RchiOBHm_Chr4g0394941

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000555
Physical Location & Seq
Reverse (-)
10741061 .. 10749965
8905 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36741

Sequence Viewer

Length: 2595 bp
ATGAAAGTTGCAGTGATTGGTTCTGGTATTAGTGGTTTGGTCTCAGCCTATGTTCTTGCAAAAGAAGGTGTTGAGGTGGTTCTATATGAGAAAAAAGACTACCTGGGTGGCCATGCCAGGACTGTCACATATGATGGTGTTGATTTGGACCTTGGTTTCATGGTCTTTAATCATGTACTGTATCCAAATATGATGGAGTTTTTTGAGAGCCTTGGAGTTGATATGGAGACATGTGACATGTCCTTCTCAGTGAGTTTAGATAAAGGACGGGGATGTGAATGGGGTAGTCGAAATAGTCTCTCAAGCTTGTTTGCAGAAAAGAAGAACTTGTTCAATCCATACTTCTGGAAAATGCTTCGAGAAATCACCAAGTTTAAACATGACTTGATCAGATATTTTGAGGTGCTTGAGGGTAACCCAGACATTGACCGGAATGAAACCTTGGGGCAGTTTATTGAATCACATGACTACTCTGAACTATTTCTGAAGGCTTACCTTATTCCAATATGTAGTTCAATCTTGTCGTGTCCTTCAGAAGGGGTTATGAGCTTCTCAGCTTTCTCTGTGCTTTCAGTATGTCGCAATCATCATCTGCTTCAGCTATCTGGAGGCCCACAGTGGCTTACCGTCAAATGGGGTTCACATTGTTATGTCAAGAAGGTGAAAGAAGTGTTGGAGAGTAAAGGGTGTCAGATAAGAACCGGCTTTGAGGTGCATAAAGTTTCCACAACTGATGAGGGTTGCACTGTTTTTACTGGAGATGGTATTGAGGAAATTTACAATAAATGCATAATAGCTATCCATGCCCCTGATGCCGTGAGAATATTAGGAGAACAGGCAACATCTGATGAACTGAGAATACTTGGCGCCTTCCAATATGTGTACTGTGATATTTTCCTTCATCGTGACAAAACTTTAATGCCCCAAAATCTAGCAGCATGGAGTGCATTGAACTATCTTGGAAGTACTGACAACAAAGTATGTTTGACATACTGGCTCAATCAGCTTCAGGGGAACCTCAGTGAAACAAGTCAACCATATCTTGTGACACTCAATCCAGATCATACACCAAACCACACCTTGCTTAAGTGGTCAACAAGCCATCCAGTCCTATCTGTTGCGGCATCAAAAGCTTCGCTGGAGTTTCCTCATATTCAAGGAACGAGAGGAATTTGGTTTTGTGGAGCATACCAGGGTTACGGCTTCCATGAGGATGGGCTAAAGGCTGGAATGGCTGCAGCACATGGTATGCTTGGAAAAGGTTGTGCCCTGTTGAGAAACCCAAAACATATGGCTCTTTCAATGACGGAAACAGCGGCACGCCTGTTTGTTATTAGATTTCTTAGACATTATATATCTACCGGATGTTTAATTTTATTAGAAGAAGGAGGCTCGATGTTCACCTTTGAGGGAAGCAGAAAGGACTGTTCTCTAAAATCCGTTCTTAAAGTTCACAGTCCTCAGTTTTACTGGAAAGTAATGACACAGGCTGATCTAGGCATTGCAGATGCATATATCAGTCGCGATTTTTCTTTTGATGATAAAGACCGAGGTTTACTAAATCTTTTTATGCTTCTCATTGCCAACGGAGATTCTAATGCCTCAAAATCAAACAAGAAAAGGGGATGGTGGCAGCCTTTGTTTTTCACAGCCACTATAGCCTCAGCCAAATATTTCTTTCAGCATGCTTTAAGGAAAAATAATCTTACACAGGCTCGAAGGAATATATCTCATCATTATGATTTGAGTAGTGAATTATTTTCTCTGTTCTTGGGTGAAACAATGATGTACTCCGCTGCAACGTTTAAGACAGAAGATGAGGATTTGAATACTGCACAACTTAGGAAAATCTCTATTCTCATTGATAAGGCTAGAATTGATGAGAACCATGAGGTTCTAGATATTGGTTTTGGTTGGGGAACCTTTGCTATTGAAGCAGTCAAACAAACGGGCTGCAGATACACTGGCATCACTCTATCTGAGGAACAACTTAAATTTGCTGAAAAGAAAGTGAGAGATGCTGGACTTCAGCACCAGATCAAGTTCCTTCTGTGTGACTACCGCCAGTTGCCTTCTGACCACAAATATGACAGAATCATTTGTTGCGAGATGATAGAACATGTCGGCCATGAATTTGTGGATGAGTTCTTTTCTTGTTGTGAGTCTGTACTGGCAAAAAATGGGCTTTTTATTCTCCAGTTCATATCCATACCGGATGAACGCTACAATAACTACAGGCGAAGTTCAGACTTCATAAAGGAGTATATGTTTCCTGGTGCATGTGTACTTTCATTAAGTAGGGTAATATCAGCTATGGCCGCTTCTTCCAGACTCTGTGTGGAGCACATGGAAAACATTGGAATTCATTATTACCAAACACTAGGATGTTGGAGAAAGAATTTCTTAGAGAGACAGAGTGAAATACTCGCTCTTGGATTCGATGACAATTTCATTCGGACATGGGAATATTATTTTGATTATTCCGCTGCTGGTTTCAAGTCACTTACACTTGGAGATTATCAGATTGTTTTTTCACGTCCTCGTAATGGTCTCACATTCAACAATCCATATAAGGGTTTCCCTTCAGCATATTAA

Protein Analysis

864

Amino Acids

98.13

Weight (kDa)

6.37

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 2 - 39 3.9e-07 FAD dependent oxidoreductase
NAD_binding_8 PF13450 5 - 71 3.8e-17 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 10 - 273 3e-18 Flavin containing amine oxidoreductase
CMAS PF02353 569 - 836 4.7e-72 Mycolic acid cyclopropane synthetase
Methyltransf_23 PF13489 624 - 735 1.5e-08 Methyltransferase domain
Methyltransf_31 PF13847 627 - 739 1.6e-11 Methyltransferase domain
Methyltransf_25 PF13649 632 - 728 2.1e-16 Methyltransferase domain
Methyltransf_11 PF08241 633 - 732 6.1e-14 Methyltransferase domain
Methyltransf_12 PF08242 633 - 730 2.6e-10 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica MD16G1224400.v1.1
prunus_persica Prupe.1G045800_v2.0.a1
pyrus_communis pycom16g18780
rosa_chinensis RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 866
AccII CGCG 1 cut(s) 1524
AciI CCGC 6 cut(s) 1121, 1316, 1794, 2062, 2319, 2484
AclI AACGTT 1 cut(s) 1802
AcoI YGGCCR 3 cut(s) 109, 2125, 2316
AcsI RAATTY 6 cut(s) 774, 1170, 1994, 2132, 2361, 2398
AcuI CTGAAG 6 cut(s) 506, 516, 581, 992, 2012, 2568
AcyI GRCGYC 1 cut(s) 867
AfaI GTAC 6 cut(s) 177, 884, 967, 1790, 2169, 2286
AfiI CCNNNNNNNGG 4 cut(s) 536, 633, 2546, 2573
AflII CTTAAG 1 cut(s) 1085
AflIII ACRYGT 3 cut(s) 230, 237, 2119
AjiI CACGTC 1 cut(s) 2537
AjnI CCWGG 4 cut(s) 102, 116, 1191, 2272
AjuI GAANNNNNNNTTGG 6 cut(s) 425, 457, 496, 528, 656, 688
AluBI AGCT 8 cut(s) 306, 549, 557, 601, 797, 1006, 1133, 2312
AluI AGCT 8 cut(s) 306, 549, 557, 601, 797, 1006, 1133, 2312
Alw21I GWGCWC 1 cut(s) 2346
Alw26I GTCTC 5 cut(s) 46, 221, 302, 2404, 2555
AlwNI CAGNNNCTG 1 cut(s) 2334
AoxI GGCC 4 cut(s) 109, 610, 2125, 2316
ApeKI GCWGC 7 cut(s) 935, 1235, 1238, 1633, 1796, 1953, 2486
ApoI RAATTY 6 cut(s) 774, 1170, 1994, 2132, 2361, 2398
Asp700I GAANNNNTTC 2 cut(s) 329, 480
AspLEI GCGC 1 cut(s) 869
AspS9I GGNCC 2 cut(s) 148, 611
AsuHPI GGTGA 4 cut(s) 358, 673, 1393, 1787
AvaII GGWCC 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 1270
BalI TGGCCA 1 cut(s) 111
BanI GGYRCC 1 cut(s) 866
Bbv12I GWGCWC 1 cut(s) 2346
BbvCI CCTCAGC 1 cut(s) 1663
BbvI GCAGC 7 cut(s) 947, 1222, 1250, 1645, 1783, 1940, 2473
BccI CCATC 6 cut(s) 128, 187, 755, 1110, 1208, 1620
BceAI ACGGC 2 cut(s) 800, 1216
BciT130I CCWGG 4 cut(s) 104, 118, 1193, 2274
BciVI GTATCC 1 cut(s) 192
BclI TGATCA 1 cut(s) 387
BcoDI GTCTC 5 cut(s) 46, 221, 302, 2404, 2555
BfaI CTAG 5 cut(s) 932, 1496, 1872, 1898, 2381
BfmI CTRYAG 4 cut(s) 1236, 1656, 1954, 2233
BfoI RGCGCY 1 cut(s) 870
BfrI CTTAAG 1 cut(s) 1085
BfuI GTATCC 1 cut(s) 192
BmcAI AGTACT 1 cut(s) 967
Bme1390I CCNGG 4 cut(s) 104, 118, 1193, 2274
Bme18I GGWCC 1 cut(s) 148
BmgBI CACGTC 1 cut(s) 2537
BmgT120I GGNCC 2 cut(s) 148, 611
BmiI GGNNCC 3 cut(s) 868, 1016, 1921
BmrFI CCNGG 4 cut(s) 104, 118, 1193, 2274
BmsI GCATC 5 cut(s) 802, 1133, 1498, 1977, 2008
BpmI CTGGAG 4 cut(s) 627, 777, 1160, 2180
Bpu10I CCTNAGC 1 cut(s) 1663
BpuEI CTTGAG 2 cut(s) 286, 428
BsaHI GRCGYC 1 cut(s) 867
BsaI GGTCTC 2 cut(s) 46, 2555
BsaJI CCNNGG 6 cut(s) 103, 151, 211, 441, 1192, 1549
BsaWI WCCGGW 3 cut(s) 429, 1361, 2212
BsaXI ACNNNNNCTCC 2 cut(s) 2252, 2282
Bsc4I CCNNNNNNNGG 4 cut(s) 536, 633, 2546, 2573
Bse118I RCCGGY 1 cut(s) 701
Bse1I ACTGG 8 cut(s) 760, 998, 1106, 1475, 1969, 2065, 2175, 2197
Bse3DI GCAATG 2 cut(s) 1500, 1578
BseBI CCWGG 4 cut(s) 104, 118, 1193, 2274
BseDI CCNNGG 6 cut(s) 103, 151, 211, 441, 1192, 1549
BseGI GGATG 8 cut(s) 278, 1102, 1219, 1370, 1631, 2146, 2221, 2390
BseLI CCNNNNNNNGG 4 cut(s) 536, 633, 2546, 2573
BseMI GCAATG 2 cut(s) 1500, 1578
BseMII CTCAG 8 cut(s) 57, 261, 567, 845, 1033, 1475, 1677, 1971
BseNI ACTGG 8 cut(s) 760, 998, 1106, 1475, 1969, 2065, 2175, 2197
BseSI GKGCMC 1 cut(s) 1270
BseXI GCAGC 7 cut(s) 947, 1222, 1250, 1645, 1783, 1940, 2473
BsgI GTGCAG 1 cut(s) 1818
Bsh1236I CGCG 1 cut(s) 1524
BshFI GGCC 4 cut(s) 111, 612, 2127, 2318
BshNI GGYRCC 1 cut(s) 866
BsiHKAI GWGCWC 1 cut(s) 2346
BsiSI CCGG 4 cut(s) 430, 702, 1362, 2213
BslI CCNNNNNNNGG 4 cut(s) 536, 633, 2546, 2573
BsmAI GTCTC 5 cut(s) 46, 221, 302, 2404, 2555
BsnI GGCC 4 cut(s) 111, 612, 2127, 2318
Bso31I GGTCTC 2 cut(s) 46, 2555
Bsp1286I GDGCHC 2 cut(s) 1270, 2346
Bsp143I GATC 4 cut(s) 387, 1060, 1492, 2037
Bsp68I TCGCGA 1 cut(s) 1524
BspACI CCGC 6 cut(s) 1121, 1316, 1794, 2062, 2319, 2484
BspANI GGCC 4 cut(s) 111, 612, 2127, 2318
BspCNI CTCAG 8 cut(s) 56, 260, 566, 846, 1032, 1474, 1676, 1972
BspFNI CGCG 1 cut(s) 1524
BspLI GGNNCC 3 cut(s) 868, 1016, 1921
BspMAI CTGCAG 2 cut(s) 1240, 1958
BspT107I GGYRCC 1 cut(s) 866
BspTI CTTAAG 1 cut(s) 1085
BspTNI GGTCTC 2 cut(s) 46, 2555
BsrDI GCAATG 2 cut(s) 1500, 1578
BsrFI RCCGGY 1 cut(s) 701
BsrI ACTGG 8 cut(s) 760, 998, 1106, 1475, 1969, 2065, 2175, 2197
BssAI RCCGGY 1 cut(s) 701
BssECI CCNNGG 6 cut(s) 103, 151, 211, 441, 1192, 1549
BssMI GATC 4 cut(s) 387, 1060, 1492, 2037
BssNI GRCGYC 1 cut(s) 867
BssT1I CCWWGG 3 cut(s) 151, 211, 441
Bst2UI CCWGG 4 cut(s) 104, 118, 1193, 2274
Bst4CI ACNGT 8 cut(s) 124, 180, 618, 628, 748, 887, 1427, 1457
BstACI GRCGYC 1 cut(s) 867
BstAFI CTTAAG 1 cut(s) 1085
BstAPI GCANNNNNTGC 1 cut(s) 944
BstC8I GCNNGC 2 cut(s) 1321, 1686
BstEII GGTNACC 1 cut(s) 413
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 8 cut(s) 278, 1102, 1219, 1370, 1631, 2146, 2221, 2390
BstFNI CGCG 1 cut(s) 1524
BstH2I RGCGCY 1 cut(s) 870
BstHHI GCGC 1 cut(s) 869
BstKTI GATC 4 cut(s) 390, 1063, 1495, 2040
BstMAI GTCTC 5 cut(s) 46, 221, 302, 2404, 2555
BstMBI GATC 4 cut(s) 387, 1060, 1492, 2037
BstMWI GCNNNNNNNGC 9 cut(s) 803, 812, 944, 1003, 1130, 1232, 1658, 1934, 2318
BstNI CCWGG 4 cut(s) 104, 118, 1193, 2274
BstNSI RCATGY 5 cut(s) 234, 241, 1688, 2123, 2283
BstPI GGTNACC 1 cut(s) 413
BstSCI CCNGG 4 cut(s) 102, 116, 1191, 2272
BstSFI CTRYAG 4 cut(s) 1236, 1656, 1954, 2233
BstSLI GKGCMC 1 cut(s) 1270
BstUI CGCG 1 cut(s) 1524
BstV1I GCAGC 7 cut(s) 947, 1222, 1250, 1645, 1783, 1940, 2473
BstXI CCANNNNNNTGG 2 cut(s) 345, 1214
BsuI GTATCC 1 cut(s) 192
BsuRI GGCC 4 cut(s) 111, 612, 2127, 2318
BtrI CACGTC 1 cut(s) 2537
BtsCI GGATG 8 cut(s) 278, 1102, 1219, 1370, 1631, 2146, 2221, 2390
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 6 cut(s) 18, 255, 623, 744, 1027, 1962
BtuMI TCGCGA 1 cut(s) 1524
Cac8I GCNNGC 2 cut(s) 1321, 1686
CaiI CAGNNNCTG 1 cut(s) 2334
CfoI GCGC 1 cut(s) 869
Cfr10I RCCGGY 1 cut(s) 701
Cfr13I GGNCC 2 cut(s) 148, 611
Csp6I GTAC 6 cut(s) 176, 883, 966, 1789, 2168, 2285
CviQI GTAC 6 cut(s) 176, 883, 966, 1789, 2168, 2285
DinI GGCGCC 1 cut(s) 868
DpnI GATC 4 cut(s) 389, 1062, 1494, 2039
DpnII GATC 4 cut(s) 387, 1060, 1492, 2037
DraI TTTAAA 1 cut(s) 376
EaeI YGGCCR 3 cut(s) 109, 2125, 2316
Eco130I CCWWGG 3 cut(s) 151, 211, 441
Eco31I GGTCTC 2 cut(s) 46, 2555
Eco47I GGWCC 1 cut(s) 148
Eco57I CTGAAG 6 cut(s) 506, 516, 581, 992, 2012, 2568
Eco91I GGTNACC 1 cut(s) 413
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoO65I GGTNACC 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 2361
EcoRII CCWGG 4 cut(s) 102, 116, 1191, 2272
EcoT14I CCWWGG 3 cut(s) 151, 211, 441
EcoT22I ATGCAT 2 cut(s) 791, 1513
EgeI GGCGCC 1 cut(s) 868
EheI GGCGCC 1 cut(s) 868
ErhI CCWWGG 3 cut(s) 151, 211, 441
FalI AAGNNNNNCTT 4 cut(s) 311, 343, 2387, 2419
FauNDI CATATG 2 cut(s) 130, 1290
FbaI TGATCA 1 cut(s) 387
FokI GGATG 8 cut(s) 285, 1089, 1226, 1377, 1638, 2153, 2228, 2397
FspBI CTAG 5 cut(s) 932, 1496, 1872, 1898, 2381
GlaI GCGC 1 cut(s) 868
GsuI CTGGAG 4 cut(s) 627, 777, 1160, 2180
HaeII RGCGCY 1 cut(s) 870
HaeIII GGCC 4 cut(s) 111, 612, 2127, 2318
HapII CCGG 4 cut(s) 430, 702, 1362, 2213
HhaI GCGC 1 cut(s) 869
Hin1I GRCGYC 1 cut(s) 867
Hin6I GCGC 1 cut(s) 867
HinP1I GCGC 1 cut(s) 867
HincII GTYRAC 2 cut(s) 1034, 1095
HindII GTYRAC 2 cut(s) 1034, 1095
HindIII AAGCTT 2 cut(s) 304, 1131
HinfI GANTC 6 cut(s) 458, 1592, 2094, 2162, 2331, 2436
HpaII CCGG 4 cut(s) 430, 702, 1362, 2213
HphI GGTGA 4 cut(s) 358, 673, 1393, 1787
Hpy166II GTNNAC 8 cut(s) 641, 883, 1034, 1095, 1401, 1453, 1556, 2285
Hpy188III TCNNGA 9 cut(s) 346, 359, 606, 655, 905, 1058, 1523, 1898, 2328
Hpy8I GTNNAC 8 cut(s) 641, 883, 1034, 1095, 1401, 1453, 1556, 2285
HpyCH4III ACNGT 8 cut(s) 124, 180, 618, 628, 748, 887, 1427, 1457
HpyCH4IV ACGT 2 cut(s) 1802, 2536
HpyF10VI GCNNNNNNNGC 9 cut(s) 803, 812, 944, 1003, 1130, 1232, 1658, 1934, 2318
HpySE526I ACGT 2 cut(s) 1802, 2536
Hsp92I GRCGYC 1 cut(s) 867
HspAI GCGC 1 cut(s) 867
KasI GGCGCC 1 cut(s) 866
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 4 cut(s) 387, 1060, 1492, 2037
LmnI GCTCC 2 cut(s) 1184, 2341
Lsp1109I GCAGC 7 cut(s) 947, 1222, 1250, 1645, 1783, 1940, 2473
LweI GCATC 5 cut(s) 802, 1133, 1498, 1977, 2008
MaeI CTAG 5 cut(s) 932, 1496, 1872, 1898, 2381
MaeII ACGT 2 cut(s) 1802, 2536
MaeIII GTNAC 8 cut(s) 124, 233, 413, 905, 1045, 1196, 2054, 2499
MalI GATC 4 cut(s) 389, 1062, 1494, 2039
MboI GATC 4 cut(s) 387, 1060, 1492, 2037
MboII GAAGA 4 cut(s) 334, 1394, 1826, 2316
MhlI GDGCHC 2 cut(s) 1270, 2346
MlsI TGGCCA 1 cut(s) 111
MluNI TGGCCA 1 cut(s) 111
Mly113I GGCGCC 1 cut(s) 867
MlyI GAGTC 2 cut(s) 2171, 2325
MmeI TCCRAC 2 cut(s) 654, 2369
Mox20I TGGCCA 1 cut(s) 111
Mph1103I ATGCAT 2 cut(s) 791, 1513
MroXI GAANNNNTTC 2 cut(s) 329, 480
MscI TGGCCA 1 cut(s) 111
MslI CAYNNNNRTG 5 cut(s) 648, 1212, 1737, 2085, 2383
Msp20I TGGCCA 1 cut(s) 111
MspA1I CMGCKG 3 cut(s) 1316, 1796, 2486
MspCI CTTAAG 1 cut(s) 1085
MspI CCGG 4 cut(s) 430, 702, 1362, 2213
MspR9I CCNGG 4 cut(s) 104, 118, 1193, 2274
MssI GTTTAAAC 1 cut(s) 376
MvaI CCWGG 4 cut(s) 104, 118, 1193, 2274
MvnI CGCG 1 cut(s) 1524
MwoI GCNNNNNNNGC 9 cut(s) 803, 812, 944, 1003, 1130, 1232, 1658, 1934, 2318
NarI GGCGCC 1 cut(s) 867
NdeI CATATG 2 cut(s) 130, 1290
NdeII GATC 4 cut(s) 387, 1060, 1492, 2037
NlaIV GGNNCC 3 cut(s) 868, 1016, 1921
NmuCI GTSAC 6 cut(s) 124, 233, 905, 1045, 2054, 2499
NruI TCGCGA 1 cut(s) 1524
NsiI ATGCAT 2 cut(s) 791, 1513
NspI RCATGY 5 cut(s) 234, 241, 1688, 2123, 2283
PaeI GCATGC 1 cut(s) 1688
PciI ACATGT 3 cut(s) 230, 237, 2119
PdmI GAANNNNTTC 2 cut(s) 329, 480
PfeI GAWTC 4 cut(s) 458, 1592, 2094, 2436
PleI GAGTC 2 cut(s) 2170, 2325
PluTI GGCGCC 1 cut(s) 870
PmeI GTTTAAAC 1 cut(s) 376
PpsI GAGTC 2 cut(s) 2170, 2325
PscI ACATGT 3 cut(s) 230, 237, 2119
Psp1406I AACGTT 1 cut(s) 1802
Psp6I CCWGG 4 cut(s) 102, 116, 1191, 2272
PspEI GGTNACC 1 cut(s) 413
PspGI CCWGG 4 cut(s) 102, 116, 1191, 2272
PspN4I GGNNCC 3 cut(s) 868, 1016, 1921
PspPI GGNCC 2 cut(s) 148, 611
PsrI GAACNNNNNNTAC 2 cut(s) 843, 875
PstI CTGCAG 2 cut(s) 1240, 1958
PstNI CAGNNNCTG 1 cut(s) 2334
RruI TCGCGA 1 cut(s) 1524
RsaI GTAC 6 cut(s) 177, 884, 967, 1790, 2169, 2286
RsaNI GTAC 6 cut(s) 176, 883, 966, 1789, 2168, 2285
RseI CAYNNNNRTG 5 cut(s) 648, 1212, 1737, 2085, 2383
Sau3AI GATC 4 cut(s) 387, 1060, 1492, 2037
Sau96I GGNCC 2 cut(s) 148, 611
ScaI AGTACT 1 cut(s) 967
SchI GAGTC 2 cut(s) 2171, 2325
ScrFI CCNGG 4 cut(s) 104, 118, 1193, 2274
SduI GDGCHC 2 cut(s) 1270, 2346
SfaNI GCATC 5 cut(s) 802, 1133, 1498, 1977, 2008
SfcI CTRYAG 4 cut(s) 1236, 1656, 1954, 2233
SfoI GGCGCC 1 cut(s) 868
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 5 cut(s) 648, 1212, 1737, 2085, 2383
SmlI CTYRAG 3 cut(s) 301, 407, 1085
SmoI CTYRAG 3 cut(s) 301, 407, 1085
SphI GCATGC 1 cut(s) 1688
SsiI CCGC 6 cut(s) 1121, 1316, 1794, 2062, 2319, 2484
SspDI GGCGCC 1 cut(s) 866
SspI AATATT 3 cut(s) 825, 1673, 2468
SspMI CTAG 5 cut(s) 932, 1496, 1872, 1898, 2381
StyD4I CCNGG 4 cut(s) 102, 116, 1191, 2272
StyI CCWWGG 3 cut(s) 151, 211, 441
TaaI ACNGT 8 cut(s) 124, 180, 618, 628, 748, 887, 1427, 1457
TaiI ACGT 2 cut(s) 1805, 2539
TaqI TCGA 5 cut(s) 289, 358, 1394, 1717, 2439
TaqII GACCGA 1 cut(s) 1563
TatI WGTACW 6 cut(s) 175, 882, 965, 1788, 2167, 2284
TauI GCSGC 3 cut(s) 1124, 1319, 2321
TfiI GAWTC 4 cut(s) 458, 1592, 2094, 2436
TscAI CASTG 6 cut(s) 18, 255, 623, 751, 1027, 1969
TseFI GTSAC 6 cut(s) 124, 233, 905, 1045, 2054, 2499
TseI GCWGC 7 cut(s) 935, 1235, 1238, 1633, 1796, 1953, 2486
Tsp45I GTSAC 6 cut(s) 124, 233, 905, 1045, 2054, 2499
TspGWI ACGGA 3 cut(s) 1322, 1429, 1602
TspRI CASTG 6 cut(s) 18, 255, 623, 751, 1027, 1969
Vha464I CTTAAG 1 cut(s) 1085
VpaK11BI GGWCC 1 cut(s) 148
XagI CCTNNNNNAGG 1 cut(s) 534
XapI RAATTY 6 cut(s) 774, 1170, 1994, 2132, 2361, 2398
XbaI TCTAGA 1 cut(s) 1897
XceI RCATGY 5 cut(s) 234, 241, 1688, 2123, 2283
XcmI CCANNNNNNNNNTGG 1 cut(s) 2335
XmnI GAANNNNTTC 2 cut(s) 329, 480
XspI CTAG 5 cut(s) 932, 1496, 1872, 1898, 2381
ZrmI AGTACT 1 cut(s) 967
Zsp2I ATGCAT 2 cut(s) 791, 1513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.