Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000555

Physical Location & Seq

Genomic Coordinates Reverse (-)

8748471 .. 8762869

Gene Structure 14399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G004420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGCTGCAGCCCATGGTATGCTTGGAAAAGGTTGTGCCCTGTTAAGAAACCCAAAACATATGGCTTTTTCAACGACTGAAACAGCGGCACGCTTGTTTGTTACTAGATTTCTTAGACATTATATATCTACCGGATGTTTGATCTTATTAGAAGAGGGCGGCACAATGTTCACCTTTGAGGGAAGCAGAAAGGACTGTTCTCTAAAATCCGTTCTCAAAGTTCACAGTCCTCAGTTTTACTGGAAAGTAATGACGAAGGCTGATTTAGGCATTGCAGATGCATATATCGATGGTGATTTTTCTTTCAATGATAAAGACCAAGGTCTTCTAAATCTTATTATGCTTCTCATTGCCAACGGAGATTCTAATGCCTCAAAATCAAACAAGAAAAGGGGAAGGTGGCAGCCTTTGTTTTTCACAGCCACCATAGGCTCTATAGCCTCAGCCAGATACTTCTTTCAGCAAGCTTTGAAGAAAAATAGTCTTGCACAGGCTCGAAGGAATATATCTCATCATTATGATCTGAGTAATGAACTATTCTCGTTGTTCTTGGGCGAAACAATGATGTATTCCGCTGCAATATTTAAGACAGAAGATGAGGAACTGAATACTGCACAGCTTAGGAAAATCTCTATTCTCATTGATAAGGCTAAAATCGATAAGAACCATGAGGTTCTAGATATGGGTTGTGGTTGGGGAGCCATAGCTATTGAAGCAGTCAAACAAACGGGCTGCAGATACACTGGCATCACTCTATCTGAGGAACAACTTAAATTTGCTGAAAAGAAAGTGAAAGATGCTGGACTTCAGCACCGGATCAAGTTCCTTCTGTGTGACTACCGCCAATTGCCTTCTTACCACAAATACGACAGAATCATAGCTTGCGAGATCCTAGAACATGTCGGCCATGAATTTGTGGATGAGTTTTTTTCATGTTGTGAGTCTTTACTAGCAGAAAATGGGATTCTAGTTCAGCAGTTCACATCTATAGCGGATGAACGCTATGATGAGTACAGGCGAAGTTCAGGCTTCATAAAGGAATATATATTTCCTGGTGGATGTCTACTTTCATTAAGTAGGGTAACATCAGCCATGGCCGCTTCTTCTAGACTCTGTGTGGAGCACTTGGAAAACATCGGAATTCATTATTACCAAACACTACGATGTTGGAGAAAGAATTTTTTAGAGAGACAGAGTGAAATACTAGCTCTTGGATTCAATGAAAATTTCATTCGGACATGGGAATATTATTTTGATTATTGTGCTGCTGGTTTCAAGTCATATACACCGCTTAGAAATTACCAGATTGTGTTTTCACGTCCCGGAAATGTTCTCACATTCAACAATCCATATAAGGGTTTCCCTTCAGCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0008825 GO:0009987 GO:0016740 GO:0016741 GO:0030258 GO:0032259 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase CMAS NAD_binding_8

Protein Analysis

458

Amino Acids

52.31

Weight (kDa)

8.54

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CMAS	PF02353	163 - 427	2e-76	Mycolic acid cyclopropane synthetase
MTS	PF05175	213 - 323	6.2e-07	Methyltransferase small domain
Methyltransf_23	PF13489	217 - 326	2e-08	Methyltransferase domain
Methyltransf_31	PF13847	219 - 326	6e-13	Methyltransferase domain
PrmA	PF06325	219 - 334	6e-07	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_25	PF13649	225 - 321	4.9e-16	Methyltransferase domain
Methyltransf_11	PF08241	226 - 324	5.9e-13	Methyltransferase domain
Methyltransf_12	PF08242	226 - 323	1.7e-12	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca	FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica	MD16G1224400.v1.1
prunus_persica	Prupe.1G045800_v2.0.a1
pyrus_communis	pycom16g18780
rosa_chinensis	RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata	RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora	Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii	Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa	Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha	Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana	Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1063
AciI	CCGC	7 cut(s)	86, 159, 573, 841, 992, 1098, 1289
AclWI	GGATC	2 cut(s)	824, 883
AcoI	YGGCCR	2 cut(s)	904, 1095
AcsI	RAATTY	5 cut(s)	773, 911, 1140, 1177, 1225
AcuI	CTGAAG	2 cut(s)	791, 1350
AfaI	GTAC	1 cut(s)	1013
AfiI	CCNNNNNNNGG	1 cut(s)	1355
AflIII	ACRYGT	1 cut(s)	898
AgsI	TTSAA	7 cut(s)	72, 307, 472, 713, 1219, 1276, 1342
AjiI	CACGTC	1 cut(s)	1319
AjnI	CCWGG	1 cut(s)	1051
AluBI	AGCT	5 cut(s)	467, 619, 707, 881, 1208
AluI	AGCT	5 cut(s)	467, 619, 707, 881, 1208
Alw21I	GWGCWC	1 cut(s)	1125
Alw26I	GTCTC	1 cut(s)	1183
AlwI	GGATC	2 cut(s)	824, 883
AoxI	GGCC	2 cut(s)	904, 1095
ApeKI	GCWGC	6 cut(s)	5, 8, 403, 575, 732, 1265
ApoI	RAATTY	5 cut(s)	773, 911, 1140, 1177, 1225
AsuC2I	CCSGG	1 cut(s)	1323
AsuHPI	GGTGA	2 cut(s)	163, 305
BaeGI	GKGCMC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	1125
BbvCI	CCTCAGC	1 cut(s)	442
BbvI	GCAGC	5 cut(s)	20, 415, 562, 719, 1252
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	1053
BcnI	CCSGG	1 cut(s)	1323
BcoDI	GTCTC	1 cut(s)	1183
BfaI	CTAG	7 cut(s)	105, 677, 893, 950, 968, 1107, 1205
BfmI	CTRYAG	4 cut(s)	6, 435, 733, 987
BisI	GCNGC	9 cut(s)	6, 9, 87, 160, 404, 576, 733, 1098, 1266
BlsI	GCNGC	9 cut(s)	7, 10, 88, 161, 405, 577, 734, 1099, 1267
Bme1390I	CCNGG	2 cut(s)	1053, 1323
BmgBI	CACGTC	1 cut(s)	1319
BmiI	GGNNCC	1 cut(s)	700
BmrFI	CCNGG	2 cut(s)	1053, 1323
BmsI	GCATC	3 cut(s)	268, 756, 787
BoxI	GACNNNNGTC	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	317
Bpu10I	CCTNAGC	2 cut(s)	442, 620
BpuMI	CCSGG	1 cut(s)	1323
Bsa29I	ATCGAT	2 cut(s)	288, 657
BsaJI	CCNNGG	3 cut(s)	13, 319, 1092
BsaWI	WCCGGW	2 cut(s)	131, 813
Bsc4I	CCNNNNNNNGG	1 cut(s)	1355
Bse1I	ACTGG	2 cut(s)	245, 748
Bse3DI	GCAATG	2 cut(s)	270, 348
BseBI	CCWGG	1 cut(s)	1053
BseCI	ATCGAT	2 cut(s)	288, 657
BseDI	CCNNGG	3 cut(s)	13, 319, 1092
BseGI	GGATG	4 cut(s)	140, 925, 1000, 1064
BseLI	CCNNNNNNNGG	1 cut(s)	1355
BseMI	GCAATG	2 cut(s)	270, 348
BseMII	CTCAG	4 cut(s)	245, 456, 515, 750
BseNI	ACTGG	2 cut(s)	245, 748
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	5 cut(s)	20, 415, 562, 719, 1252
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	2 cut(s)	906, 1097
BshVI	ATCGAT	2 cut(s)	288, 657
BsiHKAI	GWGCWC	1 cut(s)	1125
BsiSI	CCGG	3 cut(s)	132, 814, 1323
BslFI	GGGAC	1 cut(s)	1305
BslI	CCNNNNNNNGG	1 cut(s)	1355
BsmAI	GTCTC	1 cut(s)	1183
BsmFI	GGGAC	1 cut(s)	1305
BsnI	GGCC	2 cut(s)	906, 1097
Bsp1286I	GDGCHC	2 cut(s)	40, 1125
Bsp143I	GATC	4 cut(s)	141, 520, 816, 888
Bsp19I	CCATGG	2 cut(s)	13, 1092
BspACI	CCGC	7 cut(s)	86, 159, 573, 841, 992, 1098, 1289
BspANI	GGCC	2 cut(s)	906, 1097
BspCNI	CTCAG	4 cut(s)	244, 455, 516, 751
BspDI	ATCGAT	2 cut(s)	288, 657
BspLI	GGNNCC	1 cut(s)	700
BspMAI	CTGCAG	2 cut(s)	10, 737
BspPI	GGATC	2 cut(s)	824, 883
BsrDI	GCAATG	2 cut(s)	270, 348
BsrI	ACTGG	2 cut(s)	245, 748
BssECI	CCNNGG	3 cut(s)	13, 319, 1092
BssMI	GATC	4 cut(s)	141, 520, 816, 888
BssT1I	CCWWGG	3 cut(s)	13, 319, 1092
Bst2UI	CCWGG	1 cut(s)	1053
Bst4CI	ACNGT	2 cut(s)	197, 227
Bst6I	CTCTTC	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	91, 465, 883
BstDEI	CTNAG	7 cut(s)	113, 231, 442, 524, 620, 759, 1292
BstDSI	CCRYGG	2 cut(s)	13, 1092
BstF5I	GGATG	4 cut(s)	140, 925, 1000, 1064
BstKTI	GATC	4 cut(s)	144, 523, 819, 891
BstMAI	GTCTC	1 cut(s)	1183
BstMBI	GATC	4 cut(s)	141, 520, 816, 888
BstMWI	GCNNNNNNNGC	2 cut(s)	713, 1097
BstNI	CCWGG	1 cut(s)	1053
BstNSI	RCATGY	1 cut(s)	902
BstPAI	GACNNNNGTC	1 cut(s)	321
BstSCI	CCNGG	2 cut(s)	1051, 1321
BstSFI	CTRYAG	4 cut(s)	6, 435, 733, 987
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	5 cut(s)	20, 415, 562, 719, 1252
BstV2I	GAAGAC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	888
BstYI	RGATCY	1 cut(s)	888
Bsu15I	ATCGAT	2 cut(s)	288, 657
BsuRI	GGCC	2 cut(s)	906, 1097
BsuTUI	ATCGAT	2 cut(s)	288, 657
BtgI	CCRYGG	2 cut(s)	13, 1092
BtrI	CACGTC	1 cut(s)	1319
BtsCI	GGATG	4 cut(s)	140, 925, 1000, 1064
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	3 cut(s)	91, 465, 883
ClaI	ATCGAT	2 cut(s)	288, 657
Csp6I	GTAC	1 cut(s)	1012
CviAII	CATG	7 cut(s)	14, 668, 899, 908, 933, 1093, 1239
CviQI	GTAC	1 cut(s)	1012
DdeI	CTNAG	7 cut(s)	113, 231, 442, 524, 620, 759, 1292
DpnI	GATC	4 cut(s)	143, 522, 818, 890
DpnII	GATC	4 cut(s)	141, 520, 816, 888
EaeI	YGGCCR	2 cut(s)	904, 1095
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	3 cut(s)	13, 319, 1092
Eco57I	CTGAAG	2 cut(s)	791, 1350
EcoRI	GAATTC	1 cut(s)	1140
EcoRII	CCWGG	1 cut(s)	1051
EcoT14I	CCWWGG	3 cut(s)	13, 319, 1092
EcoT22I	ATGCAT	1 cut(s)	283
ErhI	CCWWGG	3 cut(s)	13, 319, 1092
FaeI	CATG	7 cut(s)	17, 671, 902, 911, 936, 1096, 1242
FaqI	GGGAC	1 cut(s)	1305
FatI	CATG	7 cut(s)	13, 667, 898, 907, 932, 1092, 1238
FauNDI	CATATG	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	1063
Fnu4HI	GCNGC	9 cut(s)	6, 9, 87, 160, 404, 576, 733, 1098, 1266
FokI	GGATG	4 cut(s)	147, 932, 1007, 1071
Fsp4HI	GCNGC	9 cut(s)	6, 9, 87, 160, 404, 576, 733, 1098, 1266
FspBI	CTAG	7 cut(s)	105, 677, 893, 950, 968, 1107, 1205
GluI	GCNGC	9 cut(s)	6, 9, 87, 160, 404, 576, 733, 1098, 1266
HaeIII	GGCC	2 cut(s)	906, 1097
HapII	CCGG	3 cut(s)	132, 814, 1323
Hin1II	CATG	7 cut(s)	17, 671, 902, 911, 936, 1096, 1242
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	6 cut(s)	362, 873, 941, 964, 1110, 1215
HpaII	CCGG	3 cut(s)	132, 814, 1323
HphI	GGTGA	2 cut(s)	163, 305
Hpy166II	GTNNAC	4 cut(s)	171, 223, 981, 1064
Hpy188I	TCNGA	4 cut(s)	525, 760, 1139, 1236
Hpy188III	TCNNGA	2 cut(s)	677, 1107
Hpy8I	GTNNAC	4 cut(s)	171, 223, 981, 1064
HpyAV	CCTTC	6 cut(s)	250, 390, 492, 836, 861, 1374
HpyCH4III	ACNGT	2 cut(s)	197, 227
HpyCH4IV	ACGT	1 cut(s)	1318
HpyCH4V	TGCA	7 cut(s)	8, 275, 281, 488, 578, 614, 735
HpyF10VI	GCNNNNNNNGC	2 cut(s)	713, 1097
HpyF3I	CTNAG	7 cut(s)	113, 231, 442, 524, 620, 759, 1292
HpySE526I	ACGT	1 cut(s)	1318
Hsp92II	CATG	7 cut(s)	17, 671, 902, 911, 936, 1096, 1242
Kzo9I	GATC	4 cut(s)	141, 520, 816, 888
LmnI	GCTCC	2 cut(s)	698, 1120
Lsp1109I	GCAGC	5 cut(s)	20, 415, 562, 719, 1252
LweI	GCATC	3 cut(s)	268, 756, 787
MaeI	CTAG	7 cut(s)	105, 677, 893, 950, 968, 1107, 1205
MaeII	ACGT	1 cut(s)	1318
MaeIII	GTNAC	3 cut(s)	100, 833, 1081
MalI	GATC	4 cut(s)	143, 522, 818, 890
MboI	GATC	4 cut(s)	141, 520, 816, 888
MboII	GAAGA	5 cut(s)	164, 317, 484, 605, 1095
MfeI	CAATTG	1 cut(s)	845
MflI	RGATCY	1 cut(s)	888
MhlI	GDGCHC	2 cut(s)	40, 1125
MluCI	AATT	7 cut(s)	773, 845, 911, 1140, 1177, 1225, 1297
MlyI	GAGTC	2 cut(s)	950, 1104
MmeI	TCCRAC	1 cut(s)	1148
MnlI	CCTC	8 cut(s)	148, 172, 240, 382, 451, 592, 664, 754
Mph1103I	ATGCAT	1 cut(s)	283
MseI	TTAA	4 cut(s)	44, 585, 771, 1073
MslI	CAYNNNNRTG	2 cut(s)	516, 1162
MspA1I	CMGCKG	2 cut(s)	86, 575
MspI	CCGG	3 cut(s)	132, 814, 1323
MspR9I	CCNGG	2 cut(s)	1053, 1323
MunI	CAATTG	1 cut(s)	845
MvaI	CCWGG	1 cut(s)	1053
MwoI	GCNNNNNNNGC	2 cut(s)	713, 1097
NciI	CCSGG	1 cut(s)	1323
NcoI	CCATGG	2 cut(s)	13, 1092
NdeI	CATATG	1 cut(s)	60
NdeII	GATC	4 cut(s)	141, 520, 816, 888
NlaIII	CATG	7 cut(s)	17, 671, 902, 911, 936, 1096, 1242
NlaIV	GGNNCC	1 cut(s)	700
NmuCI	GTSAC	1 cut(s)	833
NsiI	ATGCAT	1 cut(s)	283
NspI	RCATGY	1 cut(s)	902
PciI	ACATGT	1 cut(s)	898
PfeI	GAWTC	4 cut(s)	362, 873, 964, 1215
PfoI	TCCNGGA	1 cut(s)	1321
PkrI	GCNGC	9 cut(s)	7, 10, 88, 161, 405, 577, 734, 1099, 1267
PleI	GAGTC	2 cut(s)	949, 1104
PpsI	GAGTC	2 cut(s)	949, 1104
PscI	ACATGT	1 cut(s)	898
PshAI	GACNNNNGTC	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	1051
PspGI	CCWGG	1 cut(s)	1051
PspN4I	GGNNCC	1 cut(s)	700
PstI	CTGCAG	2 cut(s)	10, 737
PsuI	RGATCY	1 cut(s)	888
RsaI	GTAC	1 cut(s)	1013
RsaNI	GTAC	1 cut(s)	1012
RseI	CAYNNNNRTG	2 cut(s)	516, 1162
SaqAI	TTAA	4 cut(s)	44, 585, 771, 1073
SatI	GCNGC	9 cut(s)	6, 9, 87, 160, 404, 576, 733, 1098, 1266
Sau3AI	GATC	4 cut(s)	141, 520, 816, 888
SchI	GAGTC	2 cut(s)	950, 1104
ScrFI	CCNGG	2 cut(s)	1053, 1323
SduI	GDGCHC	2 cut(s)	40, 1125
SfaNI	GCATC	3 cut(s)	268, 756, 787
SfcI	CTRYAG	4 cut(s)	6, 435, 733, 987
SmiMI	CAYNNNNRTG	2 cut(s)	516, 1162
Sse9I	AATT	7 cut(s)	773, 845, 911, 1140, 1177, 1225, 1297
SsiI	CCGC	7 cut(s)	86, 159, 573, 841, 992, 1098, 1289
SspI	AATATT	2 cut(s)	582, 1247
SspMI	CTAG	7 cut(s)	105, 677, 893, 950, 968, 1107, 1205
StyD4I	CCNGG	2 cut(s)	1051, 1321
StyI	CCWWGG	3 cut(s)	13, 319, 1092
TaaI	ACNGT	2 cut(s)	197, 227
TaiI	ACGT	1 cut(s)	1321
TaqI	TCGA	3 cut(s)	288, 496, 657
TasI	AATT	7 cut(s)	773, 845, 911, 1140, 1177, 1225, 1297
TatI	WGTACW	1 cut(s)	1011
TauI	GCSGC	3 cut(s)	89, 162, 1100
TfiI	GAWTC	4 cut(s)	362, 873, 964, 1215
Tru1I	TTAA	4 cut(s)	44, 585, 771, 1073
Tru9I	TTAA	4 cut(s)	44, 585, 771, 1073
TscAI	CASTG	1 cut(s)	748
TseFI	GTSAC	1 cut(s)	833
TseI	GCWGC	6 cut(s)	5, 8, 403, 575, 732, 1265
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	9 cut(s)	546, 921, 924, 1011, 1021, 1059, 1133, 1219, 1236
TspGWI	ACGGA	2 cut(s)	199, 372
TspRI	CASTG	1 cut(s)	748
XapI	RAATTY	5 cut(s)	773, 911, 1140, 1177, 1225
XbaI	TCTAGA	2 cut(s)	676, 1106
XceI	RCATGY	1 cut(s)	902
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	1063
XspI	CTAG	7 cut(s)	105, 677, 893, 950, 968, 1107, 1205
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.