Rmu_ssc0000009.1_g000024

Mycolic acid cyclopropane synthetase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000009.1
OG0000555
Physical Location & Seq
Forward (+)
92340 .. 97006
4667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000009.1_g000024.1.cds

Sequence Viewer

Length: 669 bp
atgcttgacagctggagtccacttcattcgtcaactcatcctcctccatgctatgctgatttcatgtataagtcaacacctcccctcaatctcagtaggggaaacaatactgagattggtacagtgagctttgaaaatgggactgtgaagacctttgtcctagagttgggctgtggttggggaggcttcgccattgaagtcgtcaagcaaaccggttgtagatacactggcataactttgtcgaaggaacaagtgcaatttgctgaaaagaaagtgaatgatgctggccttcaggaaagcatcaaaattatgctgcgtgactaccgcgaattgcctcagaactacaaatatgacagaattatttgttgtgagatgctagaacatgtcggccatgaatttatggaggaattcttttcttgttgtgactctatgctatcagaaaatgggcttcttattctacagttcacattctttccggatgagcgttacgatgaatataggcgaagttcagacttcataaaggagtatatttttccgggtggattgttaccttcattaagtagggtaacatcagctatggttgcttcttccaggttcagtgtgcagcacttggaaaacattggaattcattattaccaaacactaagatattggagaaaaacattctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase CMAS NAD_binding_8

Protein Analysis

222

Amino Acids

25.68

Weight (kDa)

5.71

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica MD16G1224400.v1.1
prunus_persica Prupe.1G045800_v2.0.a1
pyrus_communis pycom16g18780
rosa_chinensis RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 327
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 1 cut(s) 325
AcoI YGGCCR 1 cut(s) 388
AcsI RAATTY 3 cut(s) 395, 407, 624
AcuI CTGAAG 1 cut(s) 275
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 166
AflIII ACRYGT 1 cut(s) 382
AgeI ACCGGT 1 cut(s) 212
AgsI TTSAA 2 cut(s) 134, 197
AjnI CCWGG 1 cut(s) 590
AluBI AGCT 3 cut(s) 12, 129, 575
AluI AGCT 3 cut(s) 12, 129, 575
Aor13HI TCCGGA 1 cut(s) 475
AoxI GGCC 2 cut(s) 286, 388
ApeKI GCWGC 2 cut(s) 313, 604
ApoI RAATTY 3 cut(s) 395, 407, 624
AsiGI ACCGGT 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 537
BbsI GAAGAC 1 cut(s) 155
BbvI GCAGC 2 cut(s) 300, 616
BciT130I CCWGG 1 cut(s) 592
BcnI CCSGG 1 cut(s) 537
BfaI CTAG 3 cut(s) 161, 377, 667
BfmI CTRYAG 1 cut(s) 458
BisI GCNGC 2 cut(s) 314, 605
BlsI GCNGC 2 cut(s) 315, 606
Bme1390I CCNGG 2 cut(s) 537, 592
BmrFI CCNGG 2 cut(s) 537, 592
BmsI GCATC 3 cut(s) 271, 309, 363
BoxI GACNNNNGTC 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 155
BpmI CTGGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 537
BsaWI WCCGGW 2 cut(s) 212, 475
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 232
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 1 cut(s) 592
BseGI GGATG 2 cut(s) 37, 484
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 3 cut(s) 102, 106, 350
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 33
BseXI GCAGC 2 cut(s) 300, 616
BsgI GTGCAG 1 cut(s) 623
Bsh1236I CGCG 1 cut(s) 327
BshFI GGCC 2 cut(s) 288, 390
BshTI ACCGGT 1 cut(s) 212
BsiSI CCGG 3 cut(s) 213, 476, 536
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 2 cut(s) 288, 390
Bsp13I TCCGGA 1 cut(s) 475
BspACI CCGC 1 cut(s) 325
BspANI GGCC 2 cut(s) 288, 390
BspCNI CTCAG 3 cut(s) 103, 105, 349
BspEI TCCGGA 1 cut(s) 475
BspFNI CGCG 1 cut(s) 327
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 592
Bst4CI ACNGT 3 cut(s) 124, 145, 462
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 4 cut(s) 92, 111, 336, 644
BstF5I GGATG 2 cut(s) 37, 484
BstFNI CGCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 1 cut(s) 592
BstNSI RCATGY 1 cut(s) 386
BstPAI GACNNNNGTC 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 535, 590
BstSFI CTRYAG 1 cut(s) 458
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 2 cut(s) 300, 616
BstV2I GAAGAC 1 cut(s) 155
BsuRI GGCC 2 cut(s) 288, 390
BtsCI GGATG 2 cut(s) 37, 484
BtsIMutI CAGTG 3 cut(s) 129, 225, 604
Cac8I GCNNGC 1 cut(s) 286
Cfr10I RCCGGY 1 cut(s) 212
Csp6I GTAC 1 cut(s) 120
CspAI ACCGGT 1 cut(s) 212
CviAII CATG 4 cut(s) 48, 64, 383, 392
CviJI RGCY 8 cut(s) 12, 129, 171, 186, 288, 390, 448, 575
CviKI_1 RGCY 8 cut(s) 12, 129, 171, 186, 288, 390, 448, 575
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 4 cut(s) 92, 111, 336, 644
EaeI YGGCCR 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 275
EcoRI GAATTC 2 cut(s) 407, 624
EcoRII CCWGG 1 cut(s) 590
FaeI CATG 4 cut(s) 51, 67, 386, 395
FaqI GGGAC 1 cut(s) 154
FatI CATG 4 cut(s) 47, 63, 382, 391
Fnu4HI GCNGC 2 cut(s) 314, 605
FokI GGATG 2 cut(s) 24, 491
Fsp4HI GCNGC 2 cut(s) 314, 605
FspBI CTAG 3 cut(s) 161, 377, 667
GluI GCNGC 2 cut(s) 314, 605
GsuI CTGGAG 1 cut(s) 34
HaeIII GGCC 2 cut(s) 288, 390
HapII CCGG 3 cut(s) 213, 476, 536
Hin1II CATG 4 cut(s) 51, 67, 386, 395
HincII GTYRAC 2 cut(s) 33, 75
HindII GTYRAC 2 cut(s) 33, 75
HinfI GANTC 2 cut(s) 16, 425
HpaII CCGG 3 cut(s) 213, 476, 536
Hpy166II GTNNAC 4 cut(s) 20, 33, 75, 465
Hpy188I TCNGA 3 cut(s) 339, 439, 511
Hpy188III TCNNGA 2 cut(s) 293, 476
Hpy8I GTNNAC 4 cut(s) 20, 33, 75, 465
HpyAV CCTTC 3 cut(s) 238, 299, 561
HpyCH4III ACNGT 3 cut(s) 124, 145, 462
HpyCH4V TGCA 2 cut(s) 256, 604
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 4 cut(s) 92, 111, 336, 644
Hsp92II CATG 4 cut(s) 51, 67, 386, 395
Kpn2I TCCGGA 1 cut(s) 475
LpnPI CCDG 8 cut(s) 213, 226, 270, 278, 489, 549, 577, 604
Lsp1109I GCAGC 2 cut(s) 300, 616
LweI GCATC 3 cut(s) 271, 309, 363
MaeI CTAG 3 cut(s) 161, 377, 667
MaeIII GTNAC 5 cut(s) 317, 422, 485, 546, 565
MboII GAAGA 2 cut(s) 160, 579
MluCI AATT 7 cut(s) 257, 306, 329, 357, 395, 407, 624
MlyI GAGTC 2 cut(s) 25, 419
MnlI CCTC 7 cut(s) 51, 54, 90, 95, 176, 345, 397
MroI TCCGGA 1 cut(s) 475
MseI TTAA 1 cut(s) 557
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 3 cut(s) 213, 476, 536
MspR9I CCNGG 2 cut(s) 537, 592
MvaI CCWGG 1 cut(s) 592
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 581
NciI CCSGG 1 cut(s) 537
NlaIII CATG 4 cut(s) 51, 67, 386, 395
NmuCI GTSAC 2 cut(s) 317, 422
NspI RCATGY 1 cut(s) 386
PciI ACATGT 1 cut(s) 382
PinAI ACCGGT 1 cut(s) 212
PkrI GCNGC 2 cut(s) 315, 606
PleI GAGTC 2 cut(s) 24, 419
PpsI GAGTC 2 cut(s) 24, 419
PscI ACATGT 1 cut(s) 382
PshAI GACNNNNGTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 590
PspGI CCWGG 1 cut(s) 590
PvuII CAGCTG 1 cut(s) 12
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 557
SatI GCNGC 2 cut(s) 314, 605
SchI GAGTC 2 cut(s) 25, 419
ScrFI CCNGG 2 cut(s) 537, 592
SetI ASST 7 cut(s) 14, 82, 131, 155, 553, 577, 596
SfaNI GCATC 3 cut(s) 271, 309, 363
SfcI CTRYAG 1 cut(s) 458
Sse9I AATT 7 cut(s) 257, 306, 329, 357, 395, 407, 624
SsiI CCGC 1 cut(s) 325
SspMI CTAG 3 cut(s) 161, 377, 667
StyD4I CCNGG 2 cut(s) 535, 590
TaaI ACNGT 3 cut(s) 124, 145, 462
TaqI TCGA 1 cut(s) 242
TasI AATT 7 cut(s) 257, 306, 329, 357, 395, 407, 624
Tru1I TTAA 1 cut(s) 557
Tru9I TTAA 1 cut(s) 557
TscAI CASTG 3 cut(s) 129, 232, 604
TseFI GTSAC 2 cut(s) 317, 422
TseI GCWGC 2 cut(s) 313, 604
Tsp45I GTSAC 2 cut(s) 317, 422
TspDTI ATGAA 7 cut(s) 14, 52, 408, 505, 507, 543, 617
TspRI CASTG 3 cut(s) 129, 232, 604
XapI RAATTY 3 cut(s) 395, 407, 624
XceI RCATGY 1 cut(s) 386
XspI CTAG 3 cut(s) 161, 377, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.