Rh1DG299400

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000555
Physical Location & Seq
Forward (+)
52514192 .. 52533372
19181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG299400.1

Sequence Viewer

Length: 1152 bp
ATGGCTGCAGCAAGTGGTGTGCTTGGAAAAGGTTGTGCGCTCTTGGAGAAGGTCGCACGCCTATATGTTACTAGATTTCTGAGACAGTATATCTCTACAGGATGTTTAGTCTTATTAGAAGAAAGAATGGTGCAAACCTTTGAGGGAAGCAATAAAGGCTGTTCTTTGAAATCTGTTATTAAAGTTCATAACCCCGTTCAATTTTACTGGAAGGTAATGACACGAGCAGATTTAGGCCTTGCAGATGCATATATCAATGGCGATTTTTCTTTTGATGATAAAGACAAAGGTCTTGAGAATCTCTTAATGATTCTCATTGCCAACAGAGATTCAAATTGTTCCCTCTCAAAAATGAATAAGAAAAGAGGAAGGTGGATGCCTTTGTTAAAGGAAGCTTGTTTAGCCCCAGCAAGATATCTCTTTCATCACGTTTCAAGGCAAAACTCTCTTACAGAGGCTCGAAGGAACATCTCTCACCATTATGATCTGAGTAATGAATTTTTTTCGCTGTTCATGGACGAAACAATGATGTATTCCGCTGCTGTATTTAAGAAAGAAGATGAAGAGTTGAAGACTGCACAGCTAAGGAAAATCAGTATTCTCATTGAAAAGGCTAGAATTACTAAGAACCATGAAGTCCTAGAGTTGGGCTGTGGTTGGGGAGGCTTCGCCATTGAAGTCGTCAAGCAAACCGGTTGTAGATACACTGGCATAACTTTGTCGAAGGAACAAGTGCAATTTTCTGAAAAGAAAGTGAAAGATGCTGGCCTTCAGGAAAGCATCAAAATTATGCTGCGTGACTACCGCGAATTGCCTCAGAACTACAAATATGACAGAATTATTTGTTGTGAGATGCTAGAACATGTCGGCCATGAATTTATGGAGGAATTCTTTGCTTGTTGTGACTCTATGCTAGCAGAAAATGGGCTTCTTATTCTACAGTTCACATTCTTTCCGGATCAGCGTTACGATGAGTATAGGCGAAGTTCAGACTTCATAAAGGAGTATATTTTTCCGGGTGGATTGTTACCTTCATTAAGTAGGGTAACATCAGCTATGGTTGCTTCTTCCAGGTTCAGGATTTCTGCTTCTGCAATCGTTGCTCCTGCCAGTGCTAAAGTTGATGGTGGCAATTCCCTATTCTATATGTGA

Protein Analysis

383

Amino Acids

43.68

Weight (kDa)

8.52

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 150 - 361 5.7e-62 Mycolic acid cyclopropane synthetase
MTS PF05175 200 - 313 1.8e-07 Methyltransferase small domain
Methyltransf_23 PF13489 207 - 315 2.7e-10 Methyltransferase domain
Methyltransf_31 PF13847 208 - 290 7.2e-09 Methyltransferase domain
Methyltransf_25 PF13649 213 - 309 8e-15 Methyltransferase domain
Methyltransf_11 PF08241 214 - 313 3.7e-12 Methyltransferase domain
Methyltransf_12 PF08242 214 - 311 1.8e-11 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica MD16G1224400.v1.1
prunus_persica Prupe.1G045800_v2.0.a1
pyrus_communis pycom16g18780
rosa_chinensis RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 807
AccIII TCCGGA 1 cut(s) 955
AciI CCGC 2 cut(s) 537, 805
AclWI GGATC 1 cut(s) 966
AcoI YGGCCR 1 cut(s) 868
AcsI RAATTY 3 cut(s) 497, 875, 887
AcuI CTGAAG 1 cut(s) 755
AfiI CCNNNNNNNGG 2 cut(s) 646, 1077
AflIII ACRYGT 1 cut(s) 862
AgeI ACCGGT 1 cut(s) 692
AgsI TTSAA 7 cut(s) 169, 200, 333, 435, 571, 608, 677
AjnI CCWGG 1 cut(s) 1070
AluBI AGCT 3 cut(s) 395, 583, 1055
AluI AGCT 3 cut(s) 395, 583, 1055
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 1 cut(s) 966
Aor13HI TCCGGA 1 cut(s) 955
AoxI GGCC 3 cut(s) 235, 766, 868
ApeKI GCWGC 4 cut(s) 5, 8, 539, 793
ApoI RAATTY 3 cut(s) 497, 875, 887
AsiGI ACCGGT 1 cut(s) 692
AspLEI GCGC 1 cut(s) 40
AsuC2I CCSGG 1 cut(s) 1017
AsuHPI GGTGA 1 cut(s) 467
AsuNHI GCTAGC 1 cut(s) 913
BauI CACGAG 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 578
BbvI GCAGC 3 cut(s) 20, 526, 780
BccI CCATC 1 cut(s) 1118
BciT130I CCWGG 1 cut(s) 1072
BcnI CCSGG 1 cut(s) 1017
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 5 cut(s) 72, 615, 641, 857, 914
BfmI CTRYAG 3 cut(s) 6, 96, 938
BisI GCNGC 4 cut(s) 6, 9, 540, 794
BlsI GCNGC 4 cut(s) 7, 10, 541, 795
Bme1390I CCNGG 2 cut(s) 1017, 1072
BmrFI CCNGG 2 cut(s) 1017, 1072
BmsI GCATC 5 cut(s) 235, 366, 751, 789, 843
BmtI GCTAGC 1 cut(s) 917
BoxI GACNNNNGTC 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 578
Bpu10I CCTNAGC 1 cut(s) 584
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 1017
BsaWI WCCGGW 2 cut(s) 692, 955
Bsc4I CCNNNNNNNGG 2 cut(s) 646, 1077
Bse118I RCCGGY 1 cut(s) 692
Bse1I ACTGG 3 cut(s) 212, 712, 1110
Bse3DI GCAATG 1 cut(s) 315
BseAI TCCGGA 1 cut(s) 955
BseBI CCWGG 1 cut(s) 1072
BseGI GGATG 2 cut(s) 107, 381
BseLI CCNNNNNNNGG 2 cut(s) 646, 1077
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 3 cut(s) 71, 479, 830
BseNI ACTGG 3 cut(s) 212, 712, 1110
BseXI GCAGC 3 cut(s) 20, 526, 780
BseYI CCCAGC 1 cut(s) 406
BsgI GTGCAG 1 cut(s) 561
Bsh1236I CGCG 1 cut(s) 807
BshFI GGCC 3 cut(s) 237, 768, 870
BshTI ACCGGT 1 cut(s) 692
BsiSI CCGG 3 cut(s) 693, 956, 1016
BslI CCNNNNNNNGG 2 cut(s) 646, 1077
BsmAI GTCTC 1 cut(s) 76
BsnI GGCC 3 cut(s) 237, 768, 870
Bsp13I TCCGGA 1 cut(s) 955
Bsp143I GATC 2 cut(s) 484, 958
BspACI CCGC 2 cut(s) 537, 805
BspANI GGCC 3 cut(s) 237, 768, 870
BspCNI CTCAG 3 cut(s) 72, 480, 829
BspEI TCCGGA 1 cut(s) 955
BspFNI CGCG 1 cut(s) 807
BspMAI CTGCAG 1 cut(s) 10
BspOI GCTAGC 1 cut(s) 917
BspPI GGATC 1 cut(s) 966
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 692
BsrI ACTGG 3 cut(s) 212, 712, 1110
BssAI RCCGGY 1 cut(s) 692
BssMI GATC 2 cut(s) 484, 958
BssSI CACGAG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 1072
Bst4CI ACNGT 2 cut(s) 87, 942
Bst6I CTCTTC 1 cut(s) 558
BstAPI GCANNNNNTGC 1 cut(s) 1100
BstC8I GCNNGC 3 cut(s) 58, 766, 915
BstDEI CTNAG 5 cut(s) 80, 488, 584, 624, 816
BstF5I GGATG 2 cut(s) 107, 381
BstFNI CGCG 1 cut(s) 807
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 2 cut(s) 487, 961
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 2 cut(s) 484, 958
BstMWI GCNNNNNNNGC 4 cut(s) 156, 401, 1061, 1100
BstNI CCWGG 1 cut(s) 1072
BstNSI RCATGY 1 cut(s) 866
BstPAI GACNNNNGTC 1 cut(s) 288
BstSCI CCNGG 2 cut(s) 1015, 1070
BstSFI CTRYAG 3 cut(s) 6, 96, 938
BstUI CGCG 1 cut(s) 807
BstV1I GCAGC 3 cut(s) 20, 526, 780
BstV2I GAAGAC 1 cut(s) 578
BsuRI GGCC 3 cut(s) 237, 768, 870
BtsCI GGATG 2 cut(s) 107, 381
BtsIMutI CAGTG 2 cut(s) 705, 1117
Cac8I GCNNGC 3 cut(s) 58, 766, 915
CfoI GCGC 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 692
CspAI ACCGGT 1 cut(s) 692
CviAII CATG 4 cut(s) 514, 632, 863, 872
DdeI CTNAG 5 cut(s) 80, 488, 584, 624, 816
DpnI GATC 2 cut(s) 486, 960
DpnII GATC 2 cut(s) 484, 958
EaeI YGGCCR 1 cut(s) 868
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco147I AGGCCT 1 cut(s) 237
Eco32I GATATC 1 cut(s) 416
Eco57I CTGAAG 1 cut(s) 755
EcoRI GAATTC 1 cut(s) 887
EcoRII CCWGG 1 cut(s) 1070
EcoRV GATATC 1 cut(s) 416
EcoT22I ATGCAT 1 cut(s) 250
FaeI CATG 4 cut(s) 517, 635, 866, 875
FatI CATG 4 cut(s) 513, 631, 862, 871
Fnu4HI GCNGC 4 cut(s) 6, 9, 540, 794
FokI GGATG 2 cut(s) 114, 388
Fsp4HI GCNGC 4 cut(s) 6, 9, 540, 794
FspBI CTAG 5 cut(s) 72, 615, 641, 857, 914
GlaI GCGC 1 cut(s) 39
GluI GCNGC 4 cut(s) 6, 9, 540, 794
GsaI CCCAGC 1 cut(s) 410
HaeIII GGCC 3 cut(s) 237, 768, 870
HapII CCGG 3 cut(s) 693, 956, 1016
HhaI GCGC 1 cut(s) 40
Hin1II CATG 4 cut(s) 517, 635, 866, 875
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 4 cut(s) 298, 310, 329, 905
HpaII CCGG 3 cut(s) 693, 956, 1016
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 1 cut(s) 945
Hpy188I TCNGA 5 cut(s) 81, 489, 745, 819, 991
Hpy188III TCNNGA 4 cut(s) 293, 773, 956, 1078
Hpy8I GTNNAC 1 cut(s) 945
HpyAV CCTTC 7 cut(s) 43, 205, 363, 456, 718, 779, 1041
HpyCH4III ACNGT 2 cut(s) 87, 942
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 7 cut(s) 8, 133, 242, 248, 578, 736, 1094
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 401, 1061, 1100
HpyF3I CTNAG 5 cut(s) 80, 488, 584, 624, 816
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 4 cut(s) 517, 635, 866, 875
HspAI GCGC 1 cut(s) 38
Kpn2I TCCGGA 1 cut(s) 955
Kzo9I GATC 2 cut(s) 484, 958
LmnI GCTCC 1 cut(s) 1108
Lsp1109I GCAGC 3 cut(s) 20, 526, 780
LweI GCATC 5 cut(s) 235, 366, 751, 789, 843
MaeI CTAG 5 cut(s) 72, 615, 641, 857, 914
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 6 cut(s) 67, 797, 902, 965, 1026, 1045
MalI GATC 2 cut(s) 486, 960
MboI GATC 2 cut(s) 484, 958
MboII GAAGA 5 cut(s) 131, 569, 575, 583, 1059
MlyI GAGTC 1 cut(s) 899
MnlI CCTC 7 cut(s) 136, 353, 359, 448, 656, 825, 877
Mph1103I ATGCAT 1 cut(s) 250
MroI TCCGGA 1 cut(s) 955
MseI TTAA 5 cut(s) 180, 305, 386, 549, 1037
MslI CAYNNNNRTG 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 3 cut(s) 693, 956, 1016
MspR9I CCNGG 2 cut(s) 1017, 1072
MvaI CCWGG 1 cut(s) 1072
MvnI CGCG 1 cut(s) 807
MwoI GCNNNNNNNGC 4 cut(s) 156, 401, 1061, 1100
NciI CCSGG 1 cut(s) 1017
NdeII GATC 2 cut(s) 484, 958
NheI GCTAGC 1 cut(s) 913
NlaIII CATG 4 cut(s) 517, 635, 866, 875
NmuCI GTSAC 2 cut(s) 797, 902
NsiI ATGCAT 1 cut(s) 250
NspI RCATGY 1 cut(s) 866
PceI AGGCCT 1 cut(s) 237
PciI ACATGT 1 cut(s) 862
PfeI GAWTC 3 cut(s) 298, 310, 329
PinAI ACCGGT 1 cut(s) 692
PkrI GCNGC 4 cut(s) 7, 10, 541, 795
PleI GAGTC 1 cut(s) 899
PpsI GAGTC 1 cut(s) 899
PscI ACATGT 1 cut(s) 862
PshAI GACNNNNGTC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 1070
PspFI CCCAGC 1 cut(s) 406
PspGI CCWGG 1 cut(s) 1070
PstI CTGCAG 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 5 cut(s) 180, 305, 386, 549, 1037
SatI GCNGC 4 cut(s) 6, 9, 540, 794
Sau3AI GATC 2 cut(s) 484, 958
SchI GAGTC 1 cut(s) 899
ScrFI CCNGG 2 cut(s) 1017, 1072
SfaNI GCATC 5 cut(s) 235, 366, 751, 789, 843
SfcI CTRYAG 3 cut(s) 6, 96, 938
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SseBI AGGCCT 1 cut(s) 237
SsiI CCGC 2 cut(s) 537, 805
SspMI CTAG 5 cut(s) 72, 615, 641, 857, 914
StuI AGGCCT 1 cut(s) 237
StyD4I CCNGG 2 cut(s) 1015, 1070
TaaI ACNGT 2 cut(s) 87, 942
TaiI ACGT 1 cut(s) 432
TaqI TCGA 2 cut(s) 460, 722
TfiI GAWTC 3 cut(s) 298, 310, 329
Tru1I TTAA 5 cut(s) 180, 305, 386, 549, 1037
Tru9I TTAA 5 cut(s) 180, 305, 386, 549, 1037
TscAI CASTG 2 cut(s) 712, 1117
TseFI GTSAC 2 cut(s) 797, 902
TseI GCWGC 4 cut(s) 5, 8, 539, 793
Tsp45I GTSAC 2 cut(s) 797, 902
TspRI CASTG 2 cut(s) 712, 1117
XapI RAATTY 3 cut(s) 497, 875, 887
XceI RCATGY 1 cut(s) 866
XspI CTAG 5 cut(s) 72, 615, 641, 857, 914
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.