Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000555

Physical Location & Seq

Genomic Coordinates Forward (+)

15428745 .. 15431039

Gene Structure 2295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18481.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGCAAGAAAAGCGGTTGGTGGACGCCATTGTTATTCGCTGCCAGTATGACCCCTGCACGATATTTCTTTCATCATATTACAAGGCAAAACACACTTACACAGGCTCGGAGGAACATCTCTCGCCATTATGACCTGAGTAATGAACTGTTTTCGTTGTACTTGGACGAAACGATGACGTATTCCACGGCTGTTTTTAAGGAAGAAGATGAAGAATTGAAGATTGCACAGCTGAGGAAAATCAGCATTTTAATTGAAAAGGCTAAAATTAATAAGAACCATGAAGTCCTAGAGATTGGCTGTGGTTGGGGCAGCTTCGCTATTGAAGTCGTCAAACAAACTGGTTGTAGATACACTGGCATCACTTTGTCTGAGGAACAATTGAAATTTGCCGAAAAAAAAGTGAAAGATGCGGGCCTTCAGGACTACATCAAGTTCCTGTTGTGTGACTACCGCAAACTGCCTCCAAACTCCACTTATGACAGAGTCATTTCTTGTGAGATGCTAGAACACGTCGGCCACAAATTTATGGAGGAATTCTTTGGTTGCTGTGAATCTCTCCTAGCAGAAAAAGGACTTCTTGTTCTACAGTTCACATCATTACCGGATGAGCGTTATGATAAGTACAGGCAAAGCTCAGACTTCATAAATGAATATATATTTCCTGGTGCTTGTATACCTTCATTAAGTAGGGTAACATCAGCCATGGCTACTTCTTCAAAACTCAGTGTGGAACACTTGGAAAACATTGGAATTCATTATTATCCAACGCTAAAATGTTGGAAAAAAATTTTCTTGGAAAACCAGAACGAAATACTAGCTCTTGGATTCGATGAAGAGTTCATCCGGACATGGGAGTATTATTTTGATTATTGTGCGGCAGGATTCAACTCATGCACACTTGGAAATTACCAGATTGTGTTTTCTCGTCCTGGTAATGTTCCTGTATTAGGCAACCCCTTCAAAGGCTTCCCTTCAGCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0008825 GO:0009987 GO:0016740 GO:0016741 GO:0030258 GO:0032259 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase CMAS NAD_binding_8

Protein Analysis

329

Amino Acids

37.92

Weight (kDa)

6.27

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CMAS	PF02353	33 - 301	2.4e-76	Mycolic acid cyclopropane synthetase
Methyltransf_23	PF13489	88 - 203	1.7e-11	Methyltransferase domain
Methyltransf_31	PF13847	91 - 212	1.9e-11	Methyltransferase domain
Methyltransf_25	PF13649	96 - 192	8.2e-17	Methyltransferase domain
Methyltransf_11	PF08241	97 - 196	1.7e-14	Methyltransferase domain
Methyltransf_12	PF08242	97 - 194	4.6e-12	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca	FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica	MD16G1224400.v1.1
prunus_persica	Prupe.1G045800_v2.0.a1
pyrus_communis	pycom16g18780
rosa_chinensis	RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata	RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora	Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii	Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa	Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha	Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana	Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	676
AccIII	TCCGGA	1 cut(s)	846
AciI	CCGC	4 cut(s)	15, 413, 454, 878
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	5 cut(s)	386, 524, 536, 753, 789
AcuI	CTGAAG	2 cut(s)	404, 960
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	2 cut(s)	161, 626
AfiI	CCNNNNNNNGG	3 cut(s)	853, 950, 965
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	7 cut(s)	220, 257, 326, 385, 720, 889, 964
AjiI	CACGTC	1 cut(s)	514
AjnI	CCWGG	2 cut(s)	664, 931
AloI	GAACNNNNNNTCC	2 cut(s)	567, 599
AluBI	AGCT	4 cut(s)	232, 315, 636, 821
AluI	AGCT	4 cut(s)	232, 315, 636, 821
Aor13HI	TCCGGA	1 cut(s)	846
AoxI	GGCC	2 cut(s)	415, 517
ApeKI	GCWGC	2 cut(s)	41, 312
ApoI	RAATTY	5 cut(s)	386, 524, 536, 753, 789
AseI	ATTAAT	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	415
BbvCI	CCTCAGC	1 cut(s)	233
BbvI	GCAGC	2 cut(s)	28, 324
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	2 cut(s)	666, 933
BfaI	CTAG	4 cut(s)	290, 506, 563, 818
BfmI	CTRYAG	1 cut(s)	587
BisI	GCNGC	3 cut(s)	42, 313, 879
BlsI	GCNGC	3 cut(s)	43, 314, 880
Bme1390I	CCNGG	2 cut(s)	666, 933
BmgBI	CACGTC	1 cut(s)	514
BmgT120I	GGNCC	1 cut(s)	415
BmrFI	CCNGG	2 cut(s)	666, 933
BmsI	GCATC	3 cut(s)	369, 400, 492
Bpu10I	CCTNAGC	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	186, 705
BsaWI	WCCGGW	2 cut(s)	604, 846
Bsc4I	CCNNNNNNNGG	3 cut(s)	853, 950, 965
Bse1I	ACTGG	3 cut(s)	45, 346, 361
BseAI	TCCGGA	1 cut(s)	846
BseBI	CCWGG	2 cut(s)	666, 933
BseDI	CCNNGG	2 cut(s)	186, 705
BseGI	GGATG	2 cut(s)	613, 843
BseLI	CCNNNNNNNGG	3 cut(s)	853, 950, 965
BseMII	CTCAG	5 cut(s)	128, 224, 363, 651, 739
BseNI	ACTGG	3 cut(s)	45, 346, 361
BseXI	GCAGC	2 cut(s)	28, 324
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	417, 519
BsiSI	CCGG	2 cut(s)	605, 847
BslI	CCNNNNNNNGG	3 cut(s)	853, 950, 965
BsnI	GGCC	2 cut(s)	417, 519
Bsp13I	TCCGGA	1 cut(s)	846
Bsp19I	CCATGG	1 cut(s)	705
BspACI	CCGC	4 cut(s)	15, 413, 454, 878
BspANI	GGCC	2 cut(s)	417, 519
BspCNI	CTCAG	5 cut(s)	129, 225, 364, 650, 738
BspEI	TCCGGA	1 cut(s)	846
BsrI	ACTGG	3 cut(s)	45, 346, 361
BssECI	CCNNGG	2 cut(s)	186, 705
BssNAI	GTATAC	1 cut(s)	677
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	705
Bst1107I	GTATAC	1 cut(s)	677
Bst2UI	CCWGG	2 cut(s)	666, 933
Bst4CI	ACNGT	2 cut(s)	150, 591
Bst6I	CTCTTC	1 cut(s)	831
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	5 cut(s)	137, 233, 372, 637, 725
BstDSI	CCRYGG	2 cut(s)	186, 705
BstENI	CCTNNNNNAGG	1 cut(s)	948
BstF5I	GGATG	2 cut(s)	613, 843
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNI	CCWGG	2 cut(s)	666, 933
BstSCI	CCNGG	2 cut(s)	664, 931
BstSFI	CTRYAG	1 cut(s)	587
BstV1I	GCAGC	2 cut(s)	28, 324
BstZ17I	GTATAC	1 cut(s)	677
BsuRI	GGCC	2 cut(s)	417, 519
BtgI	CCRYGG	2 cut(s)	186, 705
BtrI	CACGTC	1 cut(s)	514
BtsCI	GGATG	2 cut(s)	613, 843
BtsIMutI	CAGTG	2 cut(s)	354, 733
Cac8I	GCNNGC	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	415
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	160, 625
CviAII	CATG	4 cut(s)	281, 706, 852, 894
CviQI	GTAC	2 cut(s)	160, 625
DdeI	CTNAG	5 cut(s)	137, 233, 372, 637, 725
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	831
EarI	CTCTTC	1 cut(s)	831
Eco130I	CCWWGG	1 cut(s)	705
Eco57I	CTGAAG	2 cut(s)	404, 960
EcoNI	CCTNNNNNAGG	1 cut(s)	948
EcoRI	GAATTC	2 cut(s)	536, 753
EcoRII	CCWGG	2 cut(s)	664, 931
EcoT14I	CCWWGG	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	4 cut(s)	284, 709, 855, 897
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FatI	CATG	4 cut(s)	280, 705, 851, 893
FauI	CCCGC	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	676
Fnu4HI	GCNGC	3 cut(s)	42, 313, 879
FokI	GGATG	2 cut(s)	620, 830
Fsp4HI	GCNGC	3 cut(s)	42, 313, 879
FspBI	CTAG	4 cut(s)	290, 506, 563, 818
GluI	GCNGC	3 cut(s)	42, 313, 879
HaeIII	GGCC	2 cut(s)	417, 519
HapII	CCGG	2 cut(s)	605, 847
HgaI	GACGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	284, 709, 855, 897
HinfI	GANTC	4 cut(s)	486, 554, 828, 885
HpaII	CCGG	2 cut(s)	605, 847
Hpy166II	GTNNAC	3 cut(s)	24, 594, 677
Hpy188I	TCNGA	3 cut(s)	111, 373, 640
Hpy188III	TCNNGA	2 cut(s)	422, 847
Hpy8I	GTNNAC	3 cut(s)	24, 594, 677
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	4 cut(s)	428, 690, 970, 984
HpyCH4III	ACNGT	2 cut(s)	150, 591
HpyCH4IV	ACGT	2 cut(s)	179, 513
HpyCH4V	TGCA	3 cut(s)	59, 227, 897
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	5 cut(s)	137, 233, 372, 637, 725
HpySE526I	ACGT	2 cut(s)	179, 513
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	284, 709, 855, 897
Kpn2I	TCCGGA	1 cut(s)	846
Lsp1109I	GCAGC	2 cut(s)	28, 324
LweI	GCATC	3 cut(s)	369, 400, 492
MaeI	CTAG	4 cut(s)	290, 506, 563, 818
MaeII	ACGT	2 cut(s)	179, 513
MaeIII	GTNAC	2 cut(s)	446, 694
MboII	GAAGA	6 cut(s)	215, 218, 224, 232, 708, 848
MfeI	CAATTG	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	495
MmeI	TCCRAC	2 cut(s)	761, 791
MnlI	CCTC	5 cut(s)	105, 228, 367, 474, 526
MroI	TCCGGA	1 cut(s)	846
MseI	TTAA	4 cut(s)	198, 251, 270, 686
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	2 cut(s)	605, 847
MspR9I	CCNGG	2 cut(s)	666, 933
MunI	CAATTG	1 cut(s)	380
MvaI	CCWGG	2 cut(s)	666, 933
MwoI	GCNNNNNNNGC	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	705
NlaIII	CATG	4 cut(s)	284, 709, 855, 897
NmuCI	GTSAC	1 cut(s)	446
PfeI	GAWTC	3 cut(s)	554, 828, 885
PflFI	GACNNNGTC	1 cut(s)	485
PkrI	GCNGC	3 cut(s)	43, 314, 880
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
PshBI	ATTAAT	1 cut(s)	270
Psp6I	CCWGG	2 cut(s)	664, 931
PspGI	CCWGG	2 cut(s)	664, 931
PspPI	GGNCC	1 cut(s)	415
PsyI	GACNNNGTC	1 cut(s)	485
PvuII	CAGCTG	1 cut(s)	232
RsaI	GTAC	2 cut(s)	161, 626
RsaNI	GTAC	2 cut(s)	160, 625
SaqAI	TTAA	4 cut(s)	198, 251, 270, 686
SatI	GCNGC	3 cut(s)	42, 313, 879
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	2 cut(s)	666, 933
SetI	ASST	8 cut(s)	138, 182, 234, 317, 516, 638, 682, 823
SfaNI	GCATC	3 cut(s)	369, 400, 492
SfcI	CTRYAG	1 cut(s)	587
SsiI	CCGC	4 cut(s)	15, 413, 454, 878
SspMI	CTAG	4 cut(s)	290, 506, 563, 818
StyD4I	CCNGG	2 cut(s)	664, 931
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	2 cut(s)	150, 591
TaiI	ACGT	2 cut(s)	182, 516
TaqI	TCGA	1 cut(s)	831
TatI	WGTACW	2 cut(s)	159, 624
TauI	GCSGC	1 cut(s)	881
TfiI	GAWTC	3 cut(s)	554, 828, 885
Tru1I	TTAA	4 cut(s)	198, 251, 270, 686
Tru9I	TTAA	4 cut(s)	198, 251, 270, 686
TscAI	CASTG	2 cut(s)	361, 733
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	41, 312
Tsp45I	GTSAC	1 cut(s)	446
TspRI	CASTG	2 cut(s)	361, 733
Tth111I	GACNNNGTC	1 cut(s)	485
VspI	ATTAAT	1 cut(s)	270
XagI	CCTNNNNNAGG	1 cut(s)	948
XapI	RAATTY	5 cut(s)	386, 524, 536, 753, 789
XmiI	GTMKAC	1 cut(s)	676
XspI	CTAG	4 cut(s)	290, 506, 563, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.