Rmu_sc0005802.1_g000020

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005802.1
OG0000555
Physical Location & Seq
Reverse (-)
90797 .. 98437
7641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005802.1_g000020.1.cds

Sequence Viewer

Length: 2592 bp
atgaaggtggcagtgattggttctggtattagtggtttggtctcagcctatgttcttgcaaaagaaggccttgaagtggttctatatgagaaaaaagactacctgggtggccatgccaggactgtcacatatgatggtgttgatttggaccttggtctcatggtcttcaatcatgttatgtatccaaatatgatggagttctttgagagccttggagttgatatggagacatgcgacatgtccttctcagtgagtttagataaaggaaggggctgtgaatggggtagtcaaaatagtctctcaagcttgtttgcagaaaagaagaacttattcaacccatacttctggaaaatgcttcaagaaatcaccaagtttaagcatgatttgatcagttatcttgaggtgcatgagaataacccagacattgaccggaatgaaaccttggggcagtttattgagtcacatcactactctgaactatttctgaaggcttaccttattccaatatgtagatcaatcttgtcgtgtccttcagaaggagttataagcttctctgctttctcagtgctttcggtttgtcgcaatcataatctacttcagctatttggcggcccacaatggcttaccatcaaatggggttcacactgttatgtgaagaaggtgaaagaagtgttggagagtaaagggtgtcagataagaaccgactgtgaggtgcataaagtttccacaactgatgagggttgcactgtttttactggagatggttttgaggaaatatacaatggatgcattatagctatccaagcccccgatgccatgagaatattaggagaacaggcaacacctgatgaactgagaatacttggcgccttccaatatgtgtactgtgatattttccttcatcgtgacaaaactttaatgcccctaaatctagcagcatggagtgcattaaactatcttggaagtactgacaacaaagtatgtttgacatactggctcaatcagcttcagaacctcagtgaaacaagtcaaccatatcttgtgacactcaatccagagcatacaccaaaccacaccttgcttaagtggtcaacaaaccatccagtcctatctgttgctgcatcgaaagcttcgctggagcttcctcatattcaaggaaagagaggaatttggttttgtggagcataccagggttatggcttccatgaggatgggctaaaggctggagtggctgcagcacatggtatgcttggaaaaggttgtgccctgttgggaaacccaaaacatatggctctttcattgacggaaacagcagcacgcctatttgttactagattttttagacattatatatctaccggatgtttagtcttattagaagagggaggcacaatgttcacctttgagggaagcagaaaggactgttctctaaaatccattcttaaagttcacagtcctcagttttactggaaagtaatgacacaggctgatctaggcattgcagatgcatatatcagtggtgatttttcttttgatgataaagaccgaggtcttctaaatctttttatgcttctcattgccaacagagattctaatgccttaaaatcaaacaagaaaaggggatggtggcagcctttgtttttcacagccactatagcgtcagccaaatgtgtctttcagcatgctttaaggaaaaatagtcttacacaggctcgaaggaacatatctcgtcattatgatctgagtaatgaactattttcgctgttcttgggtgaaacgatgatgtactccactgcaatatttaagacagaagatgaggatttgaatactgcacagcttaggaaaacctctattctcattgataaggccagaattgatgagaaccatgaggttctagatattggttgtggctggggaacctttgctattgaagcagtcaaacaaacgggctgcagatacactggcatcactctatctgaggaacaacttaaatttgctgaaaagaaagtgaaaaatgctggacttcagcaccggatcaagttccttctgtgtgactaccgccaattgccttcttaccacaaatatgacagaatcatatcttgtgagatgctagaacatgtcggccatgaatttatggacgagttcttttcttgctgtgagtctgtactggcaaaaaatgggctttttattctccagttcatatctatgccggatgaattctatgatgagtacctacgaagttcaggcttcatgaaggaatatatatttcctggtggatgtctaccgtcattaagtagggtaacatcagccatggccacttcttctagactctgtgtggagcacttggaaaacattggaattcattattatcaaacactaagatgttggagaaagaatttcttagagagacagagtgaaatactcgctcttggattcaatgaaaatttcattcgaacatgggaatattattttgattattgtgctgctggtttcaagtcacatacacttggagactaccagattgtgttttcacgtcctggtaatgctctcacattcaacaatccatataagggtttcccttcagcatattga

Protein Analysis

863

Amino Acids

98.0

Weight (kDa)

6.31

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica MD16G1224400.v1.1
prunus_persica Prupe.1G045800_v2.0.a1
pyrus_communis pycom16g18780
rosa_chinensis RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 545
AccB1I GGYRCC 1 cut(s) 866
AccB7I CCANNNNNTGG 1 cut(s) 633
AccI GTMKAC 1 cut(s) 2281
AciI CCGC 2 cut(s) 609, 2059
AclWI GGATC 1 cut(s) 2042
AcoI YGGCCR 3 cut(s) 109, 2122, 2313
AcsI RAATTY 7 cut(s) 1167, 1991, 2129, 2216, 2358, 2395, 2443
AcuI CTGAAG 6 cut(s) 506, 516, 581, 992, 2009, 2565
AcyI GRCGYC 1 cut(s) 867
AfaI GTAC 5 cut(s) 884, 967, 1787, 2166, 2231
AfiI CCNNNNNNNGG 4 cut(s) 76, 536, 633, 2570
AflII CTTAAG 1 cut(s) 1082
AflIII ACRYGT 2 cut(s) 237, 2116
AjiI CACGTC 1 cut(s) 2534
AjnI CCWGG 5 cut(s) 102, 116, 1188, 2269, 2536
AjuI GAANNNNNNNTTGG 4 cut(s) 425, 457, 656, 688
AluBI AGCT 8 cut(s) 306, 549, 601, 797, 1006, 1130, 1141, 1837
AluI AGCT 8 cut(s) 306, 549, 601, 797, 1006, 1130, 1141, 1837
Alw21I GWGCWC 1 cut(s) 2343
Alw26I GTCTC 6 cut(s) 46, 161, 221, 302, 2401, 2505
AlwI GGATC 1 cut(s) 2042
AoxI GGCC 6 cut(s) 67, 109, 610, 1866, 2122, 2313
ApeKI GCWGC 8 cut(s) 935, 1118, 1232, 1235, 1313, 1630, 1950, 2483
ApoI RAATTY 7 cut(s) 1167, 1991, 2129, 2216, 2358, 2395, 2443
Asp700I GAANNNNTTC 3 cut(s) 78, 329, 480
AspLEI GCGC 1 cut(s) 869
AspS9I GGNCC 2 cut(s) 148, 611
AsuHPI GGTGA 5 cut(s) 358, 673, 1390, 1532, 1784
AsuII TTCGAA 1 cut(s) 2452
AvaII GGWCC 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 1267
BalI TGGCCA 2 cut(s) 111, 2315
BanI GGYRCC 1 cut(s) 866
BbsI GAAGAC 2 cut(s) 157, 1544
Bbv12I GWGCWC 1 cut(s) 2343
BbvI GCAGC 8 cut(s) 947, 1105, 1219, 1247, 1325, 1642, 1937, 2470
BccI CCATC 7 cut(s) 128, 187, 635, 755, 1107, 1205, 1617
BciT130I CCWGG 5 cut(s) 104, 118, 1190, 2271, 2538
BciVI GTATCC 1 cut(s) 192
BclI TGATCA 1 cut(s) 387
BcoDI GTCTC 6 cut(s) 46, 161, 221, 302, 2401, 2505
BfaI CTAG 6 cut(s) 932, 1332, 1493, 1895, 2111, 2325
BfmI CTRYAG 3 cut(s) 1233, 1653, 1951
BfoI RGCGCY 1 cut(s) 870
BfrI CTTAAG 1 cut(s) 1082
BfuI GTATCC 1 cut(s) 192
BisI GCNGC 9 cut(s) 610, 936, 1119, 1233, 1236, 1314, 1631, 1951, 2484
BlsI GCNGC 9 cut(s) 611, 937, 1120, 1234, 1237, 1315, 1632, 1952, 2485
BmcAI AGTACT 1 cut(s) 967
Bme1390I CCNGG 5 cut(s) 104, 118, 1190, 2271, 2538
Bme18I GGWCC 1 cut(s) 148
BmgBI CACGTC 1 cut(s) 2534
BmgT120I GGNCC 2 cut(s) 148, 611
BmiI GGNNCC 2 cut(s) 868, 1918
BmrFI CCNGG 5 cut(s) 104, 118, 1190, 2271, 2538
BmsI GCATC 6 cut(s) 776, 802, 1130, 1495, 1974, 2097
BoxI GACNNNNGTC 2 cut(s) 153, 1548
BpiI GAAGAC 2 cut(s) 157, 1544
BpmI CTGGAG 4 cut(s) 777, 1157, 1245, 2177
Bpu10I CCTNAGC 1 cut(s) 1838
Bpu14I TTCGAA 1 cut(s) 2452
BpuEI CTTGAG 2 cut(s) 286, 419
BsaHI GRCGYC 1 cut(s) 867
BsaI GGTCTC 2 cut(s) 46, 161
BsaJI CCNNGG 7 cut(s) 103, 151, 211, 441, 1189, 1546, 2310
BsaWI WCCGGW 3 cut(s) 429, 1358, 2031
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 536, 633, 2570
Bse1I ACTGG 7 cut(s) 760, 998, 1103, 1472, 1966, 2172, 2194
Bse3DI GCAATG 2 cut(s) 1497, 1575
BseBI CCWGG 5 cut(s) 104, 118, 1190, 2271, 2538
BseDI CCNNGG 7 cut(s) 103, 151, 211, 441, 1189, 1546, 2310
BseGI GGATG 7 cut(s) 791, 1099, 1216, 1367, 1628, 2218, 2282
BseLI CCNNNNNNNGG 4 cut(s) 76, 536, 633, 2570
BseMI GCAATG 2 cut(s) 1497, 1575
BseMII CTCAG 8 cut(s) 57, 261, 576, 845, 1030, 1472, 1733, 1968
BseNI ACTGG 7 cut(s) 760, 998, 1103, 1472, 1966, 2172, 2194
BseSI GKGCMC 1 cut(s) 1267
BseXI GCAGC 8 cut(s) 947, 1105, 1219, 1247, 1325, 1642, 1937, 2470
BseYI CCCAGC 1 cut(s) 1911
BsgI GTGCAG 1 cut(s) 1815
BshFI GGCC 6 cut(s) 69, 111, 612, 1868, 2124, 2315
BshNI GGYRCC 1 cut(s) 866
BsiHKAI GWGCWC 1 cut(s) 2343
BsiSI CCGG 4 cut(s) 430, 1359, 2032, 2210
BslI CCNNNNNNNGG 4 cut(s) 76, 536, 633, 2570
BsmAI GTCTC 6 cut(s) 46, 161, 221, 302, 2401, 2505
BsnI GGCC 6 cut(s) 69, 111, 612, 1868, 2124, 2315
Bso31I GGTCTC 2 cut(s) 46, 161
Bsp119I TTCGAA 1 cut(s) 2452
Bsp1286I GDGCHC 2 cut(s) 1267, 2343
Bsp143I GATC 5 cut(s) 387, 512, 1489, 1738, 2034
Bsp19I CCATGG 1 cut(s) 2310
BspACI CCGC 2 cut(s) 609, 2059
BspANI GGCC 6 cut(s) 69, 111, 612, 1868, 2124, 2315
BspCNI CTCAG 8 cut(s) 56, 260, 575, 846, 1029, 1471, 1734, 1969
BspHI TCATGA 1 cut(s) 2250
BspLI GGNNCC 2 cut(s) 868, 1918
BspMAI CTGCAG 2 cut(s) 1237, 1955
BspPI GGATC 1 cut(s) 2042
BspT104I TTCGAA 1 cut(s) 2452
BspT107I GGYRCC 1 cut(s) 866
BspTI CTTAAG 1 cut(s) 1082
BspTNI GGTCTC 2 cut(s) 46, 161
BsrDI GCAATG 2 cut(s) 1497, 1575
BsrI ACTGG 7 cut(s) 760, 998, 1103, 1472, 1966, 2172, 2194
BssECI CCNNGG 7 cut(s) 103, 151, 211, 441, 1189, 1546, 2310
BssMI GATC 5 cut(s) 387, 512, 1489, 1738, 2034
BssNI GRCGYC 1 cut(s) 867
BssT1I CCWWGG 4 cut(s) 151, 211, 441, 2310
Bst2UI CCWGG 5 cut(s) 104, 118, 1190, 2271, 2538
Bst4CI ACNGT 8 cut(s) 124, 647, 707, 748, 887, 1424, 1454, 2286
Bst6I CTCTTC 1 cut(s) 1374
BstACI GRCGYC 1 cut(s) 867
BstAFI CTTAAG 1 cut(s) 1082
BstAPI GCANNNNNTGC 1 cut(s) 944
BstBI TTCGAA 1 cut(s) 2452
BstC8I GCNNGC 2 cut(s) 1318, 1683
BstDSI CCRYGG 1 cut(s) 2310
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 7 cut(s) 791, 1099, 1216, 1367, 1628, 2218, 2282
BstH2I RGCGCY 1 cut(s) 870
BstHHI GCGC 1 cut(s) 869
BstKTI GATC 5 cut(s) 390, 515, 1492, 1741, 2037
BstMAI GTCTC 6 cut(s) 46, 161, 221, 302, 2401, 2505
BstMBI GATC 5 cut(s) 387, 512, 1489, 1738, 2034
BstMWI GCNNNNNNNGC 8 cut(s) 803, 812, 944, 1003, 1127, 1229, 1655, 1931
BstNI CCWGG 5 cut(s) 104, 118, 1190, 2271, 2538
BstNSI RCATGY 4 cut(s) 234, 241, 1685, 2120
BstPAI GACNNNNGTC 2 cut(s) 153, 1548
BstSCI CCNGG 5 cut(s) 102, 116, 1188, 2269, 2536
BstSFI CTRYAG 3 cut(s) 1233, 1653, 1951
BstSLI GKGCMC 1 cut(s) 1267
BstV1I GCAGC 8 cut(s) 947, 1105, 1219, 1247, 1325, 1642, 1937, 2470
BstV2I GAAGAC 2 cut(s) 157, 1544
BstXI CCANNNNNNTGG 3 cut(s) 345, 1196, 1211
BsuI GTATCC 1 cut(s) 192
BsuRI GGCC 6 cut(s) 69, 111, 612, 1868, 2124, 2315
BtgI CCRYGG 1 cut(s) 2310
BtrI CACGTC 1 cut(s) 2534
BtsCI GGATG 7 cut(s) 791, 1099, 1216, 1367, 1628, 2218, 2282
BtsI GCAGTG 2 cut(s) 18, 1791
BtsIMutI CAGTG 9 cut(s) 18, 255, 570, 643, 744, 1024, 1522, 1791, 1959
Cac8I GCNNGC 2 cut(s) 1318, 1683
CciI TCATGA 1 cut(s) 2250
CfoI GCGC 1 cut(s) 869
Cfr13I GGNCC 2 cut(s) 148, 611
CseI GACGC 1 cut(s) 1647
Csp6I GTAC 5 cut(s) 883, 966, 1786, 2165, 2230
CviQI GTAC 5 cut(s) 883, 966, 1786, 2165, 2230
DinI GGCGCC 1 cut(s) 868
DpnI GATC 5 cut(s) 389, 514, 1491, 1740, 2036
DpnII GATC 5 cut(s) 387, 512, 1489, 1738, 2034
EaeI YGGCCR 3 cut(s) 109, 2122, 2313
Eam1104I CTCTTC 1 cut(s) 1374
EarI CTCTTC 1 cut(s) 1374
Eco130I CCWWGG 4 cut(s) 151, 211, 441, 2310
Eco147I AGGCCT 1 cut(s) 69
Eco31I GGTCTC 2 cut(s) 46, 161
Eco47I GGWCC 1 cut(s) 148
Eco57I CTGAAG 6 cut(s) 506, 516, 581, 992, 2009, 2565
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoRI GAATTC 2 cut(s) 2216, 2358
EcoRII CCWGG 5 cut(s) 102, 116, 1188, 2269, 2536
EcoT14I CCWWGG 4 cut(s) 151, 211, 441, 2310
EcoT22I ATGCAT 2 cut(s) 791, 1510
EgeI GGCGCC 1 cut(s) 868
EheI GGCGCC 1 cut(s) 868
ErhI CCWWGG 4 cut(s) 151, 211, 441, 2310
FalI AAGNNNNNCTT 6 cut(s) 54, 86, 311, 343, 2384, 2416
FauNDI CATATG 2 cut(s) 130, 1287
FbaI TGATCA 1 cut(s) 387
FblI GTMKAC 1 cut(s) 2281
Fnu4HI GCNGC 9 cut(s) 610, 936, 1119, 1233, 1236, 1314, 1631, 1951, 2484
FokI GGATG 7 cut(s) 798, 1086, 1223, 1374, 1635, 2225, 2289
Fsp4HI GCNGC 9 cut(s) 610, 936, 1119, 1233, 1236, 1314, 1631, 1951, 2484
FspBI CTAG 6 cut(s) 932, 1332, 1493, 1895, 2111, 2325
GlaI GCGC 1 cut(s) 868
GluI GCNGC 9 cut(s) 610, 936, 1119, 1233, 1236, 1314, 1631, 1951, 2484
GsaI CCCAGC 1 cut(s) 1915
GsuI CTGGAG 4 cut(s) 777, 1157, 1245, 2177
HaeII RGCGCY 1 cut(s) 870
HaeIII GGCC 6 cut(s) 69, 111, 612, 1868, 2124, 2315
HapII CCGG 4 cut(s) 430, 1359, 2032, 2210
HgaI GACGC 1 cut(s) 1647
HhaI GCGC 1 cut(s) 869
Hin1I GRCGYC 1 cut(s) 867
Hin6I GCGC 1 cut(s) 867
HinP1I GCGC 1 cut(s) 867
HincII GTYRAC 2 cut(s) 1031, 1092
HindII GTYRAC 2 cut(s) 1031, 1092
HindIII AAGCTT 3 cut(s) 304, 547, 1128
HinfI GANTC 6 cut(s) 458, 1589, 2091, 2159, 2328, 2433
HpaII CCGG 4 cut(s) 430, 1359, 2032, 2210
HphI GGTGA 5 cut(s) 358, 673, 1390, 1532, 1784
Hpy166II GTNNAC 7 cut(s) 641, 883, 1031, 1092, 1398, 1450, 2282
Hpy188I TCNGA 7 cut(s) 475, 486, 535, 693, 1011, 1743, 1978
Hpy188III TCNNGA 8 cut(s) 346, 359, 398, 905, 1055, 1895, 2251, 2325
Hpy8I GTNNAC 7 cut(s) 641, 883, 1031, 1092, 1398, 1450, 2282
HpyCH4III ACNGT 8 cut(s) 124, 647, 707, 748, 887, 1424, 1454, 2286
HpyCH4IV ACGT 1 cut(s) 2533
HpyF10VI GCNNNNNNNGC 8 cut(s) 803, 812, 944, 1003, 1127, 1229, 1655, 1931
HpySE526I ACGT 1 cut(s) 2533
Hsp92I GRCGYC 1 cut(s) 867
HspAI GCGC 1 cut(s) 867
KasI GGCGCC 1 cut(s) 866
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 5 cut(s) 387, 512, 1489, 1738, 2034
LmnI GCTCC 3 cut(s) 1138, 1181, 2338
Lsp1109I GCAGC 8 cut(s) 947, 1105, 1219, 1247, 1325, 1642, 1937, 2470
LweI GCATC 6 cut(s) 776, 802, 1130, 1495, 1974, 2097
MaeI CTAG 6 cut(s) 932, 1332, 1493, 1895, 2111, 2325
MaeII ACGT 1 cut(s) 2533
MaeIII GTNAC 8 cut(s) 124, 459, 905, 1042, 1327, 2051, 2299, 2496
MalI GATC 5 cut(s) 389, 514, 1491, 1740, 2036
MboI GATC 5 cut(s) 387, 512, 1489, 1738, 2034
MboII GAAGA 7 cut(s) 157, 334, 667, 1391, 1544, 1823, 2313
MfeI CAATTG 1 cut(s) 2063
MhlI GDGCHC 2 cut(s) 1267, 2343
MlsI TGGCCA 2 cut(s) 111, 2315
MluCI AATT 9 cut(s) 1167, 1872, 1991, 2063, 2129, 2216, 2358, 2395, 2443
MluNI TGGCCA 2 cut(s) 111, 2315
Mly113I GGCGCC 1 cut(s) 867
MlyI GAGTC 3 cut(s) 467, 2168, 2322
MmeI TCCRAC 2 cut(s) 654, 2366
Mox20I TGGCCA 2 cut(s) 111, 2315
Mph1103I ATGCAT 2 cut(s) 791, 1510
MroXI GAANNNNTTC 3 cut(s) 78, 329, 480
MscI TGGCCA 2 cut(s) 111, 2315
MslI CAYNNNNRTG 5 cut(s) 648, 1209, 2082, 2204, 2380
Msp20I TGGCCA 2 cut(s) 111, 2315
MspCI CTTAAG 1 cut(s) 1082
MspI CCGG 4 cut(s) 430, 1359, 2032, 2210
MspR9I CCNGG 5 cut(s) 104, 118, 1190, 2271, 2538
MunI CAATTG 1 cut(s) 2063
MvaI CCWGG 5 cut(s) 104, 118, 1190, 2271, 2538
MwoI GCNNNNNNNGC 8 cut(s) 803, 812, 944, 1003, 1127, 1229, 1655, 1931
NarI GGCGCC 1 cut(s) 867
NcoI CCATGG 1 cut(s) 2310
NdeI CATATG 2 cut(s) 130, 1287
NdeII GATC 5 cut(s) 387, 512, 1489, 1738, 2034
NlaIV GGNNCC 2 cut(s) 868, 1918
NmuCI GTSAC 6 cut(s) 124, 459, 905, 1042, 2051, 2496
NsiI ATGCAT 2 cut(s) 791, 1510
NspI RCATGY 4 cut(s) 234, 241, 1685, 2120
NspV TTCGAA 1 cut(s) 2452
PaeI GCATGC 1 cut(s) 1685
PagI TCATGA 1 cut(s) 2250
PceI AGGCCT 1 cut(s) 69
PciI ACATGT 2 cut(s) 237, 2116
PdmI GAANNNNTTC 3 cut(s) 78, 329, 480
PfeI GAWTC 3 cut(s) 1589, 2091, 2433
PflMI CCANNNNNTGG 1 cut(s) 633
PkrI GCNGC 9 cut(s) 611, 937, 1120, 1234, 1237, 1315, 1632, 1952, 2485
PleI GAGTC 3 cut(s) 466, 2167, 2322
PluTI GGCGCC 1 cut(s) 870
PpsI GAGTC 3 cut(s) 466, 2167, 2322
PscI ACATGT 2 cut(s) 237, 2116
PshAI GACNNNNGTC 2 cut(s) 153, 1548
PsiI TTATAA 1 cut(s) 545
Psp6I CCWGG 5 cut(s) 102, 116, 1188, 2269, 2536
PspFI CCCAGC 1 cut(s) 1911
PspGI CCWGG 5 cut(s) 102, 116, 1188, 2269, 2536
PspN4I GGNNCC 2 cut(s) 868, 1918
PspPI GGNCC 2 cut(s) 148, 611
PsrI GAACNNNNNNTAC 2 cut(s) 843, 875
PstI CTGCAG 2 cut(s) 1237, 1955
RsaI GTAC 5 cut(s) 884, 967, 1787, 2166, 2231
RsaNI GTAC 5 cut(s) 883, 966, 1786, 2165, 2230
RseI CAYNNNNRTG 5 cut(s) 648, 1209, 2082, 2204, 2380
SatI GCNGC 9 cut(s) 610, 936, 1119, 1233, 1236, 1314, 1631, 1951, 2484
Sau3AI GATC 5 cut(s) 387, 512, 1489, 1738, 2034
Sau96I GGNCC 2 cut(s) 148, 611
ScaI AGTACT 1 cut(s) 967
SchI GAGTC 3 cut(s) 467, 2168, 2322
ScrFI CCNGG 5 cut(s) 104, 118, 1190, 2271, 2538
SduI GDGCHC 2 cut(s) 1267, 2343
SfaNI GCATC 6 cut(s) 776, 802, 1130, 1495, 1974, 2097
SfcI CTRYAG 3 cut(s) 1233, 1653, 1951
SfoI GGCGCC 1 cut(s) 868
SfuI TTCGAA 1 cut(s) 2452
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 5 cut(s) 648, 1209, 2082, 2204, 2380
SmlI CTYRAG 3 cut(s) 301, 398, 1082
SmoI CTYRAG 3 cut(s) 301, 398, 1082
SphI GCATGC 1 cut(s) 1685
Sse9I AATT 9 cut(s) 1167, 1872, 1991, 2063, 2129, 2216, 2358, 2395, 2443
SseBI AGGCCT 1 cut(s) 69
SsiI CCGC 2 cut(s) 609, 2059
SspDI GGCGCC 1 cut(s) 866
SspI AATATT 3 cut(s) 825, 1800, 2465
SspMI CTAG 6 cut(s) 932, 1332, 1493, 1895, 2111, 2325
StuI AGGCCT 1 cut(s) 69
StyD4I CCNGG 5 cut(s) 102, 116, 1188, 2269, 2536
StyI CCWWGG 4 cut(s) 151, 211, 441, 2310
TaaI ACNGT 8 cut(s) 124, 647, 707, 748, 887, 1424, 1454, 2286
TaiI ACGT 1 cut(s) 2536
TaqI TCGA 3 cut(s) 1124, 1714, 2452
TaqII GACCGA 1 cut(s) 1560
TasI AATT 9 cut(s) 1167, 1872, 1991, 2063, 2129, 2216, 2358, 2395, 2443
TatI WGTACW 4 cut(s) 882, 965, 1785, 2164
TauI GCSGC 1 cut(s) 612
TfiI GAWTC 3 cut(s) 1589, 2091, 2433
TscAI CASTG 9 cut(s) 18, 255, 570, 650, 751, 1024, 1522, 1798, 1966
TseFI GTSAC 6 cut(s) 124, 459, 905, 1042, 2051, 2496
TseI GCWGC 8 cut(s) 935, 1118, 1232, 1235, 1313, 1630, 1950, 2483
Tsp45I GTSAC 6 cut(s) 124, 459, 905, 1042, 2051, 2496
TspGWI ACGGA 1 cut(s) 1319
TspRI CASTG 9 cut(s) 18, 255, 570, 650, 751, 1024, 1522, 1798, 1966
Van91I CCANNNNNTGG 1 cut(s) 633
Vha464I CTTAAG 1 cut(s) 1082
VpaK11BI GGWCC 1 cut(s) 148
XagI CCTNNNNNAGG 1 cut(s) 534
XapI RAATTY 7 cut(s) 1167, 1991, 2129, 2216, 2358, 2395, 2443
XbaI TCTAGA 2 cut(s) 1894, 2324
XceI RCATGY 4 cut(s) 234, 241, 1685, 2120
XmiI GTMKAC 1 cut(s) 2281
XmnI GAANNNNTTC 3 cut(s) 78, 329, 480
XspI CTAG 6 cut(s) 932, 1332, 1493, 1895, 2111, 2325
ZrmI AGTACT 1 cut(s) 967
Zsp2I ATGCAT 2 cut(s) 791, 1510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.