Rh6CG196400

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000555
Physical Location & Seq
Reverse (-)
32664749 .. 32675986
11238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG196400.1

Sequence Viewer

Length: 1188 bp
ATGGCTCTTTCAGACAACCCAAAACATATGGCTCTTTCATTGACGGAAACAGCGGCACGCCTATTTGTTACTAGATTTTTTAGACATTATATATCTTCTGGAAGTTTAATCTTATTAGAAGAGGGAGGCACAATGTTCACCTTTGAGGGAAGCAAAAAGGATTGTTCTCTAAAATCCGTTCTCAAAGTTCACAGTCCTCACTTCTACTGGAAAGTAATGACACAGGCTGATCTAGGCATTGCAGATGCATATATTAGTGGAGACTTTTCTTTTGATGATAAAGACCGAGGTCTTCTAAATCTTTTTATGCTTCTCATTGCCAACGGAGATTCTAATGCCTCAAAATCAAACAAGAAAAGGAGATGGTGGCAGCCTTTGTTTTTCACAGCTACTATAGCCTCAGCCAAATATGTCTTCCAGCATGCTTTAAGGAAAAATAGTCTTACACAGGCTCGAAGGAACATATCTCGTCATTATGATCTGGCTAGAATCGATGGGAACCATGAGGTTCTAGAAATTGGTTGTGGTTGGGGAGCCTTAGCTATTGAAGTAGTCAAAAAAACAGGTTGCAGATACACTGGCATCACTCTATCTGAAGAGCAATTGAAATTTGCTGAAAAAAAAGTGAAAGATGCTGGACTTCAGGACCGGATCAAGTTTCTTCTGTGTGACTATCGCCAATTGCCTTCTGACCACAAATATGACAGAATCATAATTTGCGAGGTGCTAGAACATGTCGGCCATGAATTTGTGGATGAGTTCTTTTCTTGCTGTGACTCTTTACTAGCAGAAAATGGGATTCTTGTTCTGCAGTTCATATCTATACTGGATGAACTCTATGATGAGTATAGGCGAAGTCCAGGCTTCATAAAGGAATATATATTTCCTGGTGGATGTCTACTTTCATTAAGTAGGGTAACATCAGCCATGGCTGCTTCTTCTAGACTTTGTGTGGAGCACTTGGAAAACATTGGACATCATCATTATTACCAAACACTAAGATGTTGGAGAAAGAATTTTTTAGAGAGACAGAGTGAAATACTCGCTCTTGGATTCAATGAAAATTTCATTCGGACATGGGAATATTATTTTGATTATTGTGCTGCTGGTTTCAAGTCATATACACTTAGAGATTGCCAGATTGTGTTTTCACGTCCTGGTAATCCTCTCACGTTCAACAATCCATAG

Protein Analysis

395

Amino Acids

45.45

Weight (kDa)

7.93

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 145 - 377 2.6e-53 Mycolic acid cyclopropane synthetase
Methyltransf_23 PF13489 162 - 273 6e-10 Methyltransferase domain
Methyltransf_31 PF13847 165 - 287 2.6e-13 Methyltransferase domain
MTS PF05175 167 - 270 1.2e-06 Methyltransferase small domain
Methyltransf_25 PF13649 170 - 266 8.3e-17 Methyltransferase domain
Methyltransf_11 PF08241 171 - 270 2.2e-14 Methyltransferase domain
Methyltransf_12 PF08242 171 - 268 3.8e-14 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica MD16G1224400.v1.1
prunus_persica Prupe.1G045800_v2.0.a1
pyrus_communis pycom16g18780
rosa_chinensis RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 898
AciI CCGC 1 cut(s) 53
AclWI GGATC 1 cut(s) 659
AcoI YGGCCR 1 cut(s) 739
AcsI RAATTY 4 cut(s) 608, 746, 1015, 1063
AcuI CTGAAG 2 cut(s) 615, 626
AflIII ACRYGT 1 cut(s) 733
AgsI TTSAA 5 cut(s) 548, 607, 1057, 1114, 1177
AjiI CACGTC 1 cut(s) 1154
AjnI CCWGG 3 cut(s) 859, 886, 1156
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 2 cut(s) 389, 542
AluI AGCT 2 cut(s) 389, 542
Alw21I GWGCWC 1 cut(s) 960
Alw26I GTCTC 2 cut(s) 255, 1021
AlwI GGATC 1 cut(s) 659
AoxI GGCC 1 cut(s) 739
ApeKI GCWGC 3 cut(s) 370, 932, 1103
ApoI RAATTY 4 cut(s) 608, 746, 1015, 1063
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AspS9I GGNCC 1 cut(s) 646
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 646
BbsI GAAGAC 2 cut(s) 284, 406
Bbv12I GWGCWC 1 cut(s) 960
BbvCI CCTCAGC 1 cut(s) 400
BbvI GCAGC 3 cut(s) 382, 919, 1090
BccI CCATC 2 cut(s) 357, 488
BciT130I CCWGG 3 cut(s) 861, 888, 1158
BcoDI GTCTC 2 cut(s) 255, 1021
BfaI CTAG 7 cut(s) 72, 233, 486, 512, 728, 785, 942
BfmI CTRYAG 2 cut(s) 393, 809
BisI GCNGC 4 cut(s) 54, 371, 933, 1104
BlsI GCNGC 4 cut(s) 55, 372, 934, 1105
Bme1390I CCNGG 3 cut(s) 861, 888, 1158
Bme18I GGWCC 1 cut(s) 646
BmgBI CACGTC 1 cut(s) 1154
BmgT120I GGNCC 1 cut(s) 646
BmiI GGNNCC 2 cut(s) 500, 535
BmrFI CCNGG 3 cut(s) 861, 888, 1158
BmsI GCATC 3 cut(s) 235, 591, 622
BoxI GACNNNNGTC 1 cut(s) 288
BpiI GAAGAC 2 cut(s) 284, 406
Bpu10I CCTNAGC 2 cut(s) 400, 538
Bsa29I ATCGAT 1 cut(s) 492
BsaJI CCNNGG 2 cut(s) 286, 927
BsaWI WCCGGW 1 cut(s) 648
Bse1I ACTGG 3 cut(s) 212, 583, 831
Bse3DI GCAATG 2 cut(s) 237, 315
BseBI CCWGG 3 cut(s) 861, 888, 1158
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 2 cut(s) 286, 927
BseGI GGATG 3 cut(s) 760, 835, 899
BseMI GCAATG 2 cut(s) 237, 315
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 3 cut(s) 212, 583, 831
BseXI GCAGC 3 cut(s) 382, 919, 1090
BshFI GGCC 1 cut(s) 741
BshVI ATCGAT 1 cut(s) 492
BsiHKAI GWGCWC 1 cut(s) 960
BsiSI CCGG 1 cut(s) 649
BsmAI GTCTC 2 cut(s) 255, 1021
BsnI GGCC 1 cut(s) 741
Bsp1286I GDGCHC 1 cut(s) 960
Bsp143I GATC 3 cut(s) 229, 478, 651
Bsp19I CCATGG 1 cut(s) 927
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 741
BspCNI CTCAG 1 cut(s) 413
BspDI ATCGAT 1 cut(s) 492
BspLI GGNNCC 2 cut(s) 500, 535
BspMAI CTGCAG 1 cut(s) 813
BspPI GGATC 1 cut(s) 659
BspQI GCTCTTC 1 cut(s) 591
BsrDI GCAATG 2 cut(s) 237, 315
BsrI ACTGG 3 cut(s) 212, 583, 831
BssECI CCNNGG 2 cut(s) 286, 927
BssMI GATC 3 cut(s) 229, 478, 651
BssT1I CCWWGG 1 cut(s) 927
Bst2UI CCWGG 3 cut(s) 861, 888, 1158
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 2 cut(s) 114, 591
BstC8I GCNNGC 2 cut(s) 58, 423
BstDEI CTNAG 4 cut(s) 400, 538, 998, 1127
BstDSI CCRYGG 1 cut(s) 927
BstF5I GGATG 3 cut(s) 760, 835, 899
BstKTI GATC 3 cut(s) 232, 481, 654
BstMAI GTCTC 2 cut(s) 255, 1021
BstMBI GATC 3 cut(s) 229, 478, 651
BstMWI GCNNNNNNNGC 2 cut(s) 395, 932
BstNI CCWGG 3 cut(s) 861, 888, 1158
BstNSI RCATGY 2 cut(s) 425, 737
BstPAI GACNNNNGTC 1 cut(s) 288
BstSCI CCNGG 3 cut(s) 859, 886, 1156
BstSFI CTRYAG 2 cut(s) 393, 809
BstV1I GCAGC 3 cut(s) 382, 919, 1090
BstV2I GAAGAC 2 cut(s) 284, 406
Bsu15I ATCGAT 1 cut(s) 492
BsuRI GGCC 1 cut(s) 741
BsuTUI ATCGAT 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 927
BtrI CACGTC 1 cut(s) 1154
BtsCI GGATG 3 cut(s) 760, 835, 899
BtsIMutI CAGTG 1 cut(s) 576
Cac8I GCNNGC 2 cut(s) 58, 423
Cfr13I GGNCC 1 cut(s) 646
ClaI ATCGAT 1 cut(s) 492
CviAII CATG 6 cut(s) 422, 503, 734, 743, 928, 1077
DdeI CTNAG 4 cut(s) 400, 538, 998, 1127
DpnI GATC 3 cut(s) 231, 480, 653
DpnII GATC 3 cut(s) 229, 478, 651
EaeI YGGCCR 1 cut(s) 739
Eam1104I CTCTTC 2 cut(s) 114, 591
EarI CTCTTC 2 cut(s) 114, 591
Eco130I CCWWGG 1 cut(s) 927
Eco47I GGWCC 1 cut(s) 646
Eco57I CTGAAG 2 cut(s) 615, 626
EcoRII CCWGG 3 cut(s) 859, 886, 1156
EcoT14I CCWWGG 1 cut(s) 927
EcoT22I ATGCAT 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 927
FaeI CATG 6 cut(s) 425, 506, 737, 746, 931, 1080
FatI CATG 6 cut(s) 421, 502, 733, 742, 927, 1076
FauNDI CATATG 1 cut(s) 27
FblI GTMKAC 1 cut(s) 898
Fnu4HI GCNGC 4 cut(s) 54, 371, 933, 1104
FokI GGATG 3 cut(s) 767, 842, 906
Fsp4HI GCNGC 4 cut(s) 54, 371, 933, 1104
FspBI CTAG 7 cut(s) 72, 233, 486, 512, 728, 785, 942
GluI GCNGC 4 cut(s) 54, 371, 933, 1104
HaeIII GGCC 1 cut(s) 741
HapII CCGG 1 cut(s) 649
Hin1II CATG 6 cut(s) 425, 506, 737, 746, 931, 1080
HinfI GANTC 6 cut(s) 329, 489, 708, 776, 799, 1053
HpaII CCGG 1 cut(s) 649
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 3 cut(s) 138, 190, 899
Hpy188I TCNGA 4 cut(s) 13, 595, 691, 1074
Hpy188III TCNNGA 4 cut(s) 99, 512, 644, 942
Hpy8I GTNNAC 3 cut(s) 138, 190, 899
HpyAV CCTTC 2 cut(s) 450, 696
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 2 cut(s) 1153, 1172
HpyCH4V TGCA 4 cut(s) 242, 248, 570, 811
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 932
HpyF3I CTNAG 4 cut(s) 400, 538, 998, 1127
HpySE526I ACGT 2 cut(s) 1153, 1172
Hsp92II CATG 6 cut(s) 425, 506, 737, 746, 931, 1080
Kzo9I GATC 3 cut(s) 229, 478, 651
LguI GCTCTTC 1 cut(s) 591
LmnI GCTCC 2 cut(s) 533, 955
Lsp1109I GCAGC 3 cut(s) 382, 919, 1090
LweI GCATC 3 cut(s) 235, 591, 622
MaeI CTAG 7 cut(s) 72, 233, 486, 512, 728, 785, 942
MaeII ACGT 2 cut(s) 1153, 1172
MaeIII GTNAC 4 cut(s) 67, 668, 773, 916
MalI GATC 3 cut(s) 231, 480, 653
MboI GATC 3 cut(s) 229, 478, 651
MboII GAAGA 7 cut(s) 87, 131, 284, 406, 608, 653, 930
MfeI CAATTG 2 cut(s) 602, 680
MhlI GDGCHC 1 cut(s) 960
MluCI AATT 8 cut(s) 516, 602, 608, 680, 714, 746, 1015, 1063
MlyI GAGTC 1 cut(s) 770
MmeI TCCRAC 1 cut(s) 986
Mph1103I ATGCAT 1 cut(s) 250
MseI TTAA 3 cut(s) 107, 428, 908
MslI CAYNNNNRTG 2 cut(s) 699, 1000
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 1 cut(s) 649
MspR9I CCNGG 3 cut(s) 861, 888, 1158
MunI CAATTG 2 cut(s) 602, 680
MvaI CCWGG 3 cut(s) 861, 888, 1158
MwoI GCNNNNNNNGC 2 cut(s) 395, 932
NcoI CCATGG 1 cut(s) 927
NdeI CATATG 1 cut(s) 27
NdeII GATC 3 cut(s) 229, 478, 651
NlaIII CATG 6 cut(s) 425, 506, 737, 746, 931, 1080
NlaIV GGNNCC 2 cut(s) 500, 535
NmuCI GTSAC 2 cut(s) 668, 773
NsiI ATGCAT 1 cut(s) 250
NspI RCATGY 2 cut(s) 425, 737
PaeI GCATGC 1 cut(s) 425
PciI ACATGT 1 cut(s) 733
PciSI GCTCTTC 1 cut(s) 591
PfeI GAWTC 5 cut(s) 329, 489, 708, 799, 1053
PkrI GCNGC 4 cut(s) 55, 372, 934, 1105
PleI GAGTC 1 cut(s) 770
PpsI GAGTC 1 cut(s) 770
PscI ACATGT 1 cut(s) 733
PshAI GACNNNNGTC 1 cut(s) 288
Psp6I CCWGG 3 cut(s) 859, 886, 1156
PspGI CCWGG 3 cut(s) 859, 886, 1156
PspN4I GGNNCC 2 cut(s) 500, 535
PspPI GGNCC 1 cut(s) 646
PstI CTGCAG 1 cut(s) 813
RseI CAYNNNNRTG 2 cut(s) 699, 1000
SapI GCTCTTC 1 cut(s) 591
SaqAI TTAA 3 cut(s) 107, 428, 908
SatI GCNGC 4 cut(s) 54, 371, 933, 1104
Sau3AI GATC 3 cut(s) 229, 478, 651
Sau96I GGNCC 1 cut(s) 646
SchI GAGTC 1 cut(s) 770
ScrFI CCNGG 3 cut(s) 861, 888, 1158
SduI GDGCHC 1 cut(s) 960
SetI ASST 9 cut(s) 143, 292, 391, 510, 544, 568, 726, 1156, 1175
SfaNI GCATC 3 cut(s) 235, 591, 622
SfcI CTRYAG 2 cut(s) 393, 809
SinI GGWCC 1 cut(s) 646
SmiMI CAYNNNNRTG 2 cut(s) 699, 1000
SphI GCATGC 1 cut(s) 425
Sse9I AATT 8 cut(s) 516, 602, 608, 680, 714, 746, 1015, 1063
SsiI CCGC 1 cut(s) 53
SspI AATATT 1 cut(s) 1085
SspMI CTAG 7 cut(s) 72, 233, 486, 512, 728, 785, 942
StyD4I CCNGG 3 cut(s) 859, 886, 1156
StyI CCWWGG 1 cut(s) 927
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 2 cut(s) 1156, 1175
TaqI TCGA 2 cut(s) 454, 492
TaqII GACCGA 1 cut(s) 300
TasI AATT 8 cut(s) 516, 602, 608, 680, 714, 746, 1015, 1063
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 5 cut(s) 329, 489, 708, 799, 1053
Tru1I TTAA 3 cut(s) 107, 428, 908
Tru9I TTAA 3 cut(s) 107, 428, 908
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 2 cut(s) 668, 773
TseI GCWGC 3 cut(s) 370, 932, 1103
Tsp45I GTSAC 2 cut(s) 668, 773
TspDTI ATGAA 8 cut(s) 27, 759, 805, 846, 856, 894, 1057, 1074
TspGWI ACGGA 3 cut(s) 59, 166, 339
TspRI CASTG 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 646
XapI RAATTY 4 cut(s) 608, 746, 1015, 1063
XbaI TCTAGA 2 cut(s) 511, 941
XceI RCATGY 2 cut(s) 425, 737
XmiI GTMKAC 1 cut(s) 898
XspI CTAG 7 cut(s) 72, 233, 486, 512, 728, 785, 942
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.