Rroxscaffold_7G00194930

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000555
Physical Location & Seq
Forward (+)
37019804 .. 37031593
11790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00194930.1

Sequence Viewer

Length: 1095 bp
ATGACACAGGCTGATCTAGGCATTGCAGATGCATATATTAATGGAGACTTTTCTTTTGATGATAAAGACCGAGGTCTTCTAAATCTTTTTATGCTTCTCATTGCCAACAGAGATTCTAATGCGTCAAAATCAAACAAGAAAAGGAGATGGTGGCAGCCTTTGTTTTTCACAGCTACTATAGCCTCAGCCAAATATGTCTTTCAGCATGCTTTAAGGAAAAATAGTCTTACACAGGCTCGAAGGAACATATCTCGTCATTATGATCTGAGTAATGATCTATTTTCGCTGTTCTTGGGTGAAACAATGATGTATTCCACAGCAATATTTAAGACAGAAGATGAGGAACTGAATACTGCACAGCTTAGGAAAATCTCTACTCTCATTGATAAGGCTAGAATCGATGAGAGCCATGAGGTTCTAGAAATTGGTTGTGGTTGGGGAGCCTTAGCTATTGAAGCAGTCAAACAAACGGGTTGCAGATACACTGGCATCACTCTATCTGAAGAGCAACTGAAATTTGCTGAAAAAAAAGTGAAAGATGCTGGACTTCAGGACCGGATCAAGTTTCTTCTGTGTGACTATCGCCAATTGCCTTCTGACCAGAAATATGACAGAATCATAATTTGCGAGGTGCTAGAACATGTCGGCCATGAATTTGTGGATGAGTTTTTTTCTTGCTGTGACTCTTTACTAGTAGAAAATGGGATTCTTGTTCTGCAGTTCATATCTATACTGGATGAACTCTATGATGAGTATAGGCGATGCCCAGGCTTCATAAAGGAATATATATTTCCTGGTGGAAGTCTACTTTCATTAAGTAGGGTAATATCAGCCATGGCTGCTTCTTCTAGACTCTGTGTGGAGCACTTGGAAAACATTGGACATCATCATTATTACCAAACACTAAGATGTTGGAGAAAGAATTTTTTAGAGAGACAGAGTGAAATACTCGCTCTTGGATTCAATGAAAATTTCATTCGGACATGGGAATATTATTTTGATTATTGTGCTGCTGGTTTCAAGTCATATACACTTAGAGATTGCCAGATTGTGTTTTCACGTCCTGGTAATCCTCTCACGTTCAATAATCCATAG

Protein Analysis

364

Amino Acids

42.14

Weight (kDa)

6.03

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 76 - 346 6.8e-76 Mycolic acid cyclopropane synthetase
Methyltransf_23 PF13489 122 - 242 6.3e-10 Methyltransferase domain
MTS PF05175 133 - 239 7e-07 Methyltransferase small domain
PrmA PF06325 133 - 247 6.5e-06 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31 PF13847 134 - 251 2.7e-13 Methyltransferase domain
Methyltransf_25 PF13649 139 - 235 9.5e-17 Methyltransferase domain
Methyltransf_11 PF08241 140 - 239 2.7e-14 Methyltransferase domain
Methyltransf_12 PF08242 140 - 237 1.5e-13 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica MD16G1224400.v1.1
prunus_persica Prupe.1G045800_v2.0.a1
pyrus_communis pycom16g18780
rosa_chinensis RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 805
AclWI GGATC 1 cut(s) 566
AcoI YGGCCR 1 cut(s) 646
AcsI RAATTY 4 cut(s) 515, 653, 922, 970
AcuI CTGAAG 2 cut(s) 522, 533
AflIII ACRYGT 1 cut(s) 640
AgsI TTSAA 4 cut(s) 455, 964, 1021, 1084
AhlI ACTAGT 1 cut(s) 691
AjiI CACGTC 1 cut(s) 1061
AjnI CCWGG 3 cut(s) 766, 793, 1063
AluBI AGCT 3 cut(s) 173, 361, 449
AluI AGCT 3 cut(s) 173, 361, 449
Alw21I GWGCWC 1 cut(s) 867
Alw26I GTCTC 2 cut(s) 39, 928
AlwI GGATC 1 cut(s) 566
AoxI GGCC 1 cut(s) 646
ApeKI GCWGC 3 cut(s) 154, 839, 1010
ApoI RAATTY 4 cut(s) 515, 653, 922, 970
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AseI ATTAAT 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 553
AsuHPI GGTGA 1 cut(s) 308
AvaII GGWCC 1 cut(s) 553
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 867
BbvCI CCTCAGC 1 cut(s) 184
BbvI GCAGC 3 cut(s) 166, 826, 997
BccI CCATC 1 cut(s) 141
BciT130I CCWGG 3 cut(s) 768, 795, 1065
BcoDI GTCTC 2 cut(s) 39, 928
BcuI ACTAGT 1 cut(s) 691
BfaI CTAG 6 cut(s) 17, 393, 419, 635, 692, 849
BfmI CTRYAG 2 cut(s) 177, 716
BisI GCNGC 3 cut(s) 155, 840, 1011
BlsI GCNGC 3 cut(s) 156, 841, 1012
Bme1390I CCNGG 3 cut(s) 768, 795, 1065
Bme18I GGWCC 1 cut(s) 553
BmgBI CACGTC 1 cut(s) 1061
BmgT120I GGNCC 1 cut(s) 553
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 3 cut(s) 768, 795, 1065
BmsI GCATC 4 cut(s) 19, 498, 529, 752
BoxI GACNNNNGTC 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 68
Bpu10I CCTNAGC 3 cut(s) 184, 362, 445
Bsa29I ATCGAT 1 cut(s) 399
BsaJI CCNNGG 3 cut(s) 70, 766, 834
BsaWI WCCGGW 1 cut(s) 555
Bse1I ACTGG 2 cut(s) 490, 738
Bse3DI GCAATG 2 cut(s) 21, 99
BseBI CCWGG 3 cut(s) 768, 795, 1065
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 3 cut(s) 70, 766, 834
BseGI GGATG 2 cut(s) 667, 742
BseMI GCAATG 2 cut(s) 21, 99
BseMII CTCAG 2 cut(s) 198, 257
BseNI ACTGG 2 cut(s) 490, 738
BseXI GCAGC 3 cut(s) 166, 826, 997
BsgI GTGCAG 1 cut(s) 339
BshFI GGCC 1 cut(s) 648
BshVI ATCGAT 1 cut(s) 399
BsiHKAI GWGCWC 1 cut(s) 867
BsiSI CCGG 1 cut(s) 556
BsmAI GTCTC 2 cut(s) 39, 928
BsnI GGCC 1 cut(s) 648
Bsp1286I GDGCHC 1 cut(s) 867
Bsp143I GATC 4 cut(s) 13, 262, 274, 558
Bsp19I CCATGG 1 cut(s) 834
BspANI GGCC 1 cut(s) 648
BspCNI CTCAG 2 cut(s) 197, 258
BspDI ATCGAT 1 cut(s) 399
BspLI GGNNCC 1 cut(s) 442
BspMAI CTGCAG 1 cut(s) 720
BspPI GGATC 1 cut(s) 566
BspQI GCTCTTC 1 cut(s) 498
BsrDI GCAATG 2 cut(s) 21, 99
BsrI ACTGG 2 cut(s) 490, 738
BssECI CCNNGG 3 cut(s) 70, 766, 834
BssMI GATC 4 cut(s) 13, 262, 274, 558
BssT1I CCWWGG 1 cut(s) 834
Bst2UI CCWGG 3 cut(s) 768, 795, 1065
Bst6I CTCTTC 1 cut(s) 498
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 6 cut(s) 184, 266, 362, 445, 905, 1034
BstDSI CCRYGG 1 cut(s) 834
BstF5I GGATG 2 cut(s) 667, 742
BstKTI GATC 4 cut(s) 16, 265, 277, 561
BstMAI GTCTC 2 cut(s) 39, 928
BstMBI GATC 4 cut(s) 13, 262, 274, 558
BstMWI GCNNNNNNNGC 3 cut(s) 179, 455, 839
BstNI CCWGG 3 cut(s) 768, 795, 1065
BstNSI RCATGY 2 cut(s) 209, 644
BstPAI GACNNNNGTC 1 cut(s) 72
BstSCI CCNGG 3 cut(s) 766, 793, 1063
BstSFI CTRYAG 2 cut(s) 177, 716
BstV1I GCAGC 3 cut(s) 166, 826, 997
BstV2I GAAGAC 1 cut(s) 68
Bsu15I ATCGAT 1 cut(s) 399
BsuRI GGCC 1 cut(s) 648
BsuTUI ATCGAT 1 cut(s) 399
BtgI CCRYGG 1 cut(s) 834
BtgZI GCGATG 1 cut(s) 775
BtrI CACGTC 1 cut(s) 1061
BtsCI GGATG 2 cut(s) 667, 742
BtsIMutI CAGTG 1 cut(s) 483
Cac8I GCNNGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 553
ClaI ATCGAT 1 cut(s) 399
CseI GACGC 1 cut(s) 111
CviAII CATG 6 cut(s) 206, 410, 641, 650, 835, 984
DdeI CTNAG 6 cut(s) 184, 266, 362, 445, 905, 1034
DpnI GATC 4 cut(s) 15, 264, 276, 560
DpnII GATC 4 cut(s) 13, 262, 274, 558
EaeI YGGCCR 1 cut(s) 646
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco130I CCWWGG 1 cut(s) 834
Eco47I GGWCC 1 cut(s) 553
Eco57I CTGAAG 2 cut(s) 522, 533
EcoRII CCWGG 3 cut(s) 766, 793, 1063
EcoT14I CCWWGG 1 cut(s) 834
EcoT22I ATGCAT 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 834
FaeI CATG 6 cut(s) 209, 413, 644, 653, 838, 987
FatI CATG 6 cut(s) 205, 409, 640, 649, 834, 983
FblI GTMKAC 1 cut(s) 805
Fnu4HI GCNGC 3 cut(s) 155, 840, 1011
FokI GGATG 2 cut(s) 674, 749
Fsp4HI GCNGC 3 cut(s) 155, 840, 1011
FspBI CTAG 6 cut(s) 17, 393, 419, 635, 692, 849
GluI GCNGC 3 cut(s) 155, 840, 1011
HaeIII GGCC 1 cut(s) 648
HapII CCGG 1 cut(s) 556
HgaI GACGC 1 cut(s) 111
Hin1II CATG 6 cut(s) 209, 413, 644, 653, 838, 987
HinfI GANTC 7 cut(s) 113, 396, 615, 683, 706, 852, 960
HpaII CCGG 1 cut(s) 556
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 806
Hpy188I TCNGA 4 cut(s) 267, 502, 598, 981
Hpy188III TCNNGA 3 cut(s) 419, 551, 849
Hpy8I GTNNAC 1 cut(s) 806
HpyAV CCTTC 2 cut(s) 234, 603
HpyCH4IV ACGT 2 cut(s) 1060, 1079
HpyCH4V TGCA 5 cut(s) 26, 32, 356, 477, 718
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 455, 839
HpyF3I CTNAG 6 cut(s) 184, 266, 362, 445, 905, 1034
HpySE526I ACGT 2 cut(s) 1060, 1079
Hsp92II CATG 6 cut(s) 209, 413, 644, 653, 838, 987
Kzo9I GATC 4 cut(s) 13, 262, 274, 558
LguI GCTCTTC 1 cut(s) 498
LmnI GCTCC 2 cut(s) 440, 862
Lsp1109I GCAGC 3 cut(s) 166, 826, 997
LweI GCATC 4 cut(s) 19, 498, 529, 752
MaeI CTAG 6 cut(s) 17, 393, 419, 635, 692, 849
MaeII ACGT 2 cut(s) 1060, 1079
MaeIII GTNAC 2 cut(s) 575, 680
MalI GATC 4 cut(s) 15, 264, 276, 560
MboI GATC 4 cut(s) 13, 262, 274, 558
MboII GAAGA 5 cut(s) 68, 347, 515, 560, 837
MfeI CAATTG 1 cut(s) 587
MhlI GDGCHC 1 cut(s) 867
MluCI AATT 7 cut(s) 423, 515, 587, 621, 653, 922, 970
MlyI GAGTC 2 cut(s) 677, 846
MmeI TCCRAC 1 cut(s) 893
MnlI CCTC 6 cut(s) 65, 193, 334, 406, 622, 1083
Mph1103I ATGCAT 1 cut(s) 34
MseI TTAA 4 cut(s) 39, 212, 327, 815
MslI CAYNNNNRTG 1 cut(s) 907
MspI CCGG 1 cut(s) 556
MspR9I CCNGG 3 cut(s) 768, 795, 1065
MunI CAATTG 1 cut(s) 587
MvaI CCWGG 3 cut(s) 768, 795, 1065
MwoI GCNNNNNNNGC 3 cut(s) 179, 455, 839
NcoI CCATGG 1 cut(s) 834
NdeII GATC 4 cut(s) 13, 262, 274, 558
NlaIII CATG 6 cut(s) 209, 413, 644, 653, 838, 987
NlaIV GGNNCC 1 cut(s) 442
NmuCI GTSAC 2 cut(s) 575, 680
NsiI ATGCAT 1 cut(s) 34
NspI RCATGY 2 cut(s) 209, 644
PaeI GCATGC 1 cut(s) 209
PciI ACATGT 1 cut(s) 640
PciSI GCTCTTC 1 cut(s) 498
PfeI GAWTC 5 cut(s) 113, 396, 615, 706, 960
PkrI GCNGC 3 cut(s) 156, 841, 1012
PleI GAGTC 2 cut(s) 677, 846
PpsI GAGTC 2 cut(s) 677, 846
PscI ACATGT 1 cut(s) 640
PshAI GACNNNNGTC 1 cut(s) 72
PshBI ATTAAT 1 cut(s) 39
Psp6I CCWGG 3 cut(s) 766, 793, 1063
PspGI CCWGG 3 cut(s) 766, 793, 1063
PspN4I GGNNCC 1 cut(s) 442
PspPI GGNCC 1 cut(s) 553
PstI CTGCAG 1 cut(s) 720
RseI CAYNNNNRTG 1 cut(s) 907
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 4 cut(s) 39, 212, 327, 815
SatI GCNGC 3 cut(s) 155, 840, 1011
Sau3AI GATC 4 cut(s) 13, 262, 274, 558
Sau96I GGNCC 1 cut(s) 553
SchI GAGTC 2 cut(s) 677, 846
ScrFI CCNGG 3 cut(s) 768, 795, 1065
SduI GDGCHC 1 cut(s) 867
SetI ASST 8 cut(s) 76, 175, 363, 417, 451, 633, 1063, 1082
SfaNI GCATC 4 cut(s) 19, 498, 529, 752
SfcI CTRYAG 2 cut(s) 177, 716
SinI GGWCC 1 cut(s) 553
SmiMI CAYNNNNRTG 1 cut(s) 907
SpeI ACTAGT 1 cut(s) 691
SphI GCATGC 1 cut(s) 209
Sse9I AATT 7 cut(s) 423, 515, 587, 621, 653, 922, 970
SspI AATATT 2 cut(s) 324, 992
SspMI CTAG 6 cut(s) 17, 393, 419, 635, 692, 849
StyD4I CCNGG 3 cut(s) 766, 793, 1063
StyI CCWWGG 1 cut(s) 834
TaiI ACGT 2 cut(s) 1063, 1082
TaqI TCGA 2 cut(s) 238, 399
TaqII GACCGA 1 cut(s) 84
TasI AATT 7 cut(s) 423, 515, 587, 621, 653, 922, 970
TfiI GAWTC 5 cut(s) 113, 396, 615, 706, 960
Tru1I TTAA 4 cut(s) 39, 212, 327, 815
Tru9I TTAA 4 cut(s) 39, 212, 327, 815
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 2 cut(s) 575, 680
TseI GCWGC 3 cut(s) 154, 839, 1010
Tsp45I GTSAC 2 cut(s) 575, 680
TspDTI ATGAA 7 cut(s) 666, 712, 753, 763, 801, 964, 981
TspRI CASTG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 553
VspI ATTAAT 1 cut(s) 39
XapI RAATTY 4 cut(s) 515, 653, 922, 970
XbaI TCTAGA 2 cut(s) 418, 848
XceI RCATGY 2 cut(s) 209, 644
XmiI GTMKAC 1 cut(s) 805
XspI CTAG 6 cut(s) 17, 393, 419, 635, 692, 849
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.