RLG00000027657

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000555
Physical Location & Seq
Reverse (-)
13635697 .. 13641457
5761 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027657

Sequence Viewer

Length: 1275 bp
ATGGTGCAAACCTTTGAGGGAAGCAATAAAGGCTGTTCTTTGAAATCTGTTATTAAAGTTCATAACCCCGTTCAATTTTACTGGAAGGTAATGACACGGGCAGATTTAGGCCTTGCAGATGCATATATCAATGGCGATTTTTCTTTTGATGATAAAGACAACGGTCTTGAGAATCTCTTAATGATTCTCATTGCCAACAGAGATTCAAATTGTTCCCTCTCAAAAATGAATAAGAAAAGAGGAAGGTGGATGCCCTTGTTAAAGGAAGCTTGTTTAGCCCCAGCAAGATATCTCTTTCATCACGTTTCAAGGCAAAACTCTCTTACAGAGGCTCGAAGGAACATCTCTCACCATTATGATCTGAGTAATGAATTTTTTTCGCTGTTCATGGACGAAACAATGATGTATTCCGCTGCTTTATTTAAGAAAGAAGATGAAGAGTTGAAGACTGCAGAGCTAAGGAAAATCAGTATTCTCATTGAAAAGGCTAAAATTAATAAGAACCATGAAGTCCTAGAGTTGGGCTGTGGTTGGGGAGGCTTCGCCATTGAAGTCGTCAAGCAAACCGGTTGTAGATACACTAGCATAACTTTGTCGAAGGAACAAGTGCAATTTTCTGAAAAGAAAGTGAAAGATGCTGGCCTTCAGGAAAGCATCAAAATTATGCTGCGTGACTACCGCGAATTGCCTCAGAACTACAAATATGACAGAATTATTTGTTATGAGATGCTAGAACATGTCGGCCATGAATTTATGGAGGAATTCTTTGCTGGTTGTGACTCTATGCTAGCAGAAAATGGGCTTCTTATTCTACAGTTCACATTCTTTCCGGATGAGCGTTACGATGAGTATAGGCGAAGTTCAGACTTCATAAAGGAGTATATTTTTCCGGGTGGATTGTTACCTTCATTAAGTAGGGTAACATCAGCTATGGTTGCTTCTTCCAGGTTCAGTGTGCAGCACTTGGAAAACATTGGAATTCATTATTACCAACCACTAAGATATTGGAGAAAAACATTCTCGGAGAAACATAGTGAAATACTAGCTCTTGGATTCGATGAAAAATTTATTCGGACATGGGAGTATTATTTTGATTATTGTGCGGCAGGATTCAACTCTTGTACTCTTGGAAATTACCAGCAAGCACTTACCAGCAAGAATAGCGACGGCGAGGCATTGGGTTTCAATTTCGAGACTGTGGAAGTCGATGTGGGATGTGAATTGATGGACAAGATGAGGGCTTTTGTGGAGGTCGAAGAGGGCGTGGGAGATTAG

Protein Analysis

425

Amino Acids

49.1

Weight (kDa)

5.6

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 108 - 374 1.7e-75 Mycolic acid cyclopropane synthetase
MTS PF05175 158 - 271 3.6e-08 Methyltransferase small domain
Methyltransf_23 PF13489 163 - 273 5.1e-09 Methyltransferase domain
Methyltransf_31 PF13847 166 - 270 2.7e-08 Methyltransferase domain
Methyltransf_25 PF13649 171 - 267 1.3e-13 Methyltransferase domain
Methyltransf_11 PF08241 172 - 271 3e-11 Methyltransferase domain
Methyltransf_12 PF08242 172 - 269 4.7e-10 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica MD16G1224400.v1.1
prunus_persica Prupe.1G045800_v2.0.a1
pyrus_communis pycom16g18780
rosa_chinensis RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 681
AccIII TCCGGA 1 cut(s) 829
AciI CCGC 3 cut(s) 411, 679, 1103
AcoI YGGCCR 1 cut(s) 742
AcsI RAATTY 5 cut(s) 371, 749, 761, 978, 1064
AcuI CTGAAG 1 cut(s) 629
AfaI GTAC 1 cut(s) 1123
AfiI CCNNNNNNNGG 1 cut(s) 520
AflIII ACRYGT 1 cut(s) 736
AgeI ACCGGT 1 cut(s) 566
AgsI TTSAA 9 cut(s) 43, 74, 207, 309, 445, 482, 551, 1114, 1186
AjnI CCWGG 1 cut(s) 944
AluBI AGCT 4 cut(s) 269, 457, 929, 1046
AluI AGCT 4 cut(s) 269, 457, 929, 1046
Alw26I GTCTC 1 cut(s) 1187
Aor13HI TCCGGA 1 cut(s) 829
AoxI GGCC 3 cut(s) 109, 640, 742
ApeKI GCWGC 3 cut(s) 413, 667, 958
ApoI RAATTY 5 cut(s) 371, 749, 761, 978, 1064
AseI ATTAAT 1 cut(s) 495
AsiGI ACCGGT 1 cut(s) 566
AsuC2I CCSGG 1 cut(s) 891
AsuHPI GGTGA 1 cut(s) 341
AsuNHI GCTAGC 1 cut(s) 787
BbsI GAAGAC 1 cut(s) 452
BbvI GCAGC 3 cut(s) 400, 654, 970
BccI CCATC 1 cut(s) 1219
BceAI ACGGC 1 cut(s) 1183
BciT130I CCWGG 1 cut(s) 946
BcnI CCSGG 1 cut(s) 891
BcoDI GTCTC 1 cut(s) 1187
BfaI CTAG 5 cut(s) 515, 582, 731, 788, 1043
BfmI CTRYAG 2 cut(s) 450, 812
BisI GCNGC 4 cut(s) 414, 668, 959, 1104
BlsI GCNGC 4 cut(s) 415, 669, 960, 1105
Bme1390I CCNGG 2 cut(s) 891, 946
BmrFI CCNGG 2 cut(s) 891, 946
BmsI GCATC 5 cut(s) 109, 240, 625, 663, 717
BmtI GCTAGC 1 cut(s) 791
BoxI GACNNNNGTC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 452
Bpu10I CCTNAGC 1 cut(s) 458
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 891
BsaWI WCCGGW 2 cut(s) 566, 829
Bsc4I CCNNNNNNNGG 1 cut(s) 520
Bse118I RCCGGY 1 cut(s) 566
Bse1I ACTGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 189
BseAI TCCGGA 1 cut(s) 829
BseBI CCWGG 1 cut(s) 946
BseGI GGATG 3 cut(s) 255, 838, 1220
BseLI CCNNNNNNNGG 1 cut(s) 520
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 2 cut(s) 353, 704
BseNI ACTGG 1 cut(s) 86
BseXI GCAGC 3 cut(s) 400, 654, 970
BseYI CCCAGC 1 cut(s) 280
BsgI GTGCAG 1 cut(s) 977
Bsh1236I CGCG 1 cut(s) 681
BshFI GGCC 3 cut(s) 111, 642, 744
BshTI ACCGGT 1 cut(s) 566
BsiSI CCGG 3 cut(s) 567, 830, 890
BslI CCNNNNNNNGG 1 cut(s) 520
BsmAI GTCTC 1 cut(s) 1187
BsnI GGCC 3 cut(s) 111, 642, 744
Bsp13I TCCGGA 1 cut(s) 829
Bsp143I GATC 1 cut(s) 358
BspACI CCGC 3 cut(s) 411, 679, 1103
BspANI GGCC 3 cut(s) 111, 642, 744
BspCNI CTCAG 2 cut(s) 354, 703
BspEI TCCGGA 1 cut(s) 829
BspFNI CGCG 1 cut(s) 681
BspMAI CTGCAG 1 cut(s) 454
BspOI GCTAGC 1 cut(s) 791
BsrDI GCAATG 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 566
BsrI ACTGG 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 566
BssMI GATC 1 cut(s) 358
Bst2UI CCWGG 1 cut(s) 946
Bst4CI ACNGT 3 cut(s) 164, 816, 1198
Bst6I CTCTTC 2 cut(s) 432, 1251
BstC8I GCNNGC 3 cut(s) 640, 789, 1143
BstDEI CTNAG 4 cut(s) 362, 458, 690, 998
BstF5I GGATG 3 cut(s) 255, 838, 1220
BstFNI CGCG 1 cut(s) 681
BstKTI GATC 1 cut(s) 361
BstMAI GTCTC 1 cut(s) 1187
BstMBI GATC 1 cut(s) 358
BstMWI GCNNNNNNNGC 4 cut(s) 30, 275, 935, 1161
BstNI CCWGG 1 cut(s) 946
BstNSI RCATGY 1 cut(s) 740
BstPAI GACNNNNGTC 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 889, 944
BstSFI CTRYAG 2 cut(s) 450, 812
BstUI CGCG 1 cut(s) 681
BstV1I GCAGC 3 cut(s) 400, 654, 970
BstV2I GAAGAC 1 cut(s) 452
BsuRI GGCC 3 cut(s) 111, 642, 744
BtsCI GGATG 3 cut(s) 255, 838, 1220
BtsIMutI CAGTG 1 cut(s) 958
Cac8I GCNNGC 3 cut(s) 640, 789, 1143
Cfr10I RCCGGY 1 cut(s) 566
Csp6I GTAC 1 cut(s) 1122
CspAI ACCGGT 1 cut(s) 566
CviAII CATG 5 cut(s) 388, 506, 737, 746, 1077
CviQI GTAC 1 cut(s) 1122
DdeI CTNAG 4 cut(s) 362, 458, 690, 998
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
EaeI YGGCCR 1 cut(s) 742
Eam1104I CTCTTC 2 cut(s) 432, 1251
EarI CTCTTC 2 cut(s) 432, 1251
Eco147I AGGCCT 1 cut(s) 111
Eco32I GATATC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 629
EcoRI GAATTC 2 cut(s) 761, 978
EcoRII CCWGG 1 cut(s) 944
EcoRV GATATC 1 cut(s) 290
EcoT22I ATGCAT 1 cut(s) 124
FaeI CATG 5 cut(s) 391, 509, 740, 749, 1080
FatI CATG 5 cut(s) 387, 505, 736, 745, 1076
Fnu4HI GCNGC 4 cut(s) 414, 668, 959, 1104
FokI GGATG 3 cut(s) 262, 845, 1227
Fsp4HI GCNGC 4 cut(s) 414, 668, 959, 1104
FspBI CTAG 5 cut(s) 515, 582, 731, 788, 1043
GluI GCNGC 4 cut(s) 414, 668, 959, 1104
GsaI CCCAGC 1 cut(s) 284
HaeIII GGCC 3 cut(s) 111, 642, 744
HapII CCGG 3 cut(s) 567, 830, 890
Hin1II CATG 5 cut(s) 391, 509, 740, 749, 1080
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 6 cut(s) 172, 184, 203, 779, 1053, 1110
HpaII CCGG 3 cut(s) 567, 830, 890
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 819
Hpy188I TCNGA 6 cut(s) 363, 619, 693, 865, 1024, 1074
Hpy188III TCNNGA 4 cut(s) 167, 647, 830, 1192
Hpy8I GTNNAC 1 cut(s) 819
Hpy99I CGWCG 1 cut(s) 1169
HpyAV CCTTC 6 cut(s) 79, 237, 330, 592, 653, 915
HpyCH4III ACNGT 3 cut(s) 164, 816, 1198
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 6 cut(s) 7, 116, 122, 452, 610, 958
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 275, 935, 1161
HpyF3I CTNAG 4 cut(s) 362, 458, 690, 998
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 5 cut(s) 391, 509, 740, 749, 1080
Kpn2I TCCGGA 1 cut(s) 829
Kzo9I GATC 1 cut(s) 358
Lsp1109I GCAGC 3 cut(s) 400, 654, 970
LweI GCATC 5 cut(s) 109, 240, 625, 663, 717
MaeI CTAG 5 cut(s) 515, 582, 731, 788, 1043
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 5 cut(s) 671, 776, 839, 900, 919
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 5 cut(s) 443, 449, 457, 933, 1268
MlyI GAGTC 1 cut(s) 773
Mph1103I ATGCAT 1 cut(s) 124
MroI TCCGGA 1 cut(s) 829
MseI TTAA 6 cut(s) 54, 179, 260, 423, 495, 911
MslI CAYNNNNRTG 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 3 cut(s) 567, 830, 890
MspR9I CCNGG 2 cut(s) 891, 946
MvaI CCWGG 1 cut(s) 946
MvnI CGCG 1 cut(s) 681
MwoI GCNNNNNNNGC 4 cut(s) 30, 275, 935, 1161
NciI CCSGG 1 cut(s) 891
NdeII GATC 1 cut(s) 358
NheI GCTAGC 1 cut(s) 787
NlaIII CATG 5 cut(s) 391, 509, 740, 749, 1080
NmuCI GTSAC 2 cut(s) 671, 776
NsiI ATGCAT 1 cut(s) 124
NspI RCATGY 1 cut(s) 740
PceI AGGCCT 1 cut(s) 111
PciI ACATGT 1 cut(s) 736
PcsI WCGNNNNNNNCGW 1 cut(s) 1260
PfeI GAWTC 5 cut(s) 172, 184, 203, 1053, 1110
PinAI ACCGGT 1 cut(s) 566
PkrI GCNGC 4 cut(s) 415, 669, 960, 1105
PleI GAGTC 1 cut(s) 773
PpsI GAGTC 1 cut(s) 773
PscI ACATGT 1 cut(s) 736
PshAI GACNNNNGTC 1 cut(s) 162
PshBI ATTAAT 1 cut(s) 495
Psp6I CCWGG 1 cut(s) 944
PspFI CCCAGC 1 cut(s) 280
PspGI CCWGG 1 cut(s) 944
PstI CTGCAG 1 cut(s) 454
RsaI GTAC 1 cut(s) 1123
RsaNI GTAC 1 cut(s) 1122
RseI CAYNNNNRTG 1 cut(s) 354
SaqAI TTAA 6 cut(s) 54, 179, 260, 423, 495, 911
SatI GCNGC 4 cut(s) 414, 668, 959, 1104
Sau3AI GATC 1 cut(s) 358
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 2 cut(s) 891, 946
SfaNI GCATC 5 cut(s) 109, 240, 625, 663, 717
SfcI CTRYAG 2 cut(s) 450, 812
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 3 cut(s) 411, 679, 1103
SspMI CTAG 5 cut(s) 515, 582, 731, 788, 1043
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 889, 944
TaaI ACNGT 3 cut(s) 164, 816, 1198
TaiI ACGT 1 cut(s) 306
TaqI TCGA 6 cut(s) 334, 596, 1056, 1191, 1206, 1254
TatI WGTACW 1 cut(s) 1121
TauI GCSGC 1 cut(s) 1106
TfiI GAWTC 5 cut(s) 172, 184, 203, 1053, 1110
Tru1I TTAA 6 cut(s) 54, 179, 260, 423, 495, 911
Tru9I TTAA 6 cut(s) 54, 179, 260, 423, 495, 911
TscAI CASTG 1 cut(s) 958
TseFI GTSAC 2 cut(s) 671, 776
TseI GCWGC 3 cut(s) 413, 667, 958
Tsp45I GTSAC 2 cut(s) 671, 776
TspRI CASTG 1 cut(s) 958
VspI ATTAAT 1 cut(s) 495
XapI RAATTY 5 cut(s) 371, 749, 761, 978, 1064
XceI RCATGY 1 cut(s) 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 1002
XspI CTAG 5 cut(s) 515, 582, 731, 788, 1043
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.