RchiOBHm_Chr4g0394931

Mycolic acid cyclopropane synthetase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000555
Physical Location & Seq
Reverse (-)
10722316 .. 10723034
719 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36740

Sequence Viewer

Length: 447 bp
ATGTATTCTACTTTCTCAACTTCGATCCTGCATTGCCTGTGCCACTTGTTTTATCTTCTTCTGTCTTCTATCTTACTAGAAGAGGGAGGCACAATGTTCACCTTTGAGGGAAGCAAAAAGGACTGTTCTCTAAAATCCGTTCTTATAGTTCATAGTCCTCAGTTTTATTGGAAAGTAATGACACAGGCTGATCTAGGCATTACAGATGCATATATCAATTGCGATTTTTCTTTCCATGATAAAGACCGAGGTCTTCTAAATCTTCTTATGGTAAGACAATTGAACATTAATTGCAATCTCATTCTCCTTATTATGCAGATTTTGATAAAATTTTGCCTTGCTGTTTCTTCTTCCAGTTTCTCATTGCCAACGAAGATTCTAATGCCTCAAAATCAAACAAGAAAAGGTGCAATGCACCGATTATCTCAAACTAGAATTGTGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase CMAS NAD_binding_8

Protein Analysis

148

Amino Acids

16.87

Weight (kDa)

8.8

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica MD16G1224400.v1.1
prunus_persica Prupe.1G045800_v2.0.a1
pyrus_communis pycom16g18780
rosa_chinensis RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 19
AcsI RAATTY 1 cut(s) 329
AgsI TTSAA 1 cut(s) 283
AlwI GGATC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 329
AseI ATTAAT 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 91
BbsI GAAGAC 2 cut(s) 57, 245
BfaI CTAG 3 cut(s) 77, 194, 432
BmsI GCATC 1 cut(s) 196
BoxI GACNNNNGTC 1 cut(s) 249
BpiI GAAGAC 2 cut(s) 57, 245
BsaJI CCNNGG 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 354
Bse3DI GCAATG 3 cut(s) 31, 362, 417
BseDI CCNNGG 1 cut(s) 247
BseMI GCAATG 3 cut(s) 31, 362, 417
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 354
Bsp143I GATC 2 cut(s) 24, 190
BspCNI CTCAG 1 cut(s) 172
BspPI GGATC 1 cut(s) 19
BsrDI GCAATG 3 cut(s) 31, 362, 417
BsrI ACTGG 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 2 cut(s) 24, 190
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 159
BstKTI GATC 2 cut(s) 27, 193
BstMBI GATC 2 cut(s) 24, 190
BstPAI GACNNNNGTC 1 cut(s) 249
BstV2I GAAGAC 2 cut(s) 57, 245
CviAII CATG 1 cut(s) 236
CviJI RGCY 1 cut(s) 188
CviKI_1 RGCY 1 cut(s) 188
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 26, 192
DpnII GATC 2 cut(s) 24, 190
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
EcoT22I ATGCAT 1 cut(s) 211
FaeI CATG 1 cut(s) 239
FaiI YATR 8 cut(s) 146, 153, 211, 213, 237, 269, 314, 445
FatI CATG 1 cut(s) 235
FspBI CTAG 3 cut(s) 77, 194, 432
Hin1II CATG 1 cut(s) 239
HinfI GANTC 1 cut(s) 376
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 99
Hpy8I GTNNAC 1 cut(s) 99
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 6 cut(s) 31, 209, 294, 316, 410, 415
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 1 cut(s) 239
Kzo9I GATC 2 cut(s) 24, 190
LpnPI CCDG 4 cut(s) 41, 50, 170, 367
LweI GCATC 1 cut(s) 196
MaeI CTAG 3 cut(s) 77, 194, 432
MalI GATC 2 cut(s) 26, 192
MboI GATC 2 cut(s) 24, 190
MboII GAAGA 9 cut(s) 47, 50, 57, 92, 245, 254, 339, 342, 385
MfeI CAATTG 2 cut(s) 217, 278
MluCI AATT 5 cut(s) 217, 278, 289, 329, 435
MnlI CCTC 6 cut(s) 76, 80, 100, 168, 242, 396
Mph1103I ATGCAT 1 cut(s) 211
MseI TTAA 1 cut(s) 288
MunI CAATTG 2 cut(s) 217, 278
NdeII GATC 2 cut(s) 24, 190
NlaIII CATG 1 cut(s) 239
NsiI ATGCAT 1 cut(s) 211
PfeI GAWTC 1 cut(s) 376
PshAI GACNNNNGTC 1 cut(s) 249
PshBI ATTAAT 1 cut(s) 288
SaqAI TTAA 1 cut(s) 288
Sau3AI GATC 2 cut(s) 24, 190
SetI ASST 3 cut(s) 104, 253, 409
SfaNI GCATC 1 cut(s) 196
Sse9I AATT 5 cut(s) 217, 278, 289, 329, 435
SspMI CTAG 3 cut(s) 77, 194, 432
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 23
TaqII GACCGA 1 cut(s) 261
TasI AATT 5 cut(s) 217, 278, 289, 329, 435
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TspDTI ATGAA 1 cut(s) 140
TspGWI ACGGA 1 cut(s) 127
VspI ATTAAT 1 cut(s) 288
XapI RAATTY 1 cut(s) 329
XspI CTAG 3 cut(s) 77, 194, 432
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.