) 105, 463, 754, 1132
BstMWI GCNNNNNNNGC 2 cut(s) 230, 665
BstNI CCWGG 3 cut(s) 110, 477, 1038
BstSCI CCNGG 5 cut(s) 108, 343, 344, 475, 1036
BstUI CGCG 1 cut(s) 915
BstX2I RGATCY 2 cut(s) 105, 1132
BstXI CCANNNNNNTGG 1 cut(s) 433
BstYI RGATCY 2 cut(s) 105, 1132
Bsu15I ATCGAT 1 cut(s) 384
Bsu36I CCTNAGG 1 cut(s) 921
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 384
BtgZI GCGATG 1 cut(s) 668
BtsCI GGATG 4 cut(s) 345, 375, 442, 802
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 3 cut(s) 104, 1068, 1159
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 3 cut(s) 56, 666, 913
CaiI CAGNNNCTG 1 cut(s) 746
CciI TCATGA 1 cut(s) 505
Cfr13I GGNCC 2 cut(s) 82, 934
Cfr9I CCCGGG 1 cut(s) 344
ClaI ATCGAT 1 cut(s) 384
Csp6I GTAC 2 cut(s) 633, 1202
CviAII CATG 4 cut(s) 328, 506, 1141, 1207
CviQI GTAC 2 cut(s) 633, 1202
DdeI CTNAG 5 cut(s) 321, 669, 794, 921, 1179
DpnI GATC 4 cut(s) 107, 465, 756, 1134
DpnII GATC 4 cut(s) 105, 463, 754, 1132
Eam1104I CTCTTC 3 cut(s) 71, 184, 1021
EarI CTCTTC 3 cut(s) 71, 184, 1021
EciI GGCGGA 1 cut(s) 118
Eco130I CCWWGG 3 cut(s) 271, 426, 856
Eco47I GGWCC 2 cut(s) 82, 934
Eco81I CCTNAGG 1 cut(s) 921
Eco88I CYCGRG 2 cut(s) 59, 344
EcoO109I RGGNCCY 1 cut(s) 934
EcoRII CCWGG 3 cut(s) 108, 475, 1036
EcoT14I CCWWGG 3 cut(s) 271, 426, 856
EcoT22I ATGCAT 1 cut(s) 719
ErhI CCWWGG 3 cut(s) 271, 426, 856
FaeI CATG 4 cut(s) 331, 509, 1144, 1210
FaqI GGGAC 2 cut(s) 274, 947
FatI CATG 4 cut(s) 327, 505, 1140, 1206
FbaI TGATCA 1 cut(s) 463
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 4 cut(s) 352, 382, 449, 789
Fsp4HI GCNGC 1 cut(s) 22
FspBI CTAG 3 cut(s) 234, 665, 1076
GluI GCNGC 1 cut(s) 22
GsuI CTGGAG 2 cut(s) 52, 792
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 345, 396
Hin1II CATG 4 cut(s) 331, 509, 1144, 1210
HincII GTYRAC 2 cut(s) 490, 520
HindII GTYRAC 2 cut(s) 490, 520
HinfI GANTC 2 cut(s) 604, 1041
HpaII CCGG 2 cut(s) 345, 396
HphI GGTGA 2 cut(s) 466, 1162
Hpy166II GTNNAC 2 cut(s) 490, 520
Hpy188I TCNGA 4 cut(s) 335, 471, 710, 722
Hpy188III TCNNGA 6 cut(s) 314, 506, 601, 772, 953, 1136
Hpy8I GTNNAC 2 cut(s) 490, 520
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 3 cut(s) 535, 833, 1117
HpyCH4III ACNGT 3 cut(s) 960, 1063, 1174
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 4 cut(s) 403, 717, 802, 849
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 665
HpyF3I CTNAG 5 cut(s) 321, 669, 794, 921, 1179
HpySE526I ACGT 1 cut(s) 522
Hsp92II CATG 4 cut(s) 331, 509, 1144, 1210
KflI GGGWCCC 1 cut(s) 934
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 4 cut(s) 105, 463, 754, 1132
LmnI GCTCC 8 cut(s) 199, 544, 560, 817, 825, 1016, 1066, 1163
LweI GCATC 3 cut(s) 330, 726, 811
MaeI CTAG 3 cut(s) 234, 665, 1076
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 1 cut(s) 575
MalI GATC 4 cut(s) 107, 465, 756, 1134
MboI GATC 4 cut(s) 105, 463, 754, 1132
MflI RGATCY 2 cut(s) 105, 1132
MhlI GDGCHC 2 cut(s) 60, 196
MluCI AATT 7 cut(s) 163, 281, 680, 885, 944, 1106, 1211
MmeI TCCRAC 1 cut(s) 414
Mph1103I ATGCAT 1 cut(s) 719
MseI TTAA 2 cut(s) 201, 1219
MspI CCGG 2 cut(s) 345, 396
MspR9I CCNGG 5 cut(s) 110, 345, 346, 477, 1038
MvaI CCWGG 3 cut(s) 110, 477, 1038
MvnI CGCG 1 cut(s) 915
MwoI GCNNNNNNNGC 2 cut(s) 230, 665
NciI CCSGG 2 cut(s) 345, 346
NdeII GATC 4 cut(s) 105, 463, 754, 1132
NheI GCTAGC 1 cut(s) 664
NlaIII CATG 4 cut(s) 331, 509, 1144, 1210
NlaIV GGNNCC 6 cut(s) 83, 107, 562, 935, 936, 1159
NmuCI GTSAC 1 cut(s) 575
NsiI ATGCAT 1 cut(s) 719
PaeR7I CTCGAG 1 cut(s) 59
PagI TCATGA 1 cut(s) 505
PaqCI CACCTGC 1 cut(s) 442
PfeI GAWTC 2 cut(s) 604, 1041
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 1 cut(s) 23
PpuMI RGGWCCY 1 cut(s) 934
PsiI TTATAA 1 cut(s) 864
Psp5II RGGWCCY 1 cut(s) 934
Psp6I CCWGG 3 cut(s) 108, 475, 1036
PspGI CCWGG 3 cut(s) 108, 475, 1036
PspN4I GGNNCC 6 cut(s) 83, 107, 562, 935, 936, 1159
PspPI GGNCC 2 cut(s) 82, 934
PspPPI RGGWCCY 1 cut(s) 934
PspXI VCTCGAGB 1 cut(s) 59
PstNI CAGNNNCTG 1 cut(s) 746
PsuI RGATCY 2 cut(s) 105, 1132
RsaI GTAC 2 cut(s) 634, 1203
RsaNI GTAC 2 cut(s) 633, 1202
SaqAI TTAA 2 cut(s) 201, 1219
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 4 cut(s) 105, 463, 754, 1132
Sau96I GGNCC 2 cut(s) 82, 934
ScrFI CCNGG 5 cut(s) 110, 345, 346, 477, 1038
SduI GDGCHC 2 cut(s) 60, 196
SfaNI GCATC 3 cut(s) 330, 726, 811
Sfr274I CTCGAG 1 cut(s) 59
SinI GGWCC 2 cut(s) 82, 934
SlaI CTCGAG 1 cut(s) 59
SmaI CCCGGG 1 cut(s) 346
SmlI CTYRAG 2 cut(s) 59, 770
SmoI CTYRAG 2 cut(s) 59, 770
Sse9I AATT 7 cut(s) 163, 281, 680, 885, 944, 1106, 1211
SsiI CCGC 2 cut(s) 21, 103
SspI AATATT 2 cut(s) 298, 868
SspMI CTAG 3 cut(s) 234, 665, 1076
StyD4I CCNGG 5 cut(s) 108, 343, 344, 475, 1036
StyI CCWWGG 3 cut(s) 271, 426, 856
TaaI ACNGT 3 cut(s) 960, 1063, 1174
TaiI ACGT 1 cut(s) 525
TaqI TCGA 6 cut(s) 60, 384, 414, 978, 1024, 1098
TasI AATT 7 cut(s) 163, 281, 680, 885, 944, 1106, 1211
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 2 cut(s) 604, 1041
Tru1I TTAA 2 cut(s) 201, 1219
Tru9I TTAA 2 cut(s) 201, 1219
TscAI CASTG 3 cut(s) 104, 1068, 1159
TseFI GTSAC 1 cut(s) 575
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 7 cut(s) 78, 168, 171, 298, 522, 701, 1136
TspMI CCCGGG 1 cut(s) 344
TspRI CASTG 3 cut(s) 104, 1068, 1159
VpaK11BI GGWCC 2 cut(s) 82, 934
XapI RAATTY 3 cut(s) 281, 944, 1211
XhoI CTCGAG 1 cut(s) 59
XmaI CCCGGG 1 cut(s) 344
XspI CTAG 3 cut(s) 234, 665, 1076
Zsp2I ATGCAT 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.