Rh4DG051800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000555
Physical Location & Seq
Reverse (-)
8170085 .. 8183003
12919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG051800.1

Sequence Viewer

Length: 2469 bp
ATGAAAGTTGCAGTGATTGGTTCTGGTATTAGTGGTTTGGTCTCAGCCTATGTTCTTGCAAAAGAATGCGTTGAAGTGGTTCTATATGAGAAAAAAGACTACCTGGGTGGCCATGCCAGGACTGTCACATATGATGGTGTTGATTTGGACCTTGGTTTCATGGTCTTCAATCATGTAATGTATCCAAATATGATGGAGTTCTTTGAGAGCCTTGGAGTTGATATGGAGACATGCAACATGTCCTTCTCAGTGAGTTTAGATAAAGGACGGGGCTGTGAATGGGGTAGTCAAAATAGTCTCTCAAGCCTGTTTGCAGAAAAGAAGAACTTGTTCAACCCATACTTCTGGAAAATGCTTCGAGAAATCACCAAGTTTAAACATGATTTGATCAGTTATCTTGAGGTGCTTGAGGGTAACCCAGACATTGACCGGAATGAAACCTTGGGGCAGTTTATTGAATCACATCACTACTCTGAACTATTTCTGAAGGCTTACCTTATTCCAATATGTAGTTCAATCTTGTGGTGTCCTTCAGAAGGGGTTATGAGCTTCTCAGCTTTCTCTGTGCTTTCAGTTTGTCGCAATCATCATCTACTTCAGCTATTTGGCGGCCCACAGTGGCTTACCGTCAAACGGGGTTCACATTGTTATGTGAAGAAGGTGAAAGAAGTGTTGGAGAGTAAAGGGTGTCAGATAAGAACCGGCTCTGAGGTGCATAAAGTTTCCACAACTGATGAGGGTTGCAGTGTTTTTACTGGAGATGGTATTGAGGAAATTTACAATGGATGCATAATAGCTATCCATGCCCCTGATGCCATGAGAATATTAGGGGAACAGGCAACATCTGATGAACTGAGAATACTTGGCGCCTTCCAATATGTGTACTGTGATATTTTCCTTCATCGTGACAAAACTTTAATGCCCCAAAACCTAGCAGCATGGAGTGCATTGAACTATCTTGGAAGTACTGACAACAAAGTATGTTTGACATACTGGCTTAATCAGCTTCAGAACCTCAGCGAAACAAGTCAACCATATCTTGTGACACTCAATCCAGATCATACACCAAACCACACCTTGCTTAAGTGGTCAACAAGCCATCCAGTCCTATCTGTTGCTGCATCAAAAGCTTCACTGGAGCTTCCTCATATTCAAGGAAAGAGAGGAATTTGGTTTTGTGGAGCATACCAGGGTTATGGCTTCCATGAGGATGGGCTAAAGGCTGGAATGGCTGCAGCACATGGTATGCTTGGAAAAGGTTGTGCCCTATTGGGAAACCCAAAACATATGGCTTTTTCAATGACGGAAACAGCGGCACGCCTGTTTGTTACTAGATTTCTTAGACATTATATATCTACCGGATGTTTAATTTTATTAGAAGAAGGAGGCTCGATGTTCACCTTTGAGGGAAGCAGAAAGGACTGTTCTCTAAAATCCGTTCTTAAAGTTCACTGTCCTCAGTTTTACTGGAAAGTAATGACACAGGCTGATCTAGGCATTGCAGATGCATATATCAGTGGCGATTTTTCTTTTGATGATAAAGACCGAGGTCTTCTAAATCTTTTTATGCTTCTCATTGCCAACGGAGATTCTAATGCCTCAAAATCAAACAAGAAAAGGGGATGGTGGCAGCCTTTGTTTTTCACAGCCACTATAGCCTCAGCCAAATATTTCTTTCAGCATGCTTTAAGGCAAAATAGTCTTACACAGGCTCGAAGGAACATATCTCGTCATTATGATCTGGCAAGAATCGATGAGAACCATCAGGTTCTAGATATTGGTTGTGGCTGGGGAACCTTAGCTATTGAAGCAGTCAAACAAACGGGCTGCAGATACACTGGCATCACTCTATCTGAGGAACAACTTAAATTTGCTGAAAAGAAAGTGAAAGATGCTGGACTTCAGCACCGGATCAAGTTCCTTCTGTGTGACTACCGCCAATTGCCTTCTTACCACAAATATGACAGAATCATATCTTGCGAGATGCTAGAACATGTCGGTCATGAATTTGTGGATGAGTTCTTTTCTTGCTGTGAGTCTGTACTGGCAAAAAATGGGCTTTTTATACTCCAGTTCATATCCACACCGGATGAACGCTATGATGACTACAGGCGAAGTTCAGACTTCATAAAGGAGTATATATTTCCTGGTGCATGTGTACCTTCATTGAGTAGGGTAACATCAGCCATGGCCGCTTCTTCCAAACTCTGTGTGGAGCACATGGAAAACATTGGAATTCATTATTACCAAACACTAAGATGTTGGAGAAAGAATTTCTTAGAGAGACAGAGTGAAATACTTGCTCTTGGATTCAATGAAAATTTCATTCGGACCTGGGAATATTATTTTGATTATTGCGCTGCTGGTTTCAAGTCATATACACTTGGAAATTACCAGATTGTGTTTTCACGTCCTCGTAATGCTCTCACATTCAACAATCCATATAAGGGTTTCCCTTCAGCATATTGA

Protein Analysis

822

Amino Acids

93.29

Weight (kDa)

6.85

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_8 PF13450 5 - 71 6.2e-16 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 10 - 272 1e-18 Flavin containing amine oxidoreductase
CMAS PF02353 564 - 796 1.9e-58 Mycolic acid cyclopropane synthetase
Methyltransf_23 PF13489 581 - 697 6.9e-10 Methyltransferase domain
Methyltransf_31 PF13847 585 - 698 3.4e-14 Methyltransferase domain
MTS PF05175 586 - 688 9e-07 Methyltransferase small domain
Methyltransf_25 PF13649 590 - 686 2e-17 Methyltransferase domain
Methyltransf_11 PF08241 591 - 690 2.2e-14 Methyltransferase domain
Methyltransf_12 PF08242 591 - 688 2.6e-12 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica MD16G1224400.v1.1
prunus_persica Prupe.1G045800_v2.0.a1
pyrus_communis pycom16g18780
rosa_chinensis RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 866
AciI CCGC 4 cut(s) 609, 1313, 1936, 2193
AclWI GGATC 1 cut(s) 1919
AcoI YGGCCR 2 cut(s) 109, 2190
AcsI RAATTY 7 cut(s) 774, 1167, 1868, 2006, 2235, 2272, 2320
AcuI CTGAAG 6 cut(s) 506, 516, 581, 992, 1886, 2442
AcyI GRCGYC 1 cut(s) 867
AfaI GTAC 4 cut(s) 884, 967, 2043, 2160
AfiI CCNNNNNNNGG 3 cut(s) 536, 633, 2447
AflII CTTAAG 1 cut(s) 1082
AflIII ACRYGT 2 cut(s) 237, 1993
AjiI CACGTC 1 cut(s) 2411
AjnI CCWGG 5 cut(s) 102, 116, 1188, 2146, 2333
AjuI GAANNNNNNNTTGG 6 cut(s) 425, 457, 496, 528, 656, 688
AluBI AGCT 8 cut(s) 549, 557, 601, 797, 1006, 1130, 1141, 1802
AluI AGCT 8 cut(s) 549, 557, 601, 797, 1006, 1130, 1141, 1802
Alw21I GWGCWC 1 cut(s) 2220
Alw26I GTCTC 4 cut(s) 46, 221, 302, 2278
AlwI GGATC 1 cut(s) 1919
AoxI GGCC 3 cut(s) 109, 610, 2190
ApeKI GCWGC 7 cut(s) 935, 1118, 1232, 1235, 1630, 1827, 2360
ApoI RAATTY 7 cut(s) 774, 1167, 1868, 2006, 2235, 2272, 2320
Asp700I GAANNNNTTC 3 cut(s) 78, 329, 480
AspLEI GCGC 2 cut(s) 869, 2360
AspS9I GGNCC 3 cut(s) 148, 611, 2331
AsuHPI GGTGA 3 cut(s) 358, 673, 1390
AvaII GGWCC 2 cut(s) 148, 2331
BaeGI GKGCMC 1 cut(s) 1267
BalI TGGCCA 1 cut(s) 111
BanI GGYRCC 1 cut(s) 866
BbsI GAAGAC 2 cut(s) 157, 1544
Bbv12I GWGCWC 1 cut(s) 2220
BbvCI CCTCAGC 2 cut(s) 1016, 1660
BbvI GCAGC 7 cut(s) 947, 1105, 1219, 1247, 1642, 1814, 2347
BccI CCATC 7 cut(s) 128, 187, 755, 1107, 1205, 1617, 1770
BciT130I CCWGG 5 cut(s) 104, 118, 1190, 2148, 2335
BciVI GTATCC 1 cut(s) 192
BclI TGATCA 1 cut(s) 387
BcoDI GTCTC 4 cut(s) 46, 221, 302, 2278
BfaI CTAG 5 cut(s) 932, 1332, 1493, 1772, 1988
BfmI CTRYAG 4 cut(s) 1233, 1653, 1828, 2107
BfoI RGCGCY 1 cut(s) 870
BfrI CTTAAG 1 cut(s) 1082
BfuI GTATCC 1 cut(s) 192
BmcAI AGTACT 1 cut(s) 967
Bme1390I CCNGG 5 cut(s) 104, 118, 1190, 2148, 2335
Bme18I GGWCC 2 cut(s) 148, 2331
BmgBI CACGTC 1 cut(s) 2411
BmgT120I GGNCC 3 cut(s) 148, 611, 2331
BmiI GGNNCC 2 cut(s) 868, 1795
BmrFI CCNGG 5 cut(s) 104, 118, 1190, 2148, 2335
BmsI GCATC 7 cut(s) 776, 802, 1130, 1495, 1851, 1882, 1974
BoxI GACNNNNGTC 1 cut(s) 1548
BpiI GAAGAC 2 cut(s) 157, 1544
BpmI CTGGAG 3 cut(s) 777, 1157, 2054
Bpu10I CCTNAGC 3 cut(s) 1016, 1660, 1798
BpuEI CTTGAG 3 cut(s) 286, 419, 428
Bsa29I ATCGAT 1 cut(s) 1752
BsaHI GRCGYC 1 cut(s) 867
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 8 cut(s) 103, 151, 211, 441, 1189, 1546, 2187, 2334
BsaWI WCCGGW 4 cut(s) 429, 1358, 1908, 2086
Bsc4I CCNNNNNNNGG 3 cut(s) 536, 633, 2447
Bse118I RCCGGY 1 cut(s) 701
Bse1I ACTGG 8 cut(s) 760, 998, 1103, 1140, 1472, 1843, 2049, 2071
Bse3DI GCAATG 2 cut(s) 1497, 1575
BseBI CCWGG 5 cut(s) 104, 118, 1190, 2148, 2335
BseCI ATCGAT 1 cut(s) 1752
BseDI CCNNGG 8 cut(s) 103, 151, 211, 441, 1189, 1546, 2187, 2334
BseGI GGATG 7 cut(s) 791, 1099, 1216, 1367, 1628, 2020, 2095
BseLI CCNNNNNNNGG 3 cut(s) 536, 633, 2447
BseMI GCAATG 2 cut(s) 1497, 1575
BseMII CTCAG 9 cut(s) 57, 261, 567, 699, 845, 1030, 1472, 1674, 1845
BseNI ACTGG 8 cut(s) 760, 998, 1103, 1140, 1472, 1843, 2049, 2071
BseSI GKGCMC 1 cut(s) 1267
BseXI GCAGC 7 cut(s) 947, 1105, 1219, 1247, 1642, 1814, 2347
BseYI CCCAGC 1 cut(s) 1788
BshFI GGCC 3 cut(s) 111, 612, 2192
BshNI GGYRCC 1 cut(s) 866
BshVI ATCGAT 1 cut(s) 1752
BsiHKAI GWGCWC 1 cut(s) 2220
BsiSI CCGG 5 cut(s) 430, 702, 1359, 1909, 2087
BslI CCNNNNNNNGG 3 cut(s) 536, 633, 2447
BsmAI GTCTC 4 cut(s) 46, 221, 302, 2278
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 3 cut(s) 111, 612, 2192
Bso31I GGTCTC 1 cut(s) 46
Bsp1286I GDGCHC 2 cut(s) 1267, 2220
Bsp143I GATC 5 cut(s) 387, 1057, 1489, 1738, 1911
Bsp19I CCATGG 1 cut(s) 2187
BspACI CCGC 4 cut(s) 609, 1313, 1936, 2193
BspANI GGCC 3 cut(s) 111, 612, 2192
BspCNI CTCAG 9 cut(s) 56, 260, 566, 700, 846, 1029, 1471, 1673, 1846
BspDI ATCGAT 1 cut(s) 1752
BspHI TCATGA 1 cut(s) 2002
BspLI GGNNCC 2 cut(s) 868, 1795
BspMAI CTGCAG 2 cut(s) 1237, 1832
BspPI GGATC 1 cut(s) 1919
BspT107I GGYRCC 1 cut(s) 866
BspTI CTTAAG 1 cut(s) 1082
BspTNI GGTCTC 1 cut(s) 46
BsrDI GCAATG 2 cut(s) 1497, 1575
BsrFI RCCGGY 1 cut(s) 701
BsrI ACTGG 8 cut(s) 760, 998, 1103, 1140, 1472, 1843, 2049, 2071
BssAI RCCGGY 1 cut(s) 701
BssECI CCNNGG 8 cut(s) 103, 151, 211, 441, 1189, 1546, 2187, 2334
BssMI GATC 5 cut(s) 387, 1057, 1489, 1738, 1911
BssNI GRCGYC 1 cut(s) 867
BssT1I CCWWGG 4 cut(s) 151, 211, 441, 2187
Bst2UI CCWGG 5 cut(s) 104, 118, 1190, 2148, 2335
Bst4CI ACNGT 6 cut(s) 124, 618, 628, 887, 1424, 1454
BstACI GRCGYC 1 cut(s) 867
BstAFI CTTAAG 1 cut(s) 1082
BstAPI GCANNNNNTGC 1 cut(s) 944
BstC8I GCNNGC 2 cut(s) 1318, 1683
BstDSI CCRYGG 1 cut(s) 2187
BstEII GGTNACC 1 cut(s) 413
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 7 cut(s) 791, 1099, 1216, 1367, 1628, 2020, 2095
BstH2I RGCGCY 1 cut(s) 870
BstHHI GCGC 2 cut(s) 869, 2360
BstKTI GATC 5 cut(s) 390, 1060, 1492, 1741, 1914
BstMAI GTCTC 4 cut(s) 46, 221, 302, 2278
BstMBI GATC 5 cut(s) 387, 1057, 1489, 1738, 1911
BstMWI GCNNNNNNNGC 9 cut(s) 803, 812, 944, 1003, 1127, 1229, 1655, 1808, 2192
BstNI CCWGG 5 cut(s) 104, 118, 1190, 2148, 2335
BstNSI RCATGY 5 cut(s) 234, 241, 1685, 1997, 2157
BstPAI GACNNNNGTC 1 cut(s) 1548
BstPI GGTNACC 1 cut(s) 413
BstSCI CCNGG 5 cut(s) 102, 116, 1188, 2146, 2333
BstSFI CTRYAG 4 cut(s) 1233, 1653, 1828, 2107
BstSLI GKGCMC 1 cut(s) 1267
BstV1I GCAGC 7 cut(s) 947, 1105, 1219, 1247, 1642, 1814, 2347
BstV2I GAAGAC 2 cut(s) 157, 1544
BstXI CCANNNNNNTGG 3 cut(s) 345, 1196, 1211
Bsu15I ATCGAT 1 cut(s) 1752
BsuI GTATCC 1 cut(s) 192
BsuRI GGCC 3 cut(s) 111, 612, 2192
BsuTUI ATCGAT 1 cut(s) 1752
BtgI CCRYGG 1 cut(s) 2187
BtrI CACGTC 1 cut(s) 2411
BtsCI GGATG 7 cut(s) 791, 1099, 1216, 1367, 1628, 2020, 2095
BtsI GCAGTG 2 cut(s) 18, 751
BtsIMutI CAGTG 8 cut(s) 18, 255, 623, 751, 1133, 1450, 1522, 1836
Cac8I GCNNGC 2 cut(s) 1318, 1683
CciI TCATGA 1 cut(s) 2002
CfoI GCGC 2 cut(s) 869, 2360
Cfr10I RCCGGY 1 cut(s) 701
Cfr13I GGNCC 3 cut(s) 148, 611, 2331
ClaI ATCGAT 1 cut(s) 1752
Csp6I GTAC 4 cut(s) 883, 966, 2042, 2159
CviQI GTAC 4 cut(s) 883, 966, 2042, 2159
DinI GGCGCC 1 cut(s) 868
DpnI GATC 5 cut(s) 389, 1059, 1491, 1740, 1913
DpnII GATC 5 cut(s) 387, 1057, 1489, 1738, 1911
DraI TTTAAA 1 cut(s) 376
EaeI YGGCCR 2 cut(s) 109, 2190
Eco130I CCWWGG 4 cut(s) 151, 211, 441, 2187
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 2 cut(s) 148, 2331
Eco57I CTGAAG 6 cut(s) 506, 516, 581, 992, 1886, 2442
Eco91I GGTNACC 1 cut(s) 413
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoO65I GGTNACC 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 2235
EcoRII CCWGG 5 cut(s) 102, 116, 1188, 2146, 2333
EcoT14I CCWWGG 4 cut(s) 151, 211, 441, 2187
EcoT22I ATGCAT 2 cut(s) 791, 1510
EgeI GGCGCC 1 cut(s) 868
EheI GGCGCC 1 cut(s) 868
ErhI CCWWGG 4 cut(s) 151, 211, 441, 2187
FalI AAGNNNNNCTT 4 cut(s) 311, 343, 2261, 2293
FauNDI CATATG 2 cut(s) 130, 1287
FbaI TGATCA 1 cut(s) 387
FokI GGATG 7 cut(s) 798, 1086, 1223, 1374, 1635, 2027, 2102
FspBI CTAG 5 cut(s) 932, 1332, 1493, 1772, 1988
GlaI GCGC 2 cut(s) 868, 2359
GsaI CCCAGC 1 cut(s) 1792
GsuI CTGGAG 3 cut(s) 777, 1157, 2054
HaeII RGCGCY 1 cut(s) 870
HaeIII GGCC 3 cut(s) 111, 612, 2192
HapII CCGG 5 cut(s) 430, 702, 1359, 1909, 2087
HhaI GCGC 2 cut(s) 869, 2360
Hin1I GRCGYC 1 cut(s) 867
Hin6I GCGC 2 cut(s) 867, 2358
HinP1I GCGC 2 cut(s) 867, 2358
HincII GTYRAC 2 cut(s) 1031, 1092
HindII GTYRAC 2 cut(s) 1031, 1092
HindIII AAGCTT 1 cut(s) 1128
HinfI GANTC 6 cut(s) 458, 1589, 1749, 1968, 2036, 2310
HpaII CCGG 5 cut(s) 430, 702, 1359, 1909, 2087
HphI GGTGA 3 cut(s) 358, 673, 1390
Hpy166II GTNNAC 7 cut(s) 641, 883, 1031, 1092, 1398, 1450, 2159
Hpy188III TCNNGA 7 cut(s) 346, 359, 398, 905, 1055, 1772, 2003
Hpy8I GTNNAC 7 cut(s) 641, 883, 1031, 1092, 1398, 1450, 2159
HpyCH4III ACNGT 6 cut(s) 124, 618, 628, 887, 1424, 1454
HpyCH4IV ACGT 1 cut(s) 2410
HpyF10VI GCNNNNNNNGC 9 cut(s) 803, 812, 944, 1003, 1127, 1229, 1655, 1808, 2192
HpySE526I ACGT 1 cut(s) 2410
Hsp92I GRCGYC 1 cut(s) 867
HspAI GCGC 2 cut(s) 867, 2358
KasI GGCGCC 1 cut(s) 866
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 5 cut(s) 387, 1057, 1489, 1738, 1911
LmnI GCTCC 3 cut(s) 1138, 1181, 2215
Lsp1109I GCAGC 7 cut(s) 947, 1105, 1219, 1247, 1642, 1814, 2347
LweI GCATC 7 cut(s) 776, 802, 1130, 1495, 1851, 1882, 1974
MaeI CTAG 5 cut(s) 932, 1332, 1493, 1772, 1988
MaeII ACGT 1 cut(s) 2410
MaeIII GTNAC 7 cut(s) 124, 413, 905, 1042, 1327, 1928, 2176
MalI GATC 5 cut(s) 389, 1059, 1491, 1740, 1913
MboI GATC 5 cut(s) 387, 1057, 1489, 1738, 1911
MboII GAAGA 6 cut(s) 157, 334, 667, 1391, 1544, 2190
MfeI CAATTG 1 cut(s) 1940
MhlI GDGCHC 2 cut(s) 1267, 2220
MlsI TGGCCA 1 cut(s) 111
MluNI TGGCCA 1 cut(s) 111
Mly113I GGCGCC 1 cut(s) 867
MlyI GAGTC 1 cut(s) 2045
MmeI TCCRAC 2 cut(s) 654, 2243
Mox20I TGGCCA 1 cut(s) 111
Mph1103I ATGCAT 2 cut(s) 791, 1510
MroXI GAANNNNTTC 3 cut(s) 78, 329, 480
MscI TGGCCA 1 cut(s) 111
MseI TTAA 8 cut(s) 375, 917, 999, 1083, 1367, 1443, 1688, 1866
MslI CAYNNNNRTG 4 cut(s) 648, 1209, 1959, 2257
Msp20I TGGCCA 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 1313
MspCI CTTAAG 1 cut(s) 1082
MspI CCGG 5 cut(s) 430, 702, 1359, 1909, 2087
MspR9I CCNGG 5 cut(s) 104, 118, 1190, 2148, 2335
MssI GTTTAAAC 1 cut(s) 376
MunI CAATTG 1 cut(s) 1940
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 5 cut(s) 104, 118, 1190, 2148, 2335
MwoI GCNNNNNNNGC 9 cut(s) 803, 812, 944, 1003, 1127, 1229, 1655, 1808, 2192
NarI GGCGCC 1 cut(s) 867
NcoI CCATGG 1 cut(s) 2187
NdeI CATATG 2 cut(s) 130, 1287
NdeII GATC 5 cut(s) 387, 1057, 1489, 1738, 1911
NlaIV GGNNCC 2 cut(s) 868, 1795
NmuCI GTSAC 4 cut(s) 124, 905, 1042, 1928
NsiI ATGCAT 2 cut(s) 791, 1510
NspI RCATGY 5 cut(s) 234, 241, 1685, 1997, 2157
PaeI GCATGC 1 cut(s) 1685
PagI TCATGA 1 cut(s) 2002
PciI ACATGT 2 cut(s) 237, 1993
PctI GAATGC 1 cut(s) 71
PdmI GAANNNNTTC 3 cut(s) 78, 329, 480
PfeI GAWTC 5 cut(s) 458, 1589, 1749, 1968, 2310
PleI GAGTC 1 cut(s) 2044
PluTI GGCGCC 1 cut(s) 870
PmeI GTTTAAAC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 2044
PscI ACATGT 2 cut(s) 237, 1993
PshAI GACNNNNGTC 1 cut(s) 1548
Psp6I CCWGG 5 cut(s) 102, 116, 1188, 2146, 2333
PspEI GGTNACC 1 cut(s) 413
PspFI CCCAGC 1 cut(s) 1788
PspGI CCWGG 5 cut(s) 102, 116, 1188, 2146, 2333
PspN4I GGNNCC 2 cut(s) 868, 1795
PspPI GGNCC 3 cut(s) 148, 611, 2331
PsrI GAACNNNNNNTAC 2 cut(s) 843, 875
PstI CTGCAG 2 cut(s) 1237, 1832
RsaI GTAC 4 cut(s) 884, 967, 2043, 2160
RsaNI GTAC 4 cut(s) 883, 966, 2042, 2159
RseI CAYNNNNRTG 4 cut(s) 648, 1209, 1959, 2257
SaqAI TTAA 8 cut(s) 375, 917, 999, 1083, 1367, 1443, 1688, 1866
Sau3AI GATC 5 cut(s) 387, 1057, 1489, 1738, 1911
Sau96I GGNCC 3 cut(s) 148, 611, 2331
ScaI AGTACT 1 cut(s) 967
SchI GAGTC 1 cut(s) 2045
ScrFI CCNGG 5 cut(s) 104, 118, 1190, 2148, 2335
SduI GDGCHC 2 cut(s) 1267, 2220
SfaNI GCATC 7 cut(s) 776, 802, 1130, 1495, 1851, 1882, 1974
SfcI CTRYAG 4 cut(s) 1233, 1653, 1828, 2107
SfoI GGCGCC 1 cut(s) 868
SinI GGWCC 2 cut(s) 148, 2331
SmiMI CAYNNNNRTG 4 cut(s) 648, 1209, 1959, 2257
SmlI CTYRAG 4 cut(s) 301, 398, 407, 1082
SmoI CTYRAG 4 cut(s) 301, 398, 407, 1082
SphI GCATGC 1 cut(s) 1685
SsiI CCGC 4 cut(s) 609, 1313, 1936, 2193
SspDI GGCGCC 1 cut(s) 866
SspI AATATT 3 cut(s) 825, 1670, 2342
SspMI CTAG 5 cut(s) 932, 1332, 1493, 1772, 1988
StyD4I CCNGG 5 cut(s) 102, 116, 1188, 2146, 2333
StyI CCWWGG 4 cut(s) 151, 211, 441, 2187
TaaI ACNGT 6 cut(s) 124, 618, 628, 887, 1424, 1454
TaiI ACGT 1 cut(s) 2413
TaqI TCGA 4 cut(s) 358, 1391, 1714, 1752
TaqII GACCGA 2 cut(s) 1560, 1988
TatI WGTACW 3 cut(s) 882, 965, 2041
TauI GCSGC 3 cut(s) 612, 1316, 2195
TfiI GAWTC 5 cut(s) 458, 1589, 1749, 1968, 2310
Tru1I TTAA 8 cut(s) 375, 917, 999, 1083, 1367, 1443, 1688, 1866
Tru9I TTAA 8 cut(s) 375, 917, 999, 1083, 1367, 1443, 1688, 1866
TscAI CASTG 8 cut(s) 18, 255, 623, 751, 1140, 1457, 1522, 1843
TseFI GTSAC 4 cut(s) 124, 905, 1042, 1928
TseI GCWGC 7 cut(s) 935, 1118, 1232, 1235, 1630, 1827, 2360
Tsp45I GTSAC 4 cut(s) 124, 905, 1042, 1928
TspGWI ACGGA 3 cut(s) 1319, 1426, 1599
TspRI CASTG 8 cut(s) 18, 255, 623, 751, 1140, 1457, 1522, 1843
Vha464I CTTAAG 1 cut(s) 1082
VpaK11BI GGWCC 2 cut(s) 148, 2331
XagI CCTNNNNNAGG 1 cut(s) 534
XapI RAATTY 7 cut(s) 774, 1167, 1868, 2006, 2235, 2272, 2320
XbaI TCTAGA 1 cut(s) 1771
XceI RCATGY 5 cut(s) 234, 241, 1685, 1997, 2157
XcmI CCANNNNNNNNNTGG 1 cut(s) 2209
XmnI GAANNNNTTC 3 cut(s) 78, 329, 480
XspI CTAG 5 cut(s) 932, 1332, 1493, 1772, 1988
ZrmI AGTACT 1 cut(s) 967
Zsp2I ATGCAT 2 cut(s) 791, 1510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.