Rorug01G0197800

Mycolic acid cyclopropane synthetase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000555
Physical Location & Seq
Reverse (-)
27725575 .. 27728073
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0197800.1

Sequence Viewer

Length: 321 bp
ATGGCTTCAGACTATCTTCTCTCAACCCAGATTAGGAGAGTTATTCCGTGGTCTGGGGATTTAGAGTACAAAGCAGAAGCTTTAAAAGACCAAGAGTCTTCTTATAATGAGAAGTTATGCAATGATTTTTCGGTTCCCAAGGAGAGGCCGGAGAACTTCAAAGGGGTTGATGTTAAATATGAAGAGATAATTGAAGCAACTTCAATTGGCTCCAGCAAAGTCTTATGGTCCTGCACTGCTCAGTTGCGGCTGCTACTGACAGGAGACAATTTCTATGATATAAGATTAAGATTTATGTACTGCCATGAGCCTCCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase CMAS NAD_binding_8

Protein Analysis

106

Amino Acids

12.3

Weight (kDa)

4.97

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica MD16G1224400.v1.1
prunus_persica Prupe.1G045800_v2.0.a1
pyrus_communis pycom16g18780
rosa_chinensis RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
AciI CCGC 1 cut(s) 247
AfaI GTAC 2 cut(s) 68, 299
AfiI CCNNNNNNNGG 3 cut(s) 33, 53, 144
AgsI TTSAA 3 cut(s) 160, 194, 204
AhdI GACNNNNNGTC 1 cut(s) 94
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 258
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 228
AvaII GGWCC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 258
BisI GCNGC 2 cut(s) 248, 251
BlsI GCNGC 2 cut(s) 249, 252
Bme18I GGWCC 1 cut(s) 228
BmeRI GACNNNNNGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 228
BmiI GGNNCC 2 cut(s) 135, 211
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 47, 138
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 53, 144
Bse3DI GCAATG 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 47, 138
BseLI CCNNNNNNNGG 3 cut(s) 33, 53, 144
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 237
BsgI GTGCAG 1 cut(s) 217
BshFI GGCC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 149
BslI CCNNNNNNNGG 3 cut(s) 33, 53, 144
BsmAI GTCTC 1 cut(s) 258
BsnI GGCC 1 cut(s) 148
BspACI CCGC 1 cut(s) 247
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 135, 211
BsrDI GCAATG 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 47, 138
BssT1I CCWWGG 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 47
BstMAI GTCTC 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 148
BtgI CCRYGG 1 cut(s) 47
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 228
Csp6I GTAC 2 cut(s) 67, 298
CviAII CATG 1 cut(s) 305
CviJI RGCY 6 cut(s) 5, 80, 148, 210, 250, 310
CviKI_1 RGCY 6 cut(s) 5, 80, 148, 210, 250, 310
CviQI GTAC 2 cut(s) 67, 298
DdeI CTNAG 1 cut(s) 240
DraI TTTAAA 1 cut(s) 84
DriI GACNNNNNGTC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 177
Eam1105I GACNNNNNGTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 1 cut(s) 308
FaiI YATR 8 cut(s) 105, 118, 180, 226, 276, 281, 296, 306
FatI CATG 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 248, 251
Fsp4HI GCNGC 2 cut(s) 248, 251
GluI GCNGC 2 cut(s) 248, 251
GsuI CTGGAG 1 cut(s) 196
HaeIII GGCC 1 cut(s) 148
HapII CCGG 1 cut(s) 149
Hin1II CATG 1 cut(s) 308
HindIII AAGCTT 1 cut(s) 78
HinfI GANTC 1 cut(s) 95
HpaII CCGG 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 120, 234
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 1 cut(s) 308
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 6 cut(s) 39, 41, 162, 226, 244, 246
Lsp1109I GCAGC 1 cut(s) 237
MboII GAAGA 3 cut(s) 8, 90, 194
MfeI CAATTG 1 cut(s) 204
MluCI AATT 3 cut(s) 189, 204, 268
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 2 cut(s) 138, 321
MseI TTAA 3 cut(s) 83, 174, 287
MspI CCGG 1 cut(s) 149
MunI CAATTG 1 cut(s) 204
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 2 cut(s) 135, 211
PkrI GCNGC 2 cut(s) 249, 252
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PsiI TTATAA 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 135, 211
PspPI GGNCC 1 cut(s) 228
RsaI GTAC 2 cut(s) 68, 299
RsaNI GTAC 2 cut(s) 67, 298
SaqAI TTAA 3 cut(s) 83, 174, 287
SatI GCNGC 2 cut(s) 248, 251
Sau96I GGNCC 1 cut(s) 228
SchI GAGTC 1 cut(s) 104
SetI ASST 1 cut(s) 82
SinI GGWCC 1 cut(s) 228
Sse9I AATT 3 cut(s) 189, 204, 268
SsiI CCGC 1 cut(s) 247
StyI CCWWGG 1 cut(s) 138
TasI AATT 3 cut(s) 189, 204, 268
TatI WGTACW 2 cut(s) 66, 297
TauI GCSGC 1 cut(s) 250
Tru1I TTAA 3 cut(s) 83, 174, 287
Tru9I TTAA 3 cut(s) 83, 174, 287
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.