AT3G23470

BEST Arabidopsis thaliana protein match is Cyclopropane-fatty-acyl-phospholipid synthase (TAIR

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
8414616 .. 8418784
4169 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23470.2

Sequence Viewer

Length: 1386 bp
ATGGTAATAGCACAAAGTTTGCTATGGAAAGAAATCACTCTACTGAAAAAAATACAACATATGGTCCTTTCCTTAACCGAATCAGGGGCTAGGCTTTTCGTTACTAGATTCTTGGAACAATTCATATCCATCGGTTGTGTAACGATACTAGAAGAAGGAGGAACGATGTTCATATTCGGGGAAAAAGATTCTACTTGCCCTTTGAAATCTATCCTCAAGATTCACAGTCCTCAGTTTTACTGGAAGGTTATGACACAAGCAGATTTAGGACTCGCAGATGCTTATATCAGTGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATTTGATTATGATTCTCATCGCTAACAGAGACCAGCGCTCACCAAAATCAAACCTTGTTAAGAAAAGGGGATGGTGGACCCCGGTGTTTCTAACTGCCGGTTTAGCATCCGTAAAATATTATCTAAAGCATGTCTTAAAACAGAACACTCTAACTCAAGCTCGAAAGAACATTTCTAGTCACTATGACCTTAGCAACGAGTTTTTCGGTCTCTTCATGGATGATACCATGATGTACTCCTCTGCAATATTCAAGTCAGAAAATGAGGATCCTAGAACTGCACAGATGAGAAAAATATCTCTTTTAATTGAAAAGGCGAGGATAGAGAAGAACCATGAGGTCTTAGAGATGGGATGCGGATGGGGAACTTTTGCCATAGAAGTTGTGAAAAGAACTGGATGCAAATACACTGGCATTACTCTTTCTATTGAACAGCTTAAATATGCAAAAGCAAAAGTGAAAGAAGCTGGACTTCAGGGTCGGATTACGTTTATGCTCTGCGATTATCGCCAACTATCTGATGCTCGCAAATATGACAGAATTATAGCTTGTGAGATGATAGAAGCGGTTGGCCACGAGTTTATGGATAAGTTTTTCAGTTGTTGTGAAGATGCGCTTGCAGAAAACGGCATTTTTGTCCTACAGTTCACAGCGATACCCGAGGCTCTTTACGACGAGAGCAGACTAACTTCAGGTTTCATAACGGAATACATATTCCCTGGTGGATGTCTTCCTTCTTTAGCCAGAGTTACTTCAGCCATGGCCTCTTCCTCTAGGCTATGCATTGAAAACGTTGAGAACATTGGGATCCATTACTACCACACGTTGAGATGTTGGAGGAAGAACTTTTTGGAGAGACAAAAACAAATCATCGATCTTGGATTCGACGATAAATTCATAAGGACATGGGAATATTATTTCGACTATTGTGCAGCTGGTTTCAAGACTCTTACCCTTAGAAGCTACCAGATAGTTTTCTCACGCCCAGGGAACGTCGCTGCGTTCGGTGATGATGATCCATTCCGCAGTTCCACTAGAAAAAACAACATTATATAG

Protein Analysis

461

Amino Acids

52.76

Weight (kDa)

8.46

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 188 - 460 9.2e-75 Mycolic acid cyclopropane synthetase
Methyltransf_23 PF13489 237 - 352 1.6e-08 Methyltransferase domain
MTS PF05175 238 - 350 5.4e-06 Methyltransferase small domain
TRM5-TYW2_MTfase PF02475 244 - 341 2.1e-06 TRM5/TYW2 methyltransferase domain
Methyltransf_31 PF13847 246 - 365 2.6e-10 Methyltransferase domain
Methyltransf_25 PF13649 251 - 347 2.3e-14 Methyltransferase domain
Methyltransf_11 PF08241 252 - 351 8.2e-10 Methyltransferase domain
Methyltransf_12 PF08242 252 - 349 9.3e-09 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000555)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 807
AciI CCGC 3 cut(s) 687, 896, 1354
AclI AACGTT 1 cut(s) 1122
AclWI GGATC 5 cut(s) 593, 606, 1132, 1145, 1340
AcoI YGGCCR 1 cut(s) 901
AcsI RAATTY 2 cut(s) 331, 1223
AcuI CTGAAG 3 cut(s) 788, 1005, 1068
AfaI GTAC 1 cut(s) 566
AfeI AGCGCT 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 84
AflIII ACRYGT 1 cut(s) 1152
AgsI TTSAA 7 cut(s) 205, 331, 583, 641, 761, 1118, 1273
AjnI CCWGG 2 cut(s) 1048, 1315
AjuI GAANNNNNNNTTGG 2 cut(s) 1163, 1195
AluBI AGCT 6 cut(s) 491, 766, 797, 878, 1265, 1293
AluI AGCT 6 cut(s) 491, 766, 797, 878, 1265, 1293
Alw26I GTCTC 3 cut(s) 354, 545, 1180
AlwI GGATC 5 cut(s) 593, 606, 1132, 1145, 1340
Ama87I CYCGRG 1 cut(s) 989
Aor51HI AGCGCT 1 cut(s) 368
AoxI GGCC 2 cut(s) 901, 1092
ApeKI GCWGC 2 cut(s) 1262, 1328
ApoI RAATTY 2 cut(s) 331, 1223
AspLEI GCGC 2 cut(s) 369, 946
AspS9I GGNCC 2 cut(s) 64, 408
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 363, 1349
AvaI CYCGRG 1 cut(s) 989
AvaII GGWCC 2 cut(s) 64, 408
BalI TGGCCA 1 cut(s) 903
BamHI GGATCC 2 cut(s) 598, 1137
BauI CACGAG 1 cut(s) 905
BbsI GAAGAC 1 cut(s) 1052
BbvI GCAGC 2 cut(s) 1274, 1315
BccI CCATC 4 cut(s) 137, 396, 673, 684
BceAI ACGGC 1 cut(s) 973
BcgI CGANNNNNNTGC 2 cut(s) 1241, 1275
BciT130I CCWGG 2 cut(s) 1050, 1317
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 3 cut(s) 354, 545, 1180
BfaI CTAG 7 cut(s) 90, 105, 149, 507, 603, 1104, 1365
BfmI CTRYAG 1 cut(s) 971
BfoI RGCGCY 1 cut(s) 370
BisI GCNGC 2 cut(s) 1263, 1329
BlsI GCNGC 2 cut(s) 1264, 1330
Bme1390I CCNGG 3 cut(s) 413, 1050, 1317
Bme18I GGWCC 2 cut(s) 64, 408
BmeT110I CYCGRG 1 cut(s) 989
BmgT120I GGNCC 2 cut(s) 64, 408
BmiI GGNNCC 3 cut(s) 410, 600, 1139
BmrFI CCNGG 3 cut(s) 413, 1050, 1317
BmsI GCATC 6 cut(s) 268, 446, 674, 719, 841, 931
BpiI GAAGAC 1 cut(s) 1052
Bpu10I CCTNAGC 1 cut(s) 521
BpuEI CTTGAG 2 cut(s) 200, 471
BpuMI CCSGG 1 cut(s) 413
Bsa29I ATCGAT 1 cut(s) 1203
BsaBI GATNNNNATC 2 cut(s) 347, 1344
BsaI GGTCTC 2 cut(s) 354, 545
BsaJI CCNNGG 6 cut(s) 411, 990, 1048, 1089, 1315, 1316
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 3 cut(s) 245, 730, 745
Bse8I GATNNNNATC 2 cut(s) 347, 1344
BseBI CCWGG 2 cut(s) 1050, 1317
BseCI ATCGAT 1 cut(s) 1203
BseDI CCNNGG 6 cut(s) 411, 990, 1048, 1089, 1315, 1316
BseGI GGATG 7 cut(s) 407, 437, 556, 689, 695, 734, 1061
BseJI GATNNNNATC 2 cut(s) 347, 1344
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 245, 333
BseNI ACTGG 3 cut(s) 245, 730, 745
BseRI GAGGAG 1 cut(s) 559
BseXI GCAGC 2 cut(s) 1274, 1315
BsgI GTGCAG 2 cut(s) 594, 1281
BshFI GGCC 2 cut(s) 903, 1094
BshVI ATCGAT 1 cut(s) 1203
BsiHKCI CYCGRG 1 cut(s) 989
BsiSI CCGG 2 cut(s) 413, 429
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 3 cut(s) 354, 545, 1180
BsnI GGCC 2 cut(s) 903, 1094
Bso31I GGTCTC 2 cut(s) 354, 545
BsoBI CYCGRG 1 cut(s) 989
Bsp143I GATC 4 cut(s) 598, 1137, 1204, 1345
Bsp19I CCATGG 1 cut(s) 1089
BspACI CCGC 3 cut(s) 687, 896, 1354
BspANI GGCC 2 cut(s) 903, 1094
BspCNI CTCAG 2 cut(s) 244, 332
BspDI ATCGAT 1 cut(s) 1203
BspLI GGNNCC 3 cut(s) 410, 600, 1139
BspPI GGATC 5 cut(s) 593, 606, 1132, 1145, 1340
BspTNI GGTCTC 2 cut(s) 354, 545
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 3 cut(s) 245, 730, 745
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 6 cut(s) 411, 990, 1048, 1089, 1315, 1316
BssMI GATC 4 cut(s) 598, 1137, 1204, 1345
BssSI CACGAG 1 cut(s) 905
BssT1I CCWWGG 1 cut(s) 1089
Bst2BI CACGAG 1 cut(s) 905
Bst2UI CCWGG 2 cut(s) 1050, 1317
Bst4CI ACNGT 2 cut(s) 227, 975
Bst6I CTCTTC 2 cut(s) 548, 1102
BstC8I GCNNGC 2 cut(s) 856, 948
BstDEI CTNAG 5 cut(s) 231, 319, 521, 673, 1286
BstDSI CCRYGG 1 cut(s) 1089
BstF5I GGATG 7 cut(s) 407, 437, 556, 689, 695, 734, 1061
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 2 cut(s) 369, 946
BstKTI GATC 4 cut(s) 601, 1140, 1207, 1348
BstMAI GTCTC 3 cut(s) 354, 545, 1180
BstMBI GATC 4 cut(s) 598, 1137, 1204, 1345
BstMWI GCNNNNNNNGC 2 cut(s) 434, 837
BstNI CCWGG 2 cut(s) 1050, 1317
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 3 cut(s) 411, 1048, 1315
BstSFI CTRYAG 1 cut(s) 971
BstV1I GCAGC 2 cut(s) 1274, 1315
BstV2I GAAGAC 1 cut(s) 1052
BstX2I RGATCY 2 cut(s) 598, 1137
BstYI RGATCY 2 cut(s) 598, 1137
Bsu15I ATCGAT 1 cut(s) 1203
BsuRI GGCC 2 cut(s) 903, 1094
BsuTUI ATCGAT 1 cut(s) 1203
BtgI CCRYGG 1 cut(s) 1089
BtgZI GCGATG 1 cut(s) 334
BtsCI GGATG 7 cut(s) 407, 437, 556, 689, 695, 734, 1061
BtsIMutI CAGTG 2 cut(s) 295, 738
Cac8I GCNNGC 2 cut(s) 856, 948
CfoI GCGC 2 cut(s) 369, 946
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 2 cut(s) 64, 408
ClaI ATCGAT 1 cut(s) 1203
Csp6I GTAC 1 cut(s) 565
CviAII CATG 6 cut(s) 461, 547, 559, 665, 1090, 1236
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 5 cut(s) 231, 319, 521, 673, 1286
DpnI GATC 4 cut(s) 600, 1139, 1206, 1347
DpnII GATC 4 cut(s) 598, 1137, 1204, 1345
DrdI GACNNNNNNGTC 1 cut(s) 807
DseDI GACNNNNNNGTC 1 cut(s) 807
EaeI YGGCCR 1 cut(s) 901
Eam1104I CTCTTC 2 cut(s) 548, 1102
EarI CTCTTC 2 cut(s) 548, 1102
Eco130I CCWWGG 1 cut(s) 1089
Eco31I GGTCTC 2 cut(s) 354, 545
Eco47I GGWCC 2 cut(s) 64, 408
Eco47III AGCGCT 1 cut(s) 368
Eco57I CTGAAG 3 cut(s) 788, 1005, 1068
Eco88I CYCGRG 1 cut(s) 989
EcoRII CCWGG 2 cut(s) 1048, 1315
EcoT14I CCWWGG 1 cut(s) 1089
EcoT22I ATGCAT 1 cut(s) 1115
ErhI CCWWGG 1 cut(s) 1089
FaeI CATG 6 cut(s) 464, 550, 562, 668, 1093, 1239
FalI AAGNNNNNCTT 6 cut(s) 449, 481, 786, 818, 930, 962
FatI CATG 6 cut(s) 460, 546, 558, 664, 1089, 1235
FauNDI CATATG 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 1263, 1329
FokI GGATG 7 cut(s) 414, 424, 563, 696, 702, 741, 1068
Fsp4HI GCNGC 2 cut(s) 1263, 1329
FspBI CTAG 7 cut(s) 90, 105, 149, 507, 603, 1104, 1365
GlaI GCGC 2 cut(s) 368, 945
GluI GCNGC 2 cut(s) 1263, 1329
HaeII RGCGCY 1 cut(s) 370
HaeIII GGCC 2 cut(s) 903, 1094
HapII CCGG 2 cut(s) 413, 429
HhaI GCGC 2 cut(s) 369, 946
Hin1II CATG 6 cut(s) 464, 550, 562, 668, 1093, 1239
Hin6I GCGC 2 cut(s) 367, 944
HinP1I GCGC 2 cut(s) 367, 944
HinfI GANTC 9 cut(s) 80, 108, 188, 220, 270, 317, 343, 1212, 1276
HpaII CCGG 2 cut(s) 413, 429
HphI GGTGA 2 cut(s) 363, 1349
Hpy166II GTNNAC 2 cut(s) 408, 978
Hpy188I TCNGA 3 cut(s) 589, 813, 850
Hpy188III TCNNGA 3 cut(s) 217, 321, 1273
Hpy8I GTNNAC 2 cut(s) 408, 978
Hpy99I CGWCG 4 cut(s) 311, 1007, 1220, 1328
HpyAV CCTTC 3 cut(s) 149, 238, 1074
HpyCH4III ACNGT 2 cut(s) 227, 975
HpyCH4IV ACGT 4 cut(s) 818, 1122, 1154, 1323
HpyCH4V TGCA 7 cut(s) 575, 611, 732, 776, 950, 1113, 1262
HpyF10VI GCNNNNNNNGC 2 cut(s) 434, 837
HpyF3I CTNAG 5 cut(s) 231, 319, 521, 673, 1286
HpySE526I ACGT 4 cut(s) 818, 1122, 1154, 1323
Hsp92II CATG 6 cut(s) 464, 550, 562, 668, 1093, 1239
HspAI GCGC 2 cut(s) 367, 944
Kzo9I GATC 4 cut(s) 598, 1137, 1204, 1345
Lsp1109I GCAGC 2 cut(s) 1274, 1315
LweI GCATC 6 cut(s) 268, 446, 674, 719, 841, 931
MaeI CTAG 7 cut(s) 90, 105, 149, 507, 603, 1104, 1365
MaeII ACGT 4 cut(s) 818, 1122, 1154, 1323
MaeIII GTNAC 4 cut(s) 100, 139, 509, 1078
MalI GATC 4 cut(s) 600, 1139, 1206, 1347
MboI GATC 4 cut(s) 598, 1137, 1204, 1345
MboII GAAGA 7 cut(s) 164, 535, 670, 950, 1052, 1089, 1183
MflI RGATCY 2 cut(s) 598, 1137
MlsI TGGCCA 1 cut(s) 903
MluCI AATT 5 cut(s) 119, 331, 636, 870, 1223
MluNI TGGCCA 1 cut(s) 903
MlyI GAGTC 3 cut(s) 264, 311, 1270
MmeI TCCRAC 2 cut(s) 791, 1145
Mox20I TGGCCA 1 cut(s) 903
Mph1103I ATGCAT 1 cut(s) 1115
MscI TGGCCA 1 cut(s) 903
MseI TTAA 5 cut(s) 74, 390, 467, 635, 768
Msp20I TGGCCA 1 cut(s) 903
MspA1I CMGCKG 1 cut(s) 1265
MspI CCGG 2 cut(s) 413, 429
MspR9I CCNGG 3 cut(s) 413, 1050, 1317
MvaI CCWGG 2 cut(s) 1050, 1317
MwoI GCNNNNNNNGC 2 cut(s) 434, 837
NciI CCSGG 1 cut(s) 413
NcoI CCATGG 1 cut(s) 1089
NdeI CATATG 1 cut(s) 60
NdeII GATC 4 cut(s) 598, 1137, 1204, 1345
NlaIII CATG 6 cut(s) 464, 550, 562, 668, 1093, 1239
NlaIV GGNNCC 3 cut(s) 410, 600, 1139
NmuCI GTSAC 1 cut(s) 509
NsiI ATGCAT 1 cut(s) 1115
NspI RCATGY 1 cut(s) 464
PasI CCCWGGG 1 cut(s) 1316
PfeI GAWTC 6 cut(s) 80, 108, 188, 220, 343, 1212
PkrI GCNGC 2 cut(s) 1264, 1330
PleI GAGTC 3 cut(s) 264, 311, 1270
PpsI GAGTC 3 cut(s) 264, 311, 1270
Psp1406I AACGTT 1 cut(s) 1122
Psp6I CCWGG 2 cut(s) 1048, 1315
PspGI CCWGG 2 cut(s) 1048, 1315
PspN4I GGNNCC 3 cut(s) 410, 600, 1139
PspPI GGNCC 2 cut(s) 64, 408
PsuI RGATCY 2 cut(s) 598, 1137
PvuII CAGCTG 1 cut(s) 1265
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
SaqAI TTAA 5 cut(s) 74, 390, 467, 635, 768
SatI GCNGC 2 cut(s) 1263, 1329
Sau3AI GATC 4 cut(s) 598, 1137, 1204, 1345
Sau96I GGNCC 2 cut(s) 64, 408
SchI GAGTC 3 cut(s) 264, 311, 1270
ScrFI CCNGG 3 cut(s) 413, 1050, 1317
SfaNI GCATC 6 cut(s) 268, 446, 674, 719, 841, 931
SfcI CTRYAG 1 cut(s) 971
SinI GGWCC 2 cut(s) 64, 408
SmlI CTYRAG 2 cut(s) 215, 486
SmoI CTYRAG 2 cut(s) 215, 486
Sse9I AATT 5 cut(s) 119, 331, 636, 870, 1223
SsiI CCGC 3 cut(s) 687, 896, 1354
SspI AATATT 3 cut(s) 449, 579, 1244
SspMI CTAG 7 cut(s) 90, 105, 149, 507, 603, 1104, 1365
StyD4I CCNGG 3 cut(s) 411, 1048, 1315
StyI CCWWGG 1 cut(s) 1089
TaaI ACNGT 2 cut(s) 227, 975
TaiI ACGT 4 cut(s) 821, 1125, 1157, 1326
TaqI TCGA 5 cut(s) 309, 493, 1203, 1215, 1251
TaqII GACCGA 1 cut(s) 527
TasI AATT 5 cut(s) 119, 331, 636, 870, 1223
TatI WGTACW 1 cut(s) 564
TfiI GAWTC 6 cut(s) 80, 108, 188, 220, 343, 1212
Tru1I TTAA 5 cut(s) 74, 390, 467, 635, 768
Tru9I TTAA 5 cut(s) 74, 390, 467, 635, 768
TscAI CASTG 2 cut(s) 295, 745
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 2 cut(s) 1262, 1328
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 5 cut(s) 112, 160, 535, 1018, 1216
TspGWI ACGGA 2 cut(s) 430, 1049
TspRI CASTG 2 cut(s) 295, 745
VpaK11BI GGWCC 2 cut(s) 64, 408
XapI RAATTY 2 cut(s) 331, 1223
XceI RCATGY 1 cut(s) 464
XspI CTAG 7 cut(s) 90, 105, 149, 507, 603, 1104, 1365
Zsp2I ATGCAT 1 cut(s) 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.