AT3G23480

BEST Arabidopsis thaliana protein match is Cyclopropane-fatty-acyl-phospholipid synthase (TAIR

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
8418778 .. 8422975
4198 bp
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UTR
Exon/CDS
Intron
AT3G23480.2

Sequence Viewer

Length: 1344 bp
ATGGTAATTGCACGAGGTTTGTTAGGGATACAAACAACTCTTGTGAAAAATATGCAACATATGGTATTTTCCCTAACCGAAGCAGGGGCTCGACTTTTCGTTACCAGATTCTTTAGACAATTCATATCGATCGGTTGTGTAACGATACTAGAAGGAGACACGATATTCATATTTGGGGAAAATGAATCTACTTGTCCTTTGAAATCTATCCTCAAGATTCACAGTCCTCAGTTTTACTGGAAGGTTATGACACTAGCAGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATCTGATTATGATTCTCATTGCAAACAGAGACCTGAACTCACGAAAATCAAACCTTGCCAAGAAAAGGGGATGGTGGACACCAGTGTTTCTAACTGCCAGCTTAGCATCTGCAACATATTATCTAAAGCATGTCTGTAGACAGAACACTTTAACTCAAGCTCGAAGGAACGTTTCTAGTCATTATGACCTTAGCAACGAGTTTTTCGGTCTCTTCATGGATGATACCATGATGTACTCCTCTGCAGTATTCAAGTCAGAAAATGAGAATCTTAGAACTGCACAGATGAGAAAAATACATCTTTTAATCGAAAAGGATAAAGAAGAACCATATGAGGTTTTAGAGATAGGATGCGGATGGGGAACTTTAGCCATAGAAGTTGTGAAAAGAACTGGATGCAAATACACTGGCTTTACTCTATCTATTGAACAACTTAAATATGTAGAAGAGAAAGTTAAAGAAGCTGGACTTCAGGAGCGGATTACGTTTAAGCTCTGCGATTATCGCCAACTATGTGATACTCAAAAATATGACAGAATTATATCTTGTGAGATGATAGAACATGTTGGCCACAAATTCATGGAGACATTTTTCAGTCACTGTGAAGCTGCGCTTGCAGAAGACGGCATTTTTGTCCTCCAGTTCACAGCAATACCTGAGGAGCTTTACGACGAGAGCAGACTAACTTCAGGTTTCATAACGGAATACATATTCCCTGGTGGATGTCTTCCTTCTTTAGCCAGAGTTACTTCAGCCATGGCCTCTTCCTCTAGGCTATGCATTGAAAACGTTGAGAACATTGGGATTCATTACTATCCTACGTTGAGATACTGGAGGAAGAACTTATTGGAGAGACAAAAACAAATCATTGATCTTGGATTCGACGAGAAATTCTTAAGGACATGGGAATATTATTTCGACTACTGTGCAGCTGGGTTCAAGACTCTTACCCTTAGAAACTACCAGGTAACACACACACACTCGAGCACATTAACCAGAAACATAACCATGCTTTAG

Protein Analysis

447

Amino Acids

51.55

Weight (kDa)

6.83

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 153 - 410 8.9e-64 Mycolic acid cyclopropane synthetase
Methyltransf_23 PF13489 191 - 302 1.8e-09 Methyltransferase domain
Methyltransf_31 PF13847 199 - 315 4e-09 Methyltransferase domain
Methyltransf_25 PF13649 201 - 297 1.8e-14 Methyltransferase domain
Methyltransf_11 PF08241 202 - 301 8e-10 Methyltransferase domain
Methyltransf_12 PF08242 202 - 299 1.9e-09 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000555)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 805
AccI GTMKAC 1 cut(s) 466
AciI CCGC 2 cut(s) 681, 805
AclI AACGTT 2 cut(s) 498, 1116
AcoI YGGCCR 1 cut(s) 895
AcsI RAATTY 2 cut(s) 902, 1217
AcuI CTGAAG 3 cut(s) 782, 999, 1062
AfaI GTAC 1 cut(s) 563
AfiI CCNNNNNNNGG 2 cut(s) 84, 393
AflII CTTAAG 1 cut(s) 1222
AflIII ACRYGT 1 cut(s) 889
AgsI TTSAA 6 cut(s) 202, 328, 580, 755, 1112, 1267
AjnI CCWGG 2 cut(s) 1042, 1290
AjuI GAANNNNNNNTTGG 2 cut(s) 1157, 1189
AluBI AGCT 7 cut(s) 429, 488, 791, 820, 935, 991, 1259
AluI AGCT 7 cut(s) 429, 488, 791, 820, 935, 991, 1259
Alw21I GWGCWC 1 cut(s) 1316
Alw26I GTCTC 5 cut(s) 150, 351, 542, 905, 1174
AlwNI CAGNNNCTG 1 cut(s) 927
Ama87I CYCGRG 1 cut(s) 1309
AoxI GGCC 2 cut(s) 895, 1086
ApeKI GCWGC 2 cut(s) 935, 1256
ApoI RAATTY 2 cut(s) 902, 1217
ArsI GACNNNNNNTTYG 2 cut(s) 941, 973
AspLEI GCGC 1 cut(s) 940
AvaI CYCGRG 1 cut(s) 1309
AxyI CCTNAGG 1 cut(s) 984
BalI TGGCCA 1 cut(s) 897
BanII GRGCYC 1 cut(s) 91
BauI CACGAG 1 cut(s) 12
BbsI GAAGAC 2 cut(s) 954, 1046
Bbv12I GWGCWC 1 cut(s) 1316
BbvI GCAGC 2 cut(s) 922, 1268
BccI CCATC 2 cut(s) 393, 678
BceAI ACGGC 1 cut(s) 967
BcgI CGANNNNNNTGC 2 cut(s) 1235, 1269
BciT130I CCWGG 2 cut(s) 1044, 1292
BciVI GTATCC 1 cut(s) 21
BcoDI GTCTC 5 cut(s) 150, 351, 542, 905, 1174
BfaI CTAG 4 cut(s) 149, 254, 504, 1098
BfmI CTRYAG 2 cut(s) 463, 570
BfrI CTTAAG 1 cut(s) 1222
BfuI GTATCC 1 cut(s) 21
BisI GCNGC 2 cut(s) 936, 1257
BlpI GCTNAGC 1 cut(s) 430
BlsI GCNGC 2 cut(s) 937, 1258
Bme1390I CCNGG 2 cut(s) 1044, 1292
BmeT110I CYCGRG 1 cut(s) 1309
BmrFI CCNGG 2 cut(s) 1044, 1292
BmsI GCATC 4 cut(s) 265, 443, 668, 713
BpiI GAAGAC 2 cut(s) 954, 1046
BpmI CTGGAG 2 cut(s) 950, 1180
Bpu10I CCTNAGC 1 cut(s) 518
Bpu1102I GCTNAGC 1 cut(s) 430
BpuEI CTTGAG 2 cut(s) 197, 468
Bsa29I ATCGAT 1 cut(s) 128
BsaI GGTCTC 2 cut(s) 351, 542
BsaJI CCNNGG 2 cut(s) 1042, 1083
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 393
Bse1I ACTGG 6 cut(s) 242, 410, 724, 739, 967, 1163
Bse21I CCTNAGG 1 cut(s) 984
Bse3DI GCAATG 1 cut(s) 345
BseBI CCWGG 2 cut(s) 1044, 1292
BseCI ATCGAT 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 1042, 1083
BseGI GGATG 6 cut(s) 404, 553, 683, 689, 728, 1055
BseLI CCNNNNNNNGG 2 cut(s) 84, 393
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 3 cut(s) 242, 330, 975
BseNI ACTGG 6 cut(s) 242, 410, 724, 739, 967, 1163
BseRI GAGGAG 2 cut(s) 556, 1001
BseXI GCAGC 2 cut(s) 922, 1268
BseYI CCCAGC 1 cut(s) 1259
BsgI GTGCAG 2 cut(s) 591, 1275
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 897, 1088
BshVI ATCGAT 1 cut(s) 128
BsiEI CGRYCG 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 1316
BsiHKCI CYCGRG 1 cut(s) 1309
BslI CCNNNNNNNGG 2 cut(s) 84, 393
BsmAI GTCTC 5 cut(s) 150, 351, 542, 905, 1174
BsnI GGCC 2 cut(s) 897, 1088
Bso31I GGTCTC 2 cut(s) 351, 542
BsoBI CYCGRG 1 cut(s) 1309
Bsp1286I GDGCHC 2 cut(s) 91, 1316
Bsp143I GATC 2 cut(s) 129, 1198
Bsp1720I GCTNAGC 1 cut(s) 430
Bsp19I CCATGG 1 cut(s) 1083
BspACI CCGC 2 cut(s) 681, 805
BspANI GGCC 2 cut(s) 897, 1088
BspCNI CTCAG 3 cut(s) 241, 329, 976
BspDI ATCGAT 1 cut(s) 128
BspMAI CTGCAG 1 cut(s) 574
BspTI CTTAAG 1 cut(s) 1222
BspTNI GGTCTC 2 cut(s) 351, 542
BsrBI CCGCTC 1 cut(s) 805
BsrDI GCAATG 1 cut(s) 345
BsrI ACTGG 6 cut(s) 242, 410, 724, 739, 967, 1163
BssECI CCNNGG 2 cut(s) 1042, 1083
BssMI GATC 2 cut(s) 129, 1198
BssSI CACGAG 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 1083
Bst2BI CACGAG 1 cut(s) 12
Bst2UI CCWGG 2 cut(s) 1044, 1292
Bst4CI ACNGT 3 cut(s) 224, 929, 1253
Bst6I CTCTTC 3 cut(s) 545, 768, 1096
BstAFI CTTAAG 1 cut(s) 1222
BstC8I GCNNGC 2 cut(s) 427, 942
BstDEI CTNAG 7 cut(s) 228, 316, 430, 518, 599, 984, 1280
BstDSI CCRYGG 1 cut(s) 1083
BstF5I GGATG 6 cut(s) 404, 553, 683, 689, 728, 1055
BstHHI GCGC 1 cut(s) 940
BstKTI GATC 2 cut(s) 132, 1201
BstMAI GTCTC 5 cut(s) 150, 351, 542, 905, 1174
BstMBI GATC 2 cut(s) 129, 1198
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 3 cut(s) 431, 831, 941
BstNI CCWGG 2 cut(s) 1044, 1292
BstNSI RCATGY 2 cut(s) 461, 893
BstSCI CCNGG 2 cut(s) 1042, 1290
BstSFI CTRYAG 2 cut(s) 463, 570
BstV1I GCAGC 2 cut(s) 922, 1268
BstV2I GAAGAC 2 cut(s) 954, 1046
Bsu15I ATCGAT 1 cut(s) 128
Bsu36I CCTNAGG 1 cut(s) 984
BsuI GTATCC 1 cut(s) 21
BsuRI GGCC 2 cut(s) 897, 1088
BsuTUI ATCGAT 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 1083
BtsCI GGATG 6 cut(s) 404, 553, 683, 689, 728, 1055
BtsIMutI CAGTG 3 cut(s) 417, 732, 925
Cac8I GCNNGC 2 cut(s) 427, 942
CaiI CAGNNNCTG 1 cut(s) 927
CfoI GCGC 1 cut(s) 940
ClaI ATCGAT 1 cut(s) 128
CsiI ACCWGGT 1 cut(s) 1290
Csp6I GTAC 1 cut(s) 562
CviAII CATG 8 cut(s) 458, 544, 556, 890, 907, 1084, 1230, 1336
CviQI GTAC 1 cut(s) 562
DdeI CTNAG 7 cut(s) 228, 316, 430, 518, 599, 984, 1280
DpnI GATC 2 cut(s) 131, 1200
DpnII GATC 2 cut(s) 129, 1198
EaeI YGGCCR 1 cut(s) 895
Eam1104I CTCTTC 3 cut(s) 545, 768, 1096
EarI CTCTTC 3 cut(s) 545, 768, 1096
Eco130I CCWWGG 1 cut(s) 1083
Eco24I GRGCYC 1 cut(s) 91
Eco31I GGTCTC 2 cut(s) 351, 542
Eco57I CTGAAG 3 cut(s) 782, 999, 1062
Eco81I CCTNAGG 1 cut(s) 984
Eco88I CYCGRG 1 cut(s) 1309
EcoRII CCWGG 2 cut(s) 1042, 1290
EcoT14I CCWWGG 1 cut(s) 1083
EcoT22I ATGCAT 1 cut(s) 1109
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 1083
FaeI CATG 8 cut(s) 461, 547, 559, 893, 910, 1087, 1233, 1339
FalI AAGNNNNNCTT 4 cut(s) 780, 812, 924, 956
FatI CATG 8 cut(s) 457, 543, 555, 889, 906, 1083, 1229, 1335
FauNDI CATATG 2 cut(s) 60, 658
FblI GTMKAC 1 cut(s) 466
Fnu4HI GCNGC 2 cut(s) 936, 1257
FokI GGATG 6 cut(s) 411, 560, 690, 696, 735, 1062
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 2 cut(s) 936, 1257
FspBI CTAG 4 cut(s) 149, 254, 504, 1098
GlaI GCGC 1 cut(s) 939
GluI GCNGC 2 cut(s) 936, 1257
GsaI CCCAGC 1 cut(s) 1263
GsuI CTGGAG 2 cut(s) 950, 1180
HaeIII GGCC 2 cut(s) 897, 1088
HhaI GCGC 1 cut(s) 940
Hin1II CATG 8 cut(s) 461, 547, 559, 893, 910, 1087, 1233, 1339
Hin6I GCGC 1 cut(s) 938
HinP1I GCGC 1 cut(s) 938
Hpy166II GTNNAC 3 cut(s) 405, 467, 972
Hpy188I TCNGA 2 cut(s) 333, 586
Hpy188III TCNNGA 5 cut(s) 214, 318, 369, 800, 1267
Hpy8I GTNNAC 3 cut(s) 405, 467, 972
Hpy99I CGWCG 3 cut(s) 308, 1001, 1214
HpyAV CCTTC 4 cut(s) 146, 235, 486, 1068
HpyCH4III ACNGT 3 cut(s) 224, 929, 1253
HpyCH4IV ACGT 4 cut(s) 498, 812, 1116, 1148
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 831, 941
HpyF3I CTNAG 7 cut(s) 228, 316, 430, 518, 599, 984, 1280
HpySE526I ACGT 4 cut(s) 498, 812, 1116, 1148
Hsp92II CATG 8 cut(s) 461, 547, 559, 893, 910, 1087, 1233, 1339
HspAI GCGC 1 cut(s) 938
Kzo9I GATC 2 cut(s) 129, 1198
LmnI GCTCC 2 cut(s) 802, 988
Lsp1109I GCAGC 2 cut(s) 922, 1268
LweI GCATC 4 cut(s) 265, 443, 668, 713
MabI ACCWGGT 1 cut(s) 1290
MaeI CTAG 4 cut(s) 149, 254, 504, 1098
MaeII ACGT 4 cut(s) 498, 812, 1116, 1148
MaeIII GTNAC 5 cut(s) 100, 139, 923, 1072, 1294
MalI GATC 2 cut(s) 131, 1200
MbiI CCGCTC 1 cut(s) 805
MboI GATC 2 cut(s) 129, 1198
MboII GAAGA 7 cut(s) 532, 662, 785, 959, 1046, 1083, 1177
MhlI GDGCHC 2 cut(s) 91, 1316
MlsI TGGCCA 1 cut(s) 897
MluCI AATT 5 cut(s) 6, 119, 864, 902, 1217
MluNI TGGCCA 1 cut(s) 897
MlyI GAGTC 2 cut(s) 308, 1264
Mox20I TGGCCA 1 cut(s) 897
Mph1103I ATGCAT 1 cut(s) 1109
MscI TGGCCA 1 cut(s) 897
MseI TTAA 7 cut(s) 479, 632, 762, 783, 816, 1223, 1319
MslI CAYNNNNRTG 1 cut(s) 1334
Msp20I TGGCCA 1 cut(s) 897
MspA1I CMGCKG 1 cut(s) 1259
MspCI CTTAAG 1 cut(s) 1222
MspR9I CCNGG 2 cut(s) 1044, 1292
MvaI CCWGG 2 cut(s) 1044, 1292
MwoI GCNNNNNNNGC 3 cut(s) 431, 831, 941
NcoI CCATGG 1 cut(s) 1083
NdeI CATATG 2 cut(s) 60, 658
NdeII GATC 2 cut(s) 129, 1198
NlaIII CATG 8 cut(s) 461, 547, 559, 893, 910, 1087, 1233, 1339
NmuCI GTSAC 1 cut(s) 923
NsiI ATGCAT 1 cut(s) 1109
NspI RCATGY 2 cut(s) 461, 893
PaeR7I CTCGAG 1 cut(s) 1309
PciI ACATGT 1 cut(s) 889
PfeI GAWTC 8 cut(s) 108, 185, 217, 328, 340, 595, 1132, 1206
PkrI GCNGC 2 cut(s) 937, 1258
Ple19I CGATCG 1 cut(s) 132
PleI GAGTC 2 cut(s) 308, 1264
PpsI GAGTC 2 cut(s) 308, 1264
PscI ACATGT 1 cut(s) 889
Psp1406I AACGTT 2 cut(s) 498, 1116
Psp6I CCWGG 2 cut(s) 1042, 1290
PspFI CCCAGC 1 cut(s) 1259
PspGI CCWGG 2 cut(s) 1042, 1290
PspXI VCTCGAGB 1 cut(s) 1309
PstI CTGCAG 1 cut(s) 574
PstNI CAGNNNCTG 1 cut(s) 927
PvuI CGATCG 1 cut(s) 132
PvuII CAGCTG 1 cut(s) 1259
RsaI GTAC 1 cut(s) 563
RsaNI GTAC 1 cut(s) 562
RseI CAYNNNNRTG 1 cut(s) 1334
SaqAI TTAA 7 cut(s) 479, 632, 762, 783, 816, 1223, 1319
SatI GCNGC 2 cut(s) 936, 1257
Sau3AI GATC 2 cut(s) 129, 1198
SchI GAGTC 2 cut(s) 308, 1264
ScrFI CCNGG 2 cut(s) 1044, 1292
SduI GDGCHC 2 cut(s) 91, 1316
SexAI ACCWGGT 1 cut(s) 1290
SfaNI GCATC 4 cut(s) 265, 443, 668, 713
SfcI CTRYAG 2 cut(s) 463, 570
Sfr274I CTCGAG 1 cut(s) 1309
SlaI CTCGAG 1 cut(s) 1309
SmiMI CAYNNNNRTG 1 cut(s) 1334
SmlI CTYRAG 4 cut(s) 212, 483, 1222, 1309
SmoI CTYRAG 4 cut(s) 212, 483, 1222, 1309
Sse9I AATT 5 cut(s) 6, 119, 864, 902, 1217
SsiI CCGC 2 cut(s) 681, 805
SspI AATATT 1 cut(s) 1238
SspMI CTAG 4 cut(s) 149, 254, 504, 1098
StyD4I CCNGG 2 cut(s) 1042, 1290
StyI CCWWGG 1 cut(s) 1083
TaaI ACNGT 3 cut(s) 224, 929, 1253
TaiI ACGT 4 cut(s) 501, 815, 1119, 1151
TaqI TCGA 8 cut(s) 91, 128, 306, 490, 636, 1209, 1245, 1310
TaqII GACCGA 1 cut(s) 524
TasI AATT 5 cut(s) 6, 119, 864, 902, 1217
TatI WGTACW 1 cut(s) 561
TfiI GAWTC 8 cut(s) 108, 185, 217, 328, 340, 595, 1132, 1206
Tru1I TTAA 7 cut(s) 479, 632, 762, 783, 816, 1223, 1319
Tru9I TTAA 7 cut(s) 479, 632, 762, 783, 816, 1223, 1319
TscAI CASTG 3 cut(s) 417, 739, 932
TseFI GTSAC 1 cut(s) 923
TseI GCWGC 2 cut(s) 935, 1256
Tsp45I GTSAC 1 cut(s) 923
TspDTI ATGAA 7 cut(s) 112, 157, 198, 532, 895, 1012, 1124
TspGWI ACGGA 1 cut(s) 1043
TspRI CASTG 3 cut(s) 417, 739, 932
Vha464I CTTAAG 1 cut(s) 1222
XapI RAATTY 2 cut(s) 902, 1217
XceI RCATGY 2 cut(s) 461, 893
XhoI CTCGAG 1 cut(s) 1309
XmiI GTMKAC 1 cut(s) 466
XspI CTAG 4 cut(s) 149, 254, 504, 1098
Zsp2I ATGCAT 1 cut(s) 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.