Rorug04G0078200

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000555
Physical Location & Seq
Reverse (-)
12044125 .. 12047610
3486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0078200.1

Sequence Viewer

Length: 2784 bp
ATGTCCGCCTTATCCGCTCGCCGCCTCAAAGACCGCGGCGGAGTCGCCGCACCCACCAAACCCGAAAGGAGATCCTCCAGCGTCGGCAAAGAAAACCCGCCCGGGCCCACTTTCCGGACTTCGGCCCAGAAGCCCACCATGCGGCCCGTTCCACGTGTCGACAAGGCGGCGGCGAATACCACCGGCGATGCGCGTGCGCGGTGGTCCATGCCTTCTGTGGCGAAAGGTAGGAGCTCTAGCCCTTCTGGGTTTTTTAGGGTTGCCGCGTCGGGAAATGTTGGGCCGAAGAATCGGAGGGTTTCGGCGGATCGGGTCGAGAGGGGTCCGAGTCCGGGTTCGGGTTTGGGCGAGAGGGAACGGTCCGGGAGTGCAGGGAGGAGTTTGAGTAGGGGAAGAGGATCAGGGGTTAGGGATTTGGAAGTCAAAGTTGGTCAATTGGGGGTTAGGGTTTTCAGGGATTTGAAAGATGATGGTAAAATTGGGGTGAAAAAGAATGGAACTTGTGGAGAACTGGAAGTGAAATCGGTGGAGATTGAGAAGAATTTGAGTGGGATTAGGTCTAGGGTTTTGGGCAGTTGTGATGGAGTAGCTAATTTGAAAAACCCAGATGGGGTTGATGGTAGGGTTTTGGAGAGATGCAATAGTGGAAAGAGTAGAAGTAGTGATATTGGGAATCGGGCTGGTTTGGGATTGAAGGAGTCGAGTGAGAAATGTGTGAGCAATGGGAAGGTTTTGGAGGGTTTGAAAGAGAAGGGGTTGAAGGAAGAGGGAAGTAATGGCGGTCCAGTTGGTATAAAACATCCTAGTAAGCTTCATGAGAAGCTTGCTTTCTTGGAAGGGAAGGTGAAGAGGATTGCGTCTGATATAAAGAAGACTAAGGAGATATTGGATATGAATAACCCAGATGCATCGAAGGTGATACTTTCTGATATTCAGGAGAAGATTACAGGGATTGAGAAGGCCATGGTACATGTTTCCAATGGCTCTGGTGGTAAGGTGTTGAAAGGTAATGAGCAGGATCACCAGGACGCCAAAGTGGTTGAGAACGGTCACATCGAGCAGGTGTGTAATGTGAAGAGTTCGGTAAAGGGTTTGAATCGTGAGGACTTGGAAGCTAGACTCTTTCCTCATCATAAGTTGATTAGAAACCGCACAGCCTTGAAAGCATCATCAGAAAGTTCTCAATGTCAAGTAGTTGAAACCAGTTGTGAATCAAAAGTGGATGAAAAGACAGTGTGCCTTATGGATGAGAACCCAATTGCTATAGAGTTTTTGGCTTCCTTGGATAATGAGCAAACTCAAGTTACAACAAGGGATGGACACGAGGATTTGGAAAATTGTGAGGTTCAAGCTGTGGATGGTGCCACCACTGCAGGAGTTGAAAAATCTTCAAAAATGGTCACTGGTAAGCAGGATGATGAGCTCATTCTCACAACTGATGAAACACTTGATGAGTCCGGTGATCAGGAGAATAGACAAGTGATCATTGATGAGGAAACTGAGGATACTAGCATTTACCAGCTCAATGGAATAGGCCAAAAGACCTCAACTGGTGGGTGGTTTATGTCTGAGGGAGAGTCAGTTCTTCTTGCTCATGATGATGGTTCGTGCACCTTCTATGATATTGTAAACTCCGAGGAAAAGGCTTTGTACAAGCCTCCTGCAGGAGTTTCACCTAATATGTGGAGAGATTGCTGGATCATCCGAGCTCCTAGTGCAGATGGTTGCTCAGGAAGGTATGTCGTGGCTGCATCTGCTGGAAACACGATGGATTCAGGTTTTTGCTCATGGGATTTTTATGCCAAAGATGTGTGTGCTTTCCATATTGACGATGGTTTAGCCCTGTCAAGGACAGTACTTGGCCCCTTGCCCGACAACATCTCATACAGAAGAAACACTTTGTCTAATCTTTTGGATCCAGAAACTCAACAATGGTGGTATAGACCTTGCGGACCTCTTATTGTCTCATCTGCCACCTGTCAGAGAGTTGTGAGAATCTATGACATTCGTGACGGTGAGCAAGTTATGAAATGGGATGTACCGAAGCCTGTGTTAACAATGGATAACTCAAGCCCCTTGCAGTGGAGAAACAGAGGAAAAGTTGTTGTAGCTGACATTGAAACAATTTCCATCTGGGATGTGAACTCTCTCAACCCTCAACCTTTATTATCTGTTTCTTCTGCTGGTCGGAAAATCTCTGCTCTTCATGTGAATAACACTGACTCTGAACTTGGTGGCGGAGTTCGCCAAAGGGTAAGTTCAGCAGAAGCAGAAGGAAATGATGGAGTGTTCTGTACCCAGGATTCAATAAACATTCTAGACTTTCGCAATCCGTCTGGTATAGGTCTGAAAATACCAAAGCTTGGTGTAACAGCACAGTCAGTTTTCTCTCGTGGAGATTCCATCTTCCTTGGCTGCCCCAATGGAAGGTCTGGATGGAAAAAACAGTCCTCTTCACAAGTGCAACAGTTTTCAATTCGAAAACAAAGGCTAATAAGCACTTACGCCTTGCCAGAATCAAATGCTCACAGCCATCACACAGCTATTACGCAAGTATGGGGGAACTCAAACCTAGTCATGGGTGTTTGTGGATTGGGGCTGTTTGTGTTTGATGCCTTAAAGGATGACGGTGTGCCGTCTTTCACCAATGATAGTGGAAGCAATCAAAAAGATTGTGAAGTCATTGGCCCAGATGACTTGTATGCACCTTCTTTTGATTACATGGACTCTCGTGCTCTTATCATATCAAGAGATCGCCCAGCATTATGGAGGCACTTATCGTAG

Protein Analysis

927

Amino Acids

100.52

Weight (kDa)

6.95

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_At4g14310 PF25465 640 - 922 8.7e-156 At4g14310 8-bladed propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica MD16G1224400.v1.1
prunus_persica Prupe.1G045800_v2.0.a1
pyrus_communis pycom16g18780
rosa_chinensis RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1051
Acc36I ACCTGC 1 cut(s) 1051
AccB1I GGYRCC 1 cut(s) 1361
AccB7I CCANNNNNTGG 1 cut(s) 2363
AccBSI CCGCTC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 159
AccII CGCG 4 cut(s) 36, 193, 199, 266
AccIII TCCGGA 1 cut(s) 114
AclWI GGATC 7 cut(s) 66, 315, 406, 1026, 1706, 1910, 1923
AcsI RAATTY 1 cut(s) 541
AcvI CACGTG 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 1029
AfaI GTAC 5 cut(s) 969, 1652, 1857, 2040, 2296
AflIII ACRYGT 2 cut(s) 154, 970
AjnI CCWGG 2 cut(s) 1023, 2298
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AloI GAACNNNNNNTCC 2 cut(s) 1566, 1598
Alw21I GWGCWC 5 cut(s) 236, 1425, 1613, 1711, 2737
Alw26I GTCTC 1 cut(s) 1969
Alw44I GTGCAC 1 cut(s) 1609
AlwI GGATC 7 cut(s) 66, 315, 406, 1026, 1706, 1910, 1923
Ama87I CYCGRG 1 cut(s) 101
Aor13HI TCCGGA 1 cut(s) 114
AoxI GGCC 8 cut(s) 104, 123, 143, 281, 960, 1534, 1861, 2686
ApaI GGGCCC 1 cut(s) 108
ApaLI GTGCAC 1 cut(s) 1609
ApeKI GCWGC 2 cut(s) 1748, 2415
ApoI RAATTY 1 cut(s) 541
AspLEI GCGC 2 cut(s) 193, 199
AsuC2I CCSGG 4 cut(s) 102, 103, 333, 364
AsuHPI GGTGA 8 cut(s) 496, 856, 928, 1013, 1472, 1665, 2027, 2635
AsuII TTCGAA 1 cut(s) 2479
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 5 cut(s) 204, 323, 360, 782, 1952
BaeGI GKGCMC 2 cut(s) 108, 1613
BamHI GGATCC 1 cut(s) 1915
BanI GGYRCC 1 cut(s) 1361
BanII GRGCYC 4 cut(s) 108, 236, 1425, 1711
BauI CACGAG 3 cut(s) 1322, 2391, 2730
BbrPI CACGTG 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 878
Bbv12I GWGCWC 5 cut(s) 236, 1425, 1613, 1711, 2737
BbvI GCAGC 2 cut(s) 1735, 2402
BceAI ACGGC 1 cut(s) 2620
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BciT130I CCWGG 2 cut(s) 1025, 2300
BciVI GTATCC 1 cut(s) 1498
BclI TGATCA 2 cut(s) 1462, 1482
BcnI CCSGG 4 cut(s) 102, 103, 333, 364
BcoDI GTCTC 1 cut(s) 1969
BfaI CTAG 8 cut(s) 237, 561, 804, 1116, 1509, 1713, 2318, 2573
BfmI CTRYAG 3 cut(s) 1263, 1371, 1662
BfuAI ACCTGC 1 cut(s) 1051
BfuI GTATCC 1 cut(s) 1498
BisI GCNGC 9 cut(s) 22, 37, 48, 143, 168, 171, 264, 1749, 2416
BlsI GCNGC 9 cut(s) 23, 38, 49, 144, 169, 172, 265, 1750, 2417
BmcAI AGTACT 1 cut(s) 1857
Bme1390I CCNGG 6 cut(s) 102, 103, 333, 364, 1025, 2300
Bme18I GGWCC 5 cut(s) 204, 323, 360, 782, 1952
BmeT110I CYCGRG 1 cut(s) 101
BmiI GGNNCC 5 cut(s) 106, 324, 1363, 1864, 1917
BmrFI CCNGG 6 cut(s) 102, 103, 333, 364, 1025, 2300
BmsI GCATC 7 cut(s) 178, 626, 895, 917, 1175, 1760, 2602
BpiI GAAGAC 1 cut(s) 878
BpmI CTGGAG 1 cut(s) 61
Bpu10I CCTNAGC 1 cut(s) 1729
Bpu14I TTCGAA 1 cut(s) 2479
BpuEI CTTGAG 2 cut(s) 1284, 2053
BpuMI CCSGG 4 cut(s) 102, 103, 333, 364
BsaAI YACGTR 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 1029
BsaJI CCNNGG 7 cut(s) 34, 101, 963, 1281, 1635, 2298, 2410
BsaWI WCCGGW 2 cut(s) 114, 1457
BsaXI ACNNNNNCTCC 4 cut(s) 370, 400, 1566, 1596
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 5 cut(s) 516, 785, 1203, 1408, 1555
Bse3DI GCAATG 1 cut(s) 727
BseAI TCCGGA 1 cut(s) 114
BseBI CCWGG 2 cut(s) 1025, 2300
BseDI CCNNGG 7 cut(s) 34, 101, 963, 1281, 1635, 2298, 2410
BseMI GCAATG 1 cut(s) 727
BseMII CTCAG 3 cut(s) 1491, 1560, 1743
BseNI ACTGG 5 cut(s) 516, 785, 1203, 1408, 1555
BseRI GAGGAG 1 cut(s) 391
BseSI GKGCMC 2 cut(s) 108, 1613
BseXI GCAGC 2 cut(s) 1735, 2402
BseYI CCCAGC 1 cut(s) 2758
BsgI GTGCAG 2 cut(s) 390, 1737
Bsh1236I CGCG 4 cut(s) 36, 193, 199, 266
BshFI GGCC 8 cut(s) 106, 125, 145, 283, 962, 1536, 1863, 2688
BshNI GGYRCC 1 cut(s) 1361
BsiHKAI GWGCWC 5 cut(s) 236, 1425, 1613, 1711, 2737
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 6 cut(s) 102, 115, 183, 332, 363, 1458
BsmAI GTCTC 1 cut(s) 1969
BsnI GGCC 8 cut(s) 106, 125, 145, 283, 962, 1536, 1863, 2688
BsoBI CYCGRG 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 2479
Bsp120I GGGCCC 1 cut(s) 104
Bsp1286I GDGCHC 6 cut(s) 108, 236, 1425, 1613, 1711, 2737
Bsp13I TCCGGA 1 cut(s) 114
Bsp1407I TGTACA 1 cut(s) 1650
Bsp143I GATC 9 cut(s) 71, 307, 398, 1018, 1462, 1482, 1698, 1915, 2752
Bsp19I CCATGG 1 cut(s) 963
BspANI GGCC 8 cut(s) 106, 125, 145, 283, 962, 1536, 1863, 2688
BspCNI CTCAG 3 cut(s) 1492, 1561, 1742
BspEI TCCGGA 1 cut(s) 114
BspFNI CGCG 4 cut(s) 36, 193, 199, 266
BspHI TCATGA 2 cut(s) 814, 1594
BspLI GGNNCC 5 cut(s) 106, 324, 1363, 1864, 1917
BspMAI CTGCAG 2 cut(s) 1375, 1666
BspMI ACCTGC 1 cut(s) 1051
BspPI GGATC 7 cut(s) 66, 315, 406, 1026, 1706, 1910, 1923
BspQI GCTCTTC 1 cut(s) 2208
BspT104I TTCGAA 1 cut(s) 2479
BspT107I GGYRCC 1 cut(s) 1361
BsrBI CCGCTC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 727
BsrFI RCCGGY 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 1650
BsrI ACTGG 5 cut(s) 516, 785, 1203, 1408, 1555
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 7 cut(s) 34, 101, 963, 1281, 1635, 2298, 2410
BssMI GATC 9 cut(s) 71, 307, 398, 1018, 1462, 1482, 1698, 1915, 2752
BssNI GRCGYC 1 cut(s) 1029
BssSI CACGAG 3 cut(s) 1322, 2391, 2730
BssT1I CCWWGG 3 cut(s) 963, 1281, 2410
Bst2BI CACGAG 3 cut(s) 1322, 2391, 2730
Bst2UI CCWGG 2 cut(s) 1025, 2300
Bst4CI ACNGT 9 cut(s) 360, 1049, 1234, 1855, 2015, 2379, 2448, 2469, 2630
Bst6I CTCTTC 6 cut(s) 388, 759, 842, 1070, 2208, 2458
BstACI GRCGYC 1 cut(s) 1029
BstAUI TGTACA 1 cut(s) 1650
BstBAI YACGTR 1 cut(s) 155
BstBI TTCGAA 1 cut(s) 2479
BstC8I GCNNGC 3 cut(s) 19, 195, 825
BstDEI CTNAG 4 cut(s) 876, 1500, 1569, 1729
BstDSI CCRYGG 2 cut(s) 34, 963
BstENI CCTNNNNNAGG 1 cut(s) 1662
BstFNI CGCG 4 cut(s) 36, 193, 199, 266
BstHHI GCGC 2 cut(s) 193, 199
BstKTI GATC 9 cut(s) 74, 310, 401, 1021, 1465, 1485, 1701, 1918, 2755
BstMAI GTCTC 1 cut(s) 1969
BstMBI GATC 9 cut(s) 71, 307, 398, 1018, 1462, 1482, 1698, 1915, 2752
BstMWI GCNNNNNNNGC 7 cut(s) 14, 139, 1163, 1370, 1715, 1754, 2244
BstNI CCWGG 2 cut(s) 1025, 2300
BstNSI RCATGY 1 cut(s) 974
BstSCI CCNGG 6 cut(s) 100, 101, 331, 362, 1023, 2298
BstSFI CTRYAG 3 cut(s) 1263, 1371, 1662
BstSLI GKGCMC 2 cut(s) 108, 1613
BstUI CGCG 4 cut(s) 36, 193, 199, 266
BstV1I GCAGC 2 cut(s) 1735, 2402
BstV2I GAAGAC 1 cut(s) 878
BstX2I RGATCY 2 cut(s) 71, 1915
BstXI CCANNNNNNTGG 2 cut(s) 1526, 2766
BstYI RGATCY 2 cut(s) 71, 1915
BsuI GTATCC 1 cut(s) 1498
BsuRI GGCC 8 cut(s) 106, 125, 145, 283, 962, 1536, 1863, 2688
BtgI CCRYGG 2 cut(s) 34, 963
BtgZI GCGATG 1 cut(s) 201
BtsI GCAGTG 2 cut(s) 1368, 2087
BtsIMutI CAGTG 5 cut(s) 1239, 1368, 1401, 2087, 2217
BveI ACCTGC 1 cut(s) 1051
Cac8I GCNNGC 3 cut(s) 19, 195, 825
CciI TCATGA 2 cut(s) 814, 1594
CfoI GCGC 2 cut(s) 193, 199
Cfr10I RCCGGY 1 cut(s) 182
Cfr42I CCGCGG 1 cut(s) 37
Cfr9I CCCGGG 1 cut(s) 101
CpoI CGGWCCG 1 cut(s) 360
CseI GACGC 4 cut(s) 70, 255, 846, 1037
Csp6I GTAC 5 cut(s) 968, 1651, 1856, 2039, 2295
CspCI CAANNNNNGTGG 4 cut(s) 1916, 1951, 2635, 2670
CspI CGGWCCG 1 cut(s) 360
CviQI GTAC 5 cut(s) 968, 1651, 1856, 2039, 2295
DdeI CTNAG 4 cut(s) 876, 1500, 1569, 1729
DpnI GATC 9 cut(s) 73, 309, 400, 1020, 1464, 1484, 1700, 1917, 2754
DpnII GATC 9 cut(s) 71, 307, 398, 1018, 1462, 1482, 1698, 1915, 2752
Eam1104I CTCTTC 6 cut(s) 388, 759, 842, 1070, 2208, 2458
EarI CTCTTC 6 cut(s) 388, 759, 842, 1070, 2208, 2458
EciI GGCGGA 3 cut(s) 54, 320, 2253
Ecl136II GAGCTC 3 cut(s) 234, 1423, 1709
Eco130I CCWWGG 3 cut(s) 963, 1281, 2410
Eco24I GRGCYC 4 cut(s) 108, 236, 1425, 1711
Eco47I GGWCC 5 cut(s) 204, 323, 360, 782, 1952
Eco53kI GAGCTC 3 cut(s) 234, 1423, 1709
Eco72I CACGTG 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 101
EcoICRI GAGCTC 3 cut(s) 234, 1423, 1709
EcoNI CCTNNNNNAGG 1 cut(s) 1662
EcoRII CCWGG 2 cut(s) 1023, 2298
EcoT14I CCWWGG 3 cut(s) 963, 1281, 2410
EcoT22I ATGCAT 1 cut(s) 910
EcoT38I GRGCYC 4 cut(s) 108, 236, 1425, 1711
ErhI CCWWGG 3 cut(s) 963, 1281, 2410
FalI AAGNNNNNCTT 2 cut(s) 1882, 1914
FauI CCCGC 1 cut(s) 105
FbaI TGATCA 2 cut(s) 1462, 1482
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 9 cut(s) 22, 37, 48, 143, 168, 171, 264, 1749, 2416
FriOI GRGCYC 4 cut(s) 108, 236, 1425, 1711
Fsp4HI GCNGC 9 cut(s) 22, 37, 48, 143, 168, 171, 264, 1749, 2416
FspBI CTAG 8 cut(s) 237, 561, 804, 1116, 1509, 1713, 2318, 2573
GlaI GCGC 2 cut(s) 192, 198
GluI GCNGC 9 cut(s) 22, 37, 48, 143, 168, 171, 264, 1749, 2416
GsaI CCCAGC 1 cut(s) 2762
GsuI CTGGAG 1 cut(s) 61
HaeIII GGCC 8 cut(s) 106, 125, 145, 283, 962, 1536, 1863, 2688
HapII CCGG 6 cut(s) 102, 115, 183, 332, 363, 1458
HgaI GACGC 4 cut(s) 70, 255, 846, 1037
HhaI GCGC 2 cut(s) 193, 199
Hin1I GRCGYC 1 cut(s) 1029
Hin6I GCGC 2 cut(s) 191, 197
HinP1I GCGC 2 cut(s) 191, 197
HincII GTYRAC 2 cut(s) 160, 2055
HindII GTYRAC 2 cut(s) 160, 2055
HindIII AAGCTT 3 cut(s) 809, 821, 2360
HpaI GTTAAC 1 cut(s) 2055
HpaII CCGG 6 cut(s) 102, 115, 183, 332, 363, 1458
HphI GGTGA 8 cut(s) 496, 856, 928, 1013, 1472, 1665, 2027, 2635
Hpy166II GTNNAC 5 cut(s) 160, 1611, 1630, 2055, 2143
Hpy8I GTNNAC 5 cut(s) 160, 1611, 1630, 2055, 2143
Hpy99I CGWCG 2 cut(s) 86, 271
HpyCH4III ACNGT 9 cut(s) 360, 1049, 1234, 1855, 2015, 2379, 2448, 2469, 2630
HpyCH4IV ACGT 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 139, 1163, 1370, 1715, 1754, 2244
HpyF3I CTNAG 4 cut(s) 876, 1500, 1569, 1729
HpySE526I ACGT 1 cut(s) 154
Hsp92I GRCGYC 1 cut(s) 1029
HspAI GCGC 2 cut(s) 191, 197
Kpn2I TCCGGA 1 cut(s) 114
Ksp22I TGATCA 2 cut(s) 1462, 1482
KspAI GTTAAC 1 cut(s) 2055
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 9 cut(s) 71, 307, 398, 1018, 1462, 1482, 1698, 1915, 2752
LguI GCTCTTC 1 cut(s) 2208
LmnI GCTCC 2 cut(s) 231, 1714
Lsp1109I GCAGC 2 cut(s) 1735, 2402
LweI GCATC 7 cut(s) 178, 626, 895, 917, 1175, 1760, 2602
MaeI CTAG 8 cut(s) 237, 561, 804, 1116, 1509, 1713, 2318, 2573
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 5 cut(s) 1049, 1303, 1399, 2009, 2368
MalI GATC 9 cut(s) 73, 309, 400, 1020, 1464, 1484, 1700, 1917, 2754
MbiI CCGCTC 1 cut(s) 17
MboI GATC 9 cut(s) 71, 307, 398, 1018, 1462, 1482, 1698, 1915, 2752
MfeI CAATTG 2 cut(s) 434, 1257
MflI RGATCY 2 cut(s) 71, 1915
MhlI GDGCHC 6 cut(s) 108, 236, 1425, 1613, 1711, 2737
MluCI AATT 8 cut(s) 434, 477, 541, 592, 1257, 1336, 2124, 2475
MlyI GAGTC 8 cut(s) 51, 337, 707, 1113, 1463, 1586, 2216, 2720
MmeI TCCRAC 1 cut(s) 2168
Mph1103I ATGCAT 1 cut(s) 910
MroI TCCGGA 1 cut(s) 114
MseI TTAA 2 cut(s) 2054, 2618
MslI CAYNNNNRTG 1 cut(s) 1599
MspA1I CMGCKG 1 cut(s) 36
MspI CCGG 6 cut(s) 102, 115, 183, 332, 363, 1458
MspR9I CCNGG 6 cut(s) 102, 103, 333, 364, 1025, 2300
MunI CAATTG 2 cut(s) 434, 1257
MvaI CCWGG 2 cut(s) 1025, 2300
MvnI CGCG 4 cut(s) 36, 193, 199, 266
MwoI GCNNNNNNNGC 7 cut(s) 14, 139, 1163, 1370, 1715, 1754, 2244
NciI CCSGG 4 cut(s) 102, 103, 333, 364
NcoI CCATGG 1 cut(s) 963
NdeII GATC 9 cut(s) 71, 307, 398, 1018, 1462, 1482, 1698, 1915, 2752
NlaIV GGNNCC 5 cut(s) 106, 324, 1363, 1864, 1917
NmuCI GTSAC 3 cut(s) 1049, 1399, 2009
NsiI ATGCAT 1 cut(s) 910
NspI RCATGY 1 cut(s) 974
NspV TTCGAA 1 cut(s) 2479
PagI TCATGA 2 cut(s) 814, 1594
PaqCI CACCTGC 1 cut(s) 1051
PciI ACATGT 1 cut(s) 970
PciSI GCTCTTC 1 cut(s) 2208
PcsI WCGNNNNNNNCGW 1 cut(s) 1053
PfeI GAWTC 9 cut(s) 289, 673, 1096, 1211, 1772, 1995, 2303, 2399, 2516
PflMI CCANNNNNTGG 1 cut(s) 2363
PfoI TCCNGGA 1 cut(s) 362
PkrI GCNGC 9 cut(s) 23, 38, 49, 144, 169, 172, 265, 1750, 2417
PleI GAGTC 8 cut(s) 50, 336, 706, 1113, 1462, 1585, 2216, 2720
PmaCI CACGTG 1 cut(s) 155
PmlI CACGTG 1 cut(s) 155
PpsI GAGTC 8 cut(s) 50, 336, 706, 1113, 1462, 1585, 2216, 2720
Ppu21I YACGTR 1 cut(s) 155
PscI ACATGT 1 cut(s) 970
Psp124BI GAGCTC 3 cut(s) 236, 1425, 1711
Psp6I CCWGG 2 cut(s) 1023, 2298
PspCI CACGTG 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 2758
PspGI CCWGG 2 cut(s) 1023, 2298
PspN4I GGNNCC 5 cut(s) 106, 324, 1363, 1864, 1917
PspOMI GGGCCC 1 cut(s) 104
PstI CTGCAG 2 cut(s) 1375, 1666
PsuI RGATCY 2 cut(s) 71, 1915
RsaI GTAC 5 cut(s) 969, 1652, 1857, 2040, 2296
RsaNI GTAC 5 cut(s) 968, 1651, 1856, 2039, 2295
RseI CAYNNNNRTG 1 cut(s) 1599
Rsr2I CGGWCCG 1 cut(s) 360
RsrII CGGWCCG 1 cut(s) 360
SacI GAGCTC 3 cut(s) 236, 1425, 1711
SacII CCGCGG 1 cut(s) 37
SalI GTCGAC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 2208
SaqAI TTAA 2 cut(s) 2054, 2618
SatI GCNGC 9 cut(s) 22, 37, 48, 143, 168, 171, 264, 1749, 2416
Sau3AI GATC 9 cut(s) 71, 307, 398, 1018, 1462, 1482, 1698, 1915, 2752
SbfI CCTGCAGG 1 cut(s) 1666
ScaI AGTACT 1 cut(s) 1857
SchI GAGTC 8 cut(s) 51, 337, 707, 1113, 1463, 1586, 2216, 2720
ScrFI CCNGG 6 cut(s) 102, 103, 333, 364, 1025, 2300
SdaI CCTGCAGG 1 cut(s) 1666
SduI GDGCHC 6 cut(s) 108, 236, 1425, 1613, 1711, 2737
SfaNI GCATC 7 cut(s) 178, 626, 895, 917, 1175, 1760, 2602
SfcI CTRYAG 3 cut(s) 1263, 1371, 1662
Sfr303I CCGCGG 1 cut(s) 37
SfuI TTCGAA 1 cut(s) 2479
SgrAI CRCCGGYG 1 cut(s) 182
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 5 cut(s) 204, 323, 360, 782, 1952
SmaI CCCGGG 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 1599
SmlI CTYRAG 2 cut(s) 1299, 2068
SmoI CTYRAG 2 cut(s) 1299, 2068
SrfI GCCCGGGC 1 cut(s) 103
Sse8387I CCTGCAGG 1 cut(s) 1666
Sse9I AATT 8 cut(s) 434, 477, 541, 592, 1257, 1336, 2124, 2475
SspMI CTAG 8 cut(s) 237, 561, 804, 1116, 1509, 1713, 2318, 2573
SstI GAGCTC 3 cut(s) 236, 1425, 1711
StyD4I CCNGG 6 cut(s) 100, 101, 331, 362, 1023, 2298
StyI CCWWGG 3 cut(s) 963, 1281, 2410
TaaI ACNGT 9 cut(s) 360, 1049, 1234, 1855, 2015, 2379, 2448, 2469, 2630
TaiI ACGT 1 cut(s) 157
TaqI TCGA 6 cut(s) 159, 315, 701, 911, 1056, 2479
TasI AATT 8 cut(s) 434, 477, 541, 592, 1257, 1336, 2124, 2475
TatI WGTACW 2 cut(s) 1650, 1855
TauI GCSGC 7 cut(s) 24, 39, 50, 145, 170, 173, 266
TfiI GAWTC 9 cut(s) 289, 673, 1096, 1211, 1772, 1995, 2303, 2399, 2516
Tru1I TTAA 2 cut(s) 2054, 2618
Tru9I TTAA 2 cut(s) 2054, 2618
TscAI CASTG 5 cut(s) 1239, 1375, 1408, 2087, 2224
TseFI GTSAC 3 cut(s) 1049, 1399, 2009
TseI GCWGC 2 cut(s) 1748, 2415
Tsp45I GTSAC 3 cut(s) 1049, 1399, 2009
TspDTI ATGAA 6 cut(s) 803, 908, 1239, 1455, 2042, 2195
TspGWI ACGGA 1 cut(s) 2322
TspMI CCCGGG 1 cut(s) 101
TspRI CASTG 5 cut(s) 1239, 1375, 1408, 2087, 2224
Van91I CCANNNNNTGG 1 cut(s) 2363
VneI GTGCAC 1 cut(s) 1609
VpaK11BI GGWCC 5 cut(s) 204, 323, 360, 782, 1952
XagI CCTNNNNNAGG 1 cut(s) 1662
XapI RAATTY 1 cut(s) 541
XbaI TCTAGA 1 cut(s) 2317
XceI RCATGY 1 cut(s) 974
XcmI CCANNNNNNNNNTGG 2 cut(s) 214, 1829
XmaI CCCGGG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 8 cut(s) 237, 561, 804, 1116, 1509, 1713, 2318, 2573
ZrmI AGTACT 1 cut(s) 1857
Zsp2I ATGCAT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.