RLG00000003494

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000354
Physical Location & Seq
Reverse (-)
49197864 .. 49202308
4445 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003494

Sequence Viewer

Length: 492 bp
ATGCGAATAGAAGAGATGTTCATAGTGTCCGTGTATTTGTTCGTTCATGTTACCTACTTCATAGGTAAATTGGTGGAGCAGCCGATCGATGGTTATAAGTCCGGTCAGAAGTACTCGATCTCAGCAGCGTCGGTGTTAGCTCGGTCTGATCTTCGAACCGGTCTGATTACAGTTGCTCAATCTGAGATACTCAATCTCGGTAGCGTCGGCGTAAGCTTCGGATTTGAATCTCTGCCTGTTCCAAAGCTATCTGTGAGGGAAAACTTCTTGGGTTCGGCTAGCACATCTCCGTCGAGGTGGGTGTTAAGTAGGTATCAGACGAATCCTAATTGGGTTTGTGTGCTAGTTCACGTGATCGGGTTTGTTCTTAATTCTATGCCCCGTTGTGGGGCTTGGATTGAGATTGTTGATCCCCGCTTGCAGAGGAGAGGCAACAACACTTCTCGCAGGTTTCTGGTGTTTGATAGGGTGCTGGAAAGGCCTGTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.38

Weight (kDa)

9.56

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
Acc36I ACCTGC 1 cut(s) 438
AciI CCGC 1 cut(s) 415
AclWI GGATC 1 cut(s) 404
AcvI CACGTG 1 cut(s) 352
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 4 cut(s) 89, 386, 387, 388
AgeI ACCGGT 1 cut(s) 158
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 3 cut(s) 140, 216, 247
AluI AGCT 3 cut(s) 140, 216, 247
AlwI GGATC 1 cut(s) 404
AoxI GGCC 1 cut(s) 479
ApeKI GCWGC 2 cut(s) 79, 125
AsiGI ACCGGT 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 154
AsuNHI GCTAGC 1 cut(s) 278
BbrPI CACGTG 1 cut(s) 352
BbvI GCAGC 2 cut(s) 91, 137
BccI CCATC 1 cut(s) 83
BfaI CTAG 2 cut(s) 279, 344
BfuAI ACCTGC 1 cut(s) 438
BisI GCNGC 2 cut(s) 80, 126
BlsI GCNGC 2 cut(s) 81, 127
BmcAI AGTACT 1 cut(s) 113
BmtI GCTAGC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 154
Bsa29I ATCGAT 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 352
BsaBI GATNNNNATC 1 cut(s) 226
BsaWI WCCGGW 2 cut(s) 101, 158
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 386, 387, 388
Bse118I RCCGGY 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 226
BseCI ATCGAT 1 cut(s) 87
BseJI GATNNNNATC 1 cut(s) 226
BseLI CCNNNNNNNGG 4 cut(s) 89, 386, 387, 388
BseMII CTCAG 2 cut(s) 135, 174
BseRI GAGGAG 1 cut(s) 439
BseXI GCAGC 2 cut(s) 91, 137
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 481
BshTI ACCGGT 1 cut(s) 158
BshVI ATCGAT 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 87
BsiSI CCGG 2 cut(s) 102, 159
BslI CCNNNNNNNGG 4 cut(s) 89, 386, 387, 388
BsnI GGCC 1 cut(s) 481
Bsp119I TTCGAA 1 cut(s) 154
Bsp143I GATC 5 cut(s) 84, 117, 148, 354, 409
BspACI CCGC 1 cut(s) 415
BspANI GGCC 1 cut(s) 481
BspCNI CTCAG 2 cut(s) 134, 175
BspDI ATCGAT 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 438
BspOI GCTAGC 1 cut(s) 282
BspPI GGATC 1 cut(s) 404
BspT104I TTCGAA 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 158
BssMI GATC 5 cut(s) 84, 117, 148, 354, 409
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 6
BstBAI YACGTR 1 cut(s) 352
BstBI TTCGAA 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 280, 419
BstDEI CTNAG 2 cut(s) 121, 183
BstKTI GATC 5 cut(s) 87, 120, 151, 357, 412
BstMBI GATC 5 cut(s) 84, 117, 148, 354, 409
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 478
BstV1I GCAGC 2 cut(s) 91, 137
Bsu15I ATCGAT 1 cut(s) 87
BsuRI GGCC 1 cut(s) 481
BsuTUI ATCGAT 1 cut(s) 87
BveI ACCTGC 1 cut(s) 438
Cac8I GCNNGC 2 cut(s) 280, 419
Cfr10I RCCGGY 1 cut(s) 158
ClaI ATCGAT 1 cut(s) 87
CseI GACGC 2 cut(s) 117, 193
Csp6I GTAC 1 cut(s) 112
CspAI ACCGGT 1 cut(s) 158
CviAII CATG 1 cut(s) 47
CviJI RGCY 7 cut(s) 82, 140, 216, 247, 278, 392, 481
CviKI_1 RGCY 7 cut(s) 82, 140, 216, 247, 278, 392, 481
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 121, 183
DpnI GATC 5 cut(s) 86, 119, 150, 356, 411
DpnII GATC 5 cut(s) 84, 117, 148, 354, 409
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco147I AGGCCT 1 cut(s) 481
Eco72I CACGTG 1 cut(s) 352
FaeI CATG 1 cut(s) 50
FaiI YATR 5 cut(s) 23, 48, 62, 96, 377
FatI CATG 1 cut(s) 46
FauI CCCGC 1 cut(s) 422
Fnu4HI GCNGC 2 cut(s) 80, 126
Fsp4HI GCNGC 2 cut(s) 80, 126
FspBI CTAG 2 cut(s) 279, 344
GluI GCNGC 2 cut(s) 80, 126
HaeIII GGCC 1 cut(s) 481
HapII CCGG 2 cut(s) 102, 159
HgaI GACGC 2 cut(s) 117, 193
Hin1II CATG 1 cut(s) 50
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 2 cut(s) 227, 322
HpaII CCGG 2 cut(s) 102, 159
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 6 cut(s) 108, 148, 165, 184, 221, 318
Hpy8I GTNNAC 1 cut(s) 349
Hpy99I CGWCG 3 cut(s) 133, 209, 295
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 1 cut(s) 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 478
HpyF3I CTNAG 2 cut(s) 121, 183
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 1 cut(s) 50
Kzo9I GATC 5 cut(s) 84, 117, 148, 354, 409
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 6 cut(s) 115, 172, 249, 433, 440, 458
Lsp1109I GCAGC 2 cut(s) 91, 137
MaeI CTAG 2 cut(s) 279, 344
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 49
MalI GATC 5 cut(s) 86, 119, 150, 356, 411
MboI GATC 5 cut(s) 84, 117, 148, 354, 409
MboII GAAGA 2 cut(s) 23, 143
MluCI AATT 3 cut(s) 68, 328, 370
MnlI CCTC 4 cut(s) 249, 288, 417, 422
MseI TTAA 2 cut(s) 305, 369
MspI CCGG 2 cut(s) 102, 159
MwoI GCNNNNNNNGC 1 cut(s) 478
NdeII GATC 5 cut(s) 84, 117, 148, 354, 409
NheI GCTAGC 1 cut(s) 278
NlaIII CATG 1 cut(s) 50
NspV TTCGAA 1 cut(s) 154
PceI AGGCCT 1 cut(s) 481
PfeI GAWTC 2 cut(s) 227, 322
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 2 cut(s) 81, 127
Ple19I CGATCG 1 cut(s) 87
PmaCI CACGTG 1 cut(s) 352
PmlI CACGTG 1 cut(s) 352
Ppu21I YACGTR 1 cut(s) 352
PsiI TTATAA 1 cut(s) 96
PspCI CACGTG 1 cut(s) 352
PvuI CGATCG 1 cut(s) 87
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SaqAI TTAA 2 cut(s) 305, 369
SatI GCNGC 2 cut(s) 80, 126
Sau3AI GATC 5 cut(s) 84, 117, 148, 354, 409
ScaI AGTACT 1 cut(s) 113
SetI ASST 9 cut(s) 56, 67, 142, 218, 249, 299, 314, 354, 452
SfuI TTCGAA 1 cut(s) 154
Sse9I AATT 3 cut(s) 68, 328, 370
SseBI AGGCCT 1 cut(s) 481
SsiI CCGC 1 cut(s) 415
SspMI CTAG 2 cut(s) 279, 344
StuI AGGCCT 1 cut(s) 481
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 1 cut(s) 354
TaqI TCGA 5 cut(s) 87, 116, 154, 293, 486
TaqII GACCGA 1 cut(s) 132
TasI AATT 3 cut(s) 68, 328, 370
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 2 cut(s) 227, 322
Tru1I TTAA 2 cut(s) 305, 369
Tru9I TTAA 2 cut(s) 305, 369
TseI GCWGC 2 cut(s) 79, 125
TspDTI ATGAA 3 cut(s) 10, 35, 49
TspGWI ACGGA 2 cut(s) 19, 279
XspI CTAG 2 cut(s) 279, 344
ZrmI AGTACT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.