Rh1DG071500

Mycolic acid cyclopropane synthetase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000555
Physical Location & Seq
Forward (+)
12911326 .. 12912141
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG071500.1

Sequence Viewer

Length: 318 bp
ATGGCTCTTTCATTGACGGAAACAACAACACGCCTATTTGTTACTAGATTTCTTAGACAATATATATCTACTGGATGTTTAATCTTATTAGAAGAGGGAGGCACAATATTCAACTTTGAGGGAAGCAAAAAGGACTGTTCTCTAAAATCCGTTCTCAAAGTTCATAGTCCTCAGTTTTACTGGAAAGTAATGACACAGGCTGATCTAGGCATTGCAGATGCATATATCAGTGGAGATTTTTCTTTTGATGATAAAGACCGAGGTCTTCTAAATCTTTTTATGCTTCTTCTTGCCAACGGAGATTCTAATCACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase CMAS NAD_binding_8

Protein Analysis

105

Amino Acids

11.85

Weight (kDa)

5.54

Isoelectric Point (pI)

23.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica MD16G1224400.v1.1
prunus_persica Prupe.1G045800_v2.0.a1
pyrus_communis pycom16g18780
rosa_chinensis RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 257
BfaI CTAG 3 cut(s) 45, 206, 316
BmsI GCATC 1 cut(s) 208
BoxI GACNNNNGTC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 76, 185
Bse3DI GCAATG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 80
BseJI GATNNNNATC 1 cut(s) 306
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 2 cut(s) 76, 185
Bsp143I GATC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 210
BsrI ACTGG 2 cut(s) 76, 185
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 53, 171
BstF5I GGATG 1 cut(s) 80
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstPAI GACNNNNGTC 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 235
CviJI RGCY 2 cut(s) 5, 200
CviKI_1 RGCY 2 cut(s) 5, 200
DdeI CTNAG 2 cut(s) 53, 171
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 223
FaiI YATR 6 cut(s) 63, 65, 165, 223, 225, 281
FokI GGATG 1 cut(s) 87
FspBI CTAG 3 cut(s) 45, 206, 316
HinfI GANTC 1 cut(s) 302
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 215, 221
HpyF3I CTNAG 2 cut(s) 53, 171
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 3 cut(s) 57, 166, 182
LweI GCATC 1 cut(s) 208
MaeI CTAG 3 cut(s) 45, 206, 316
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 3 cut(s) 104, 257, 278
MnlI CCTC 5 cut(s) 88, 92, 112, 180, 254
Mph1103I ATGCAT 1 cut(s) 223
MseI TTAA 1 cut(s) 80
NdeII GATC 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 223
PfeI GAWTC 1 cut(s) 302
PshAI GACNNNNGTC 1 cut(s) 261
SaqAI TTAA 1 cut(s) 80
Sau3AI GATC 1 cut(s) 202
SetI ASST 1 cut(s) 265
SfaNI GCATC 1 cut(s) 208
SgeI CNNG 8 cut(s) 42, 57, 84, 193, 209, 218, 272, 302
SspI AATATT 1 cut(s) 108
SspMI CTAG 3 cut(s) 45, 206, 316
TaaI ACNGT 1 cut(s) 137
TaqII GACCGA 1 cut(s) 273
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 3 cut(s) 32, 139, 312
TspRI CASTG 1 cut(s) 235
XspI CTAG 3 cut(s) 45, 206, 316
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.