Rh5BG441600

Mycolic acid cyclopropane synthetase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000555
Physical Location & Seq
Reverse (-)
70974911 .. 70986292
11382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG441600.1

Sequence Viewer

Length: 222 bp
ATGGAATATAGAGGCATGTGCCAACGGGCGGCTTGGGCAGGGCAATACTTATTAGAAGAGGGAGGCACAATGTTCACCTTTGAGGGAAGCAGAAAGGACTGTTCTCTAAAATCCATTCTTAAAGTTCACAGTCCTCAGTTTTACTGGAAATTCCCATCTTTGGAGAATGTCACAAGACATACCGGAAGACCATGGAAAATAATGTTTGAGAATGATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase CMAS NAD_binding_8

Protein Analysis

73

Amino Acids

8.58

Weight (kDa)

8.69

Isoelectric Point (pI)

27.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica MD16G1224400.v1.1
prunus_persica Prupe.1G045800_v2.0.a1
pyrus_communis pycom16g18780
rosa_chinensis RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AcsI RAATTY 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 28, 160
ApoI RAATTY 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 193
BccI CCATC 2 cut(s) 163, 209
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 160
Bse1I ACTGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 191
BseLI CCNNNNNNNGG 2 cut(s) 28, 160
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 28, 160
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 148
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 191
BssT1I CCWWGG 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 101, 131
Bst6I CTCTTC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 19
BstV2I GAAGAC 1 cut(s) 193
BtgI CCRYGG 1 cut(s) 191
CviAII CATG 2 cut(s) 16, 192
CviJI RGCY 1 cut(s) 32
CviKI_1 RGCY 1 cut(s) 32
DdeI CTNAG 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 2 cut(s) 19, 195
FaiI YATR 4 cut(s) 9, 17, 180, 193
FatI CATG 2 cut(s) 15, 191
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HapII CCGG 1 cut(s) 183
Hin1II CATG 2 cut(s) 19, 195
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 75, 127
Hpy8I GTNNAC 2 cut(s) 75, 127
HpyCH4III ACNGT 2 cut(s) 101, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 2 cut(s) 19, 195
LpnPI CCDG 3 cut(s) 24, 130, 196
MaeIII GTNAC 1 cut(s) 169
MboII GAAGA 2 cut(s) 68, 198
MluCI AATT 1 cut(s) 149
MnlI CCTC 5 cut(s) 5, 52, 56, 76, 144
MseI TTAA 1 cut(s) 120
MspI CCGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 35
NcoI CCATGG 1 cut(s) 191
NlaIII CATG 2 cut(s) 19, 195
NmuCI GTSAC 1 cut(s) 169
NspI RCATGY 1 cut(s) 19
PkrI GCNGC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 30
SetI ASST 1 cut(s) 80
SgeI CNNG 8 cut(s) 28, 38, 45, 51, 157, 186, 195, 204
Sse9I AATT 1 cut(s) 149
SsiI CCGC 1 cut(s) 29
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 101, 131
TasI AATT 1 cut(s) 149
TauI GCSGC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
XapI RAATTY 1 cut(s) 149
XceI RCATGY 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.