RchiOBHm_Chr4g0394871

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000555
Physical Location & Seq
Reverse (-)
10615967 .. 10623365
7399 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36734

Sequence Viewer

Length: 2595 bp
ATGAAAGTGGCAGTGATTGGTTCTGGTATTAGTGGTTTGGTCTCAGCCTACGTTCTTGCAAAAGAAGGCGTTGAAGTGGTTCTATATGAGAAAAAAGACTACCTGGGTGGCCATGCCAGGACTGTCACATGTGATGGTGTTGATTTGGACCTTGGTTTCATGGTCTTCAATCATGTGATATATCCAAATATGATGGAGTTCTTTGAGAGCCTTGGAGTTGATATGGAGACATGCGAGATGTCCTTCTCAGTGAGTTTAGATAAAGGACGGGGCTGTGAATGGGGTAGTCGAAATAGTTTCTCAAGCTTGTTTGCAGAAAAGAAGAACTTGTTCAACCCATATTTCTGGAAAATGCTTCAAGAAATCACCAAGTTTAAGCATGATTTGATCAGTTATCTTGAGGTGCTTGAGAGTAACCCAGACATTGTCCGGAATGAAACCTTGGGGCAGTTTATTGAGTCACATCACTACTCTGAACTATTTCGGAAGGCTTACCTTATTCCAATATGTAGTTCAATCTTGTCGTGTCCTTCAGAAGGAGTTATAAGCTTATCAGCTTTCTCTGTGCTTTCGGTTTGTCGCAATTATCAACTACTTCAGCTATTTGGCGGCCCACAGTGGCTTACCGTCAAATGGCGTTCACAGTGTTATGTGAAGAAGGTGAAAGAAGTGTTGGAGACTAGGGGTTGTCAGATAAGAACCGGCTGTGAGGTACATAAAGTTTCCACAACTGATGAGGGTTGCACTGTTTTTACTGGAGATGGTTTTGAGGAAATTTACAATGGATGCATTATTGCTATCCAAGCCCCCAAAGCCGTGAGAATATTAGGAGATCAGGCAACGCCTGATGAACTGAGAATACTTGGCGCCTTCCAACATGTGTACTGTGATATTTTCCTTCATCGTGACAAAACTTTTATGCTCCAAAATCTAGCAGCATGGAGTGCATTAAACTATCTTGGAAGTACTGAAAACAAAGTATGTTTGACATACTGGCTCAATCAGGTTCAGAACCTCAGAGAAACACGTCAACCATATCTTGTGACACTCAATCCAGATCATACACCAAACCACACCTTGCTTAAGTGGTCAACAAGCCATCCAGTCCTATCTGTTGCTGCATCGAAAGCTTCGCTGGAGCTTCCTCATATTCAAGGAAAGAGAGGAATTTGGTTTTGTGGAGCATACCAGGGTTATGGCTTCCATGAGGATGGGCTAAAGGCTGGAGTGGCTGCAGCATATGGTATGCTTGGGAAAGGTTGTGCCCTGTTGGGAAACCCAAAACATATGGCTCTTTCATTGACAGAAACAGTGGCACGCCTATTTGTTACTACATTCCTTAGACATTATATATCTACCGGATGTTTAATCTTATTAGAAGAGGGAGGCACAATGTTGACCTTTGAGGGAAGCAGCAAGGACTGTTCTCTAAAATCCGTTCTCAAAGTTCACAGTCCTCAGTTTTACTGGAAAGTAATGACACTGCAGGCTGATTTAGGCATTGCAGTTGCATATATCAGTGGCGATTTTTCTTTCAATGATAAGGACCGAGGTCTCATTACATTGTTGGTTTTATGTAGAGGATGGTGGCAGCCTTGGTTTTTCACAGCCACTATAGCCTCAGCCAGATACTTCTTTCAGCATGCTTTTACGAAAAATAGTCTTGCACAGGCTCGAAGGAACATTTCTCATCATTATGATCTGAGTAATGAACTATTTTTGCTGTTCTTGGGCGAAACAATGATGTATTCCACTGCAATATTTAAGACAGAAGATGAGGAATTGAATACTGCACAGCTTAGGAAAATCTCTACTCTCATTGATAAGGCTAGAATCGATGAGAACCATGAGGTTCTAGATATTGGTTGTGGTTGGGGAACCTTAGCTATTGAAGCAGTTAAACAAACGGGCTGCAGATACACCGGCATCACTCTATCTGAGGAACAACTTAAATTTGCTGAAAAGAAAGTGAAAGATGCTGGACTTCAGCACCGGATCAAGTTCCTTCTGTGTGACTACCGCCAATTGCCTTGTGACCACAAATATGACAGAATCATTTCTTGCGAGATGTTAGAACATGTAGGCCATGAATTTATGGATGAGTTCTTTTCTTGCTGTGAGTCTTTACTGGCAAAAAATGGGCTTTTTATTCTCCAGTTCACATCTGTGCCGGATGATCGGTATGATGAGTACAGGCAAAATTCAGGCTACTTCATAAAGGAATATATATTTAGCCATGGCCGCTTCTTCTGGATGTCTGGTATGATCTGTTATCAGCCATGTCTACCTTCATTAAGTAGGGTAACATCAGCCATGGCCGCTTCTTCTGGACTCTGTGTGGAGCACTTGGAAAACATTGGAATTCATTATTTCCAAACACTAAGATGTTGGAGAAAGAATTTCTTAGAGAGACAGAGTGAAATACTCGCTCTTGGATTCAATGAAAATTTCATCCGGACATGGGAATATTATTTTGATTATTTTGCTGCTGGTTTCAAGTCATATACACTTGGAAATTACCAGATTGTGTTTTCATGTCCTGGTAATGCTCTCACATTCAACAATCCATATAAGGGTTTCCCTTCAGCATATTGA

Protein Analysis

864

Amino Acids

98.27

Weight (kDa)

6.39

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 2 - 39 4.2e-07 FAD dependent oxidoreductase
NAD_binding_8 PF13450 5 - 71 1.4e-16 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 10 - 281 1.1e-17 Flavin containing amine oxidoreductase
CMAS PF02353 556 - 838 3.2e-70 Mycolic acid cyclopropane synthetase
Methyltransf_23 PF13489 601 - 737 6e-11 Methyltransferase domain
Methyltransf_31 PF13847 613 - 720 8.6e-14 Methyltransferase domain
MTS PF05175 613 - 716 5.9e-07 Methyltransferase small domain
Methyltransf_25 PF13649 618 - 714 1.4e-17 Methyltransferase domain
Methyltransf_11 PF08241 619 - 718 1.7e-14 Methyltransferase domain
Methyltransf_12 PF08242 619 - 716 2.2e-12 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23470 AT3G23470 AT3G23470 AT3G23480 AT3G23480 AT3G23480 AT3G23510 AT3G23530
fragaria_vesca FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04310 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_4g04360 FvH4_7g18110 FvH4_7g18140 FvH4_7g18480 FvH4_7g18481
malus_domestica MD16G1224400.v1.1
prunus_persica Prupe.1G045800_v2.0.a1
pyrus_communis pycom16g18780
rosa_chinensis RchiOBHm_Chr1g0325031 RchiOBHm_Chr1g0362281 RchiOBHm_Chr4g0394761 RchiOBHm_Chr4g0394801 RchiOBHm_Chr4g0394871 RchiOBHm_Chr4g0394921 RchiOBHm_Chr4g0394931 RchiOBHm_Chr4g0394941 RchiOBHm_Chr6g0273911
rosa_laevigata RLG00000009657 RLG00000009659 RLG00000009665 RLG00000013591 RLG00000027657
rosa_multiflora Rmu_sc0005356.1_g000006 Rmu_sc0005802.1_g000020 Rmu_sc0007125.1_g000012 Rmu_ssc0000009.1_g000024
rosa_roxburghii Rroxscaffold_5G00339800 Rroxscaffold_5G00339890 Rroxscaffold_7G00194930
rosa_rugosa Rorug01G0197800 Rorug01G0297000 Rorug01G0297100 Rorug03G0360900.1 Rorug03G0361000.1 Rorug03G0361200.1 Rorug03G0361700.1 Rorug03G0361800.1 Rorug03G0361900.1 Rorug04G0078200
rosa_samantha Rh1AG090300 Rh1AG305900 Rh1DG071500 Rh1DG299200 Rh1DG299300 Rh1DG299400 Rh4AG054900 Rh4BG052700 Rh4CG059500 Rh4CG060100 Rh4CG060200 Rh4DG051300 Rh4DG051800 Rh5BG441600 Rh6AG193200 Rh6CG196400
rosa_wichuraiana Rw1G027140 Rw4G003970 Rw4G004380 Rw4G004420 Rw4G004440 Rw6G016840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 545
AccB1I GGYRCC 1 cut(s) 866
AccI GTMKAC 1 cut(s) 2284
AccIII TCCGGA 2 cut(s) 429, 2454
AciI CCGC 4 cut(s) 609, 2020, 2242, 2319
AclWI GGATC 1 cut(s) 2003
AcoI YGGCCR 3 cut(s) 109, 2239, 2316
AcsI RAATTY 8 cut(s) 774, 1167, 1952, 2090, 2200, 2361, 2398, 2446
AcuI CTGAAG 4 cut(s) 516, 581, 1970, 2568
AcyI GRCGYC 1 cut(s) 867
AfaI GTAC 4 cut(s) 714, 884, 967, 2192
AfiI CCNNNNNNNGG 4 cut(s) 536, 633, 2461, 2573
AflII CTTAAG 1 cut(s) 1082
AflIII ACRYGT 4 cut(s) 128, 877, 1025, 2077
AjiI CACGTC 1 cut(s) 1028
AjnI CCWGG 4 cut(s) 102, 116, 1188, 2539
AjuI GAANNNNNNNTTGG 6 cut(s) 425, 457, 496, 528, 656, 688
AleI CACNNNNGTG 1 cut(s) 2165
AluBI AGCT 8 cut(s) 306, 549, 557, 601, 1130, 1141, 1798, 1886
AluI AGCT 8 cut(s) 306, 549, 557, 601, 1130, 1141, 1798, 1886
Alw21I GWGCWC 1 cut(s) 2346
Alw26I GTCTC 5 cut(s) 46, 221, 671, 1559, 2404
AlwI GGATC 1 cut(s) 2003
Aor13HI TCCGGA 2 cut(s) 429, 2454
AoxI GGCC 5 cut(s) 109, 610, 2083, 2239, 2316
ApeKI GCWGC 8 cut(s) 935, 1118, 1232, 1235, 1413, 1591, 1911, 2486
ApoI RAATTY 8 cut(s) 774, 1167, 1952, 2090, 2200, 2361, 2398, 2446
Asp700I GAANNNNTTC 4 cut(s) 78, 329, 480, 2056
AspLEI GCGC 1 cut(s) 869
AspS9I GGNCC 3 cut(s) 148, 611, 1546
AsuHPI GGTGA 2 cut(s) 358, 673
AvaII GGWCC 2 cut(s) 148, 1546
BaeGI GKGCMC 1 cut(s) 1267
BalI TGGCCA 1 cut(s) 111
BanI GGYRCC 1 cut(s) 866
BbsI GAAGAC 1 cut(s) 157
Bbv12I GWGCWC 1 cut(s) 2346
BbvCI CCTCAGC 1 cut(s) 1621
BbvI GCAGC 8 cut(s) 947, 1105, 1219, 1247, 1425, 1603, 1898, 2473
BccI CCATC 6 cut(s) 128, 187, 755, 1107, 1205, 1578
BceAI ACGGC 1 cut(s) 800
BciT130I CCWGG 4 cut(s) 104, 118, 1190, 2541
BclI TGATCA 1 cut(s) 387
BcoDI GTCTC 5 cut(s) 46, 221, 671, 1559, 2404
BfaI CTAG 4 cut(s) 681, 932, 1830, 1856
BfmI CTRYAG 4 cut(s) 1233, 1484, 1614, 1912
BfoI RGCGCY 1 cut(s) 870
BfrI CTTAAG 1 cut(s) 1082
BmcAI AGTACT 1 cut(s) 967
Bme1390I CCNGG 4 cut(s) 104, 118, 1190, 2541
Bme18I GGWCC 2 cut(s) 148, 1546
BmgBI CACGTC 1 cut(s) 1028
BmgT120I GGNCC 3 cut(s) 148, 611, 1546
BmiI GGNNCC 2 cut(s) 868, 1879
BmrFI CCNGG 4 cut(s) 104, 118, 1190, 2541
BmsI GCATC 4 cut(s) 776, 1130, 1935, 1966
BoxI GACNNNNGTC 1 cut(s) 1551
BpiI GAAGAC 1 cut(s) 157
BpmI CTGGAG 4 cut(s) 777, 1157, 1245, 2138
Bpu10I CCTNAGC 3 cut(s) 1621, 1799, 1882
BpuEI CTTGAG 3 cut(s) 286, 419, 428
Bsa29I ATCGAT 1 cut(s) 1836
BsaHI GRCGYC 1 cut(s) 867
BsaI GGTCTC 2 cut(s) 46, 1559
BsaJI CCNNGG 9 cut(s) 103, 151, 211, 441, 1189, 1549, 1595, 2236, 2313
BsaWI WCCGGW 4 cut(s) 429, 1358, 1992, 2454
Bsc4I CCNNNNNNNGG 4 cut(s) 536, 633, 2461, 2573
Bse118I RCCGGY 2 cut(s) 701, 1922
Bse1I ACTGG 6 cut(s) 760, 998, 1103, 1472, 2133, 2155
Bse3DI GCAATG 1 cut(s) 1500
BseAI TCCGGA 2 cut(s) 429, 2454
BseBI CCWGG 4 cut(s) 104, 118, 1190, 2541
BseCI ATCGAT 1 cut(s) 1836
BseDI CCNNGG 9 cut(s) 103, 151, 211, 441, 1189, 1549, 1595, 2236, 2313
BseGI GGATG 9 cut(s) 791, 1099, 1216, 1367, 1589, 2104, 2179, 2259, 2451
BseLI CCNNNNNNNGG 4 cut(s) 536, 633, 2461, 2573
BseMI GCAATG 1 cut(s) 1500
BseMII CTCAG 8 cut(s) 57, 261, 845, 1030, 1472, 1635, 1694, 1929
BseNI ACTGG 6 cut(s) 760, 998, 1103, 1472, 2133, 2155
BseSI GKGCMC 1 cut(s) 1267
BseXI GCAGC 8 cut(s) 947, 1105, 1219, 1247, 1425, 1603, 1898, 2473
BsgI GTGCAG 1 cut(s) 1776
BshFI GGCC 5 cut(s) 111, 612, 2085, 2241, 2318
BshNI GGYRCC 1 cut(s) 866
BshVI ATCGAT 1 cut(s) 1836
BsiHKAI GWGCWC 1 cut(s) 2346
BsiSI CCGG 7 cut(s) 430, 702, 1359, 1923, 1993, 2171, 2455
BslI CCNNNNNNNGG 4 cut(s) 536, 633, 2461, 2573
BsmAI GTCTC 5 cut(s) 46, 221, 671, 1559, 2404
BsnI GGCC 5 cut(s) 111, 612, 2085, 2241, 2318
Bso31I GGTCTC 2 cut(s) 46, 1559
Bsp1286I GDGCHC 2 cut(s) 1267, 2346
Bsp13I TCCGGA 2 cut(s) 429, 2454
Bsp143I GATC 7 cut(s) 387, 832, 1057, 1699, 1995, 2176, 2265
Bsp19I CCATGG 2 cut(s) 2236, 2313
BspACI CCGC 4 cut(s) 609, 2020, 2242, 2319
BspANI GGCC 5 cut(s) 111, 612, 2085, 2241, 2318
BspCNI CTCAG 8 cut(s) 56, 260, 846, 1029, 1471, 1634, 1695, 1930
BspDI ATCGAT 1 cut(s) 1836
BspEI TCCGGA 2 cut(s) 429, 2454
BspLI GGNNCC 2 cut(s) 868, 1879
BspMAI CTGCAG 3 cut(s) 1237, 1488, 1916
BspPI GGATC 1 cut(s) 2003
BspT107I GGYRCC 1 cut(s) 866
BspTI CTTAAG 1 cut(s) 1082
BspTNI GGTCTC 2 cut(s) 46, 1559
BsrDI GCAATG 1 cut(s) 1500
BsrFI RCCGGY 2 cut(s) 701, 1922
BsrI ACTGG 6 cut(s) 760, 998, 1103, 1472, 2133, 2155
BssAI RCCGGY 2 cut(s) 701, 1922
BssECI CCNNGG 9 cut(s) 103, 151, 211, 441, 1189, 1549, 1595, 2236, 2313
BssMI GATC 7 cut(s) 387, 832, 1057, 1699, 1995, 2176, 2265
BssNI GRCGYC 1 cut(s) 867
BssT1I CCWWGG 6 cut(s) 151, 211, 441, 1595, 2236, 2313
Bst2UI CCWGG 4 cut(s) 104, 118, 1190, 2541
Bst4CI ACNGT 9 cut(s) 124, 618, 628, 645, 748, 887, 1312, 1424, 1454
Bst6I CTCTTC 1 cut(s) 1374
BstACI GRCGYC 1 cut(s) 867
BstAFI CTTAAG 1 cut(s) 1082
BstAPI GCANNNNNTGC 1 cut(s) 944
BstC8I GCNNGC 3 cut(s) 1318, 1488, 1644
BstDSI CCRYGG 2 cut(s) 2236, 2313
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 9 cut(s) 791, 1099, 1216, 1367, 1589, 2104, 2179, 2259, 2451
BstH2I RGCGCY 1 cut(s) 870
BstHHI GCGC 1 cut(s) 869
BstKTI GATC 7 cut(s) 390, 835, 1060, 1702, 1998, 2179, 2268
BstMAI GTCTC 5 cut(s) 46, 221, 671, 1559, 2404
BstMBI GATC 7 cut(s) 387, 832, 1057, 1699, 1995, 2176, 2265
BstMWI GCNNNNNNNGC 9 cut(s) 803, 812, 944, 1127, 1229, 1616, 1892, 2241, 2318
BstNI CCWGG 4 cut(s) 104, 118, 1190, 2541
BstNSI RCATGY 5 cut(s) 132, 234, 881, 1646, 2081
BstPAI GACNNNNGTC 1 cut(s) 1551
BstSCI CCNGG 4 cut(s) 102, 116, 1188, 2539
BstSFI CTRYAG 4 cut(s) 1233, 1484, 1614, 1912
BstSLI GKGCMC 1 cut(s) 1267
BstV1I GCAGC 8 cut(s) 947, 1105, 1219, 1247, 1425, 1603, 1898, 2473
BstV2I GAAGAC 1 cut(s) 157
BstXI CCANNNNNNTGG 3 cut(s) 345, 1196, 1211
Bsu15I ATCGAT 1 cut(s) 1836
BsuRI GGCC 5 cut(s) 111, 612, 2085, 2241, 2318
BsuTUI ATCGAT 1 cut(s) 1836
BtgI CCRYGG 2 cut(s) 2236, 2313
BtrI CACGTC 1 cut(s) 1028
BtsCI GGATG 9 cut(s) 791, 1099, 1216, 1367, 1589, 2104, 2179, 2259, 2451
BtsI GCAGTG 3 cut(s) 18, 1481, 1752
BtsIMutI CAGTG 9 cut(s) 18, 255, 623, 650, 744, 1317, 1481, 1525, 1752
Cac8I GCNNGC 3 cut(s) 1318, 1488, 1644
CfoI GCGC 1 cut(s) 869
Cfr10I RCCGGY 2 cut(s) 701, 1922
Cfr13I GGNCC 3 cut(s) 148, 611, 1546
ClaI ATCGAT 1 cut(s) 1836
Csp6I GTAC 4 cut(s) 713, 883, 966, 2191
CviQI GTAC 4 cut(s) 713, 883, 966, 2191
DinI GGCGCC 1 cut(s) 868
DpnI GATC 7 cut(s) 389, 834, 1059, 1701, 1997, 2178, 2267
DpnII GATC 7 cut(s) 387, 832, 1057, 1699, 1995, 2176, 2265
EaeI YGGCCR 3 cut(s) 109, 2239, 2316
Eam1104I CTCTTC 1 cut(s) 1374
EarI CTCTTC 1 cut(s) 1374
Eco130I CCWWGG 6 cut(s) 151, 211, 441, 1595, 2236, 2313
Eco31I GGTCTC 2 cut(s) 46, 1559
Eco47I GGWCC 2 cut(s) 148, 1546
Eco57I CTGAAG 4 cut(s) 516, 581, 1970, 2568
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoRI GAATTC 1 cut(s) 2361
EcoRII CCWGG 4 cut(s) 102, 116, 1188, 2539
EcoT14I CCWWGG 6 cut(s) 151, 211, 441, 1595, 2236, 2313
EcoT22I ATGCAT 1 cut(s) 791
EgeI GGCGCC 1 cut(s) 868
EheI GGCGCC 1 cut(s) 868
ErhI CCWWGG 6 cut(s) 151, 211, 441, 1595, 2236, 2313
FalI AAGNNNNNCTT 4 cut(s) 311, 343, 2387, 2419
FauNDI CATATG 2 cut(s) 1240, 1287
FbaI TGATCA 1 cut(s) 387
FblI GTMKAC 1 cut(s) 2284
FokI GGATG 9 cut(s) 798, 1086, 1223, 1374, 1596, 2111, 2186, 2266, 2438
FspBI CTAG 4 cut(s) 681, 932, 1830, 1856
GlaI GCGC 1 cut(s) 868
GsuI CTGGAG 4 cut(s) 777, 1157, 1245, 2138
HaeII RGCGCY 1 cut(s) 870
HaeIII GGCC 5 cut(s) 111, 612, 2085, 2241, 2318
HapII CCGG 7 cut(s) 430, 702, 1359, 1923, 1993, 2171, 2455
HhaI GCGC 1 cut(s) 869
Hin1I GRCGYC 1 cut(s) 867
Hin6I GCGC 1 cut(s) 867
HinP1I GCGC 1 cut(s) 867
HincII GTYRAC 3 cut(s) 1031, 1092, 1398
HindII GTYRAC 3 cut(s) 1031, 1092, 1398
HindIII AAGCTT 3 cut(s) 304, 547, 1128
HinfI GANTC 6 cut(s) 458, 1833, 2052, 2120, 2331, 2436
HpaII CCGG 7 cut(s) 430, 702, 1359, 1923, 1993, 2171, 2455
HphI GGTGA 2 cut(s) 358, 673
Hpy166II GTNNAC 8 cut(s) 641, 883, 1031, 1092, 1398, 1450, 2160, 2285
Hpy188I TCNGA 8 cut(s) 475, 486, 535, 693, 1011, 1019, 1704, 1939
Hpy8I GTNNAC 8 cut(s) 641, 883, 1031, 1092, 1398, 1450, 2160, 2285
HpyCH4III ACNGT 9 cut(s) 124, 618, 628, 645, 748, 887, 1312, 1424, 1454
HpyCH4IV ACGT 2 cut(s) 51, 1027
HpyF10VI GCNNNNNNNGC 9 cut(s) 803, 812, 944, 1127, 1229, 1616, 1892, 2241, 2318
HpySE526I ACGT 2 cut(s) 51, 1027
Hsp92I GRCGYC 1 cut(s) 867
HspAI GCGC 1 cut(s) 867
KasI GGCGCC 1 cut(s) 866
Kpn2I TCCGGA 2 cut(s) 429, 2454
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 7 cut(s) 387, 832, 1057, 1699, 1995, 2176, 2265
LmnI GCTCC 4 cut(s) 927, 1138, 1181, 2341
Lsp1109I GCAGC 8 cut(s) 947, 1105, 1219, 1247, 1425, 1603, 1898, 2473
LweI GCATC 4 cut(s) 776, 1130, 1935, 1966
MaeI CTAG 4 cut(s) 681, 932, 1830, 1856
MaeII ACGT 2 cut(s) 51, 1027
MaeIII GTNAC 9 cut(s) 124, 413, 459, 905, 1042, 1327, 2012, 2033, 2302
MalI GATC 7 cut(s) 389, 834, 1059, 1701, 1997, 2178, 2267
MboI GATC 7 cut(s) 387, 832, 1057, 1699, 1995, 2176, 2265
MboII GAAGA 7 cut(s) 157, 334, 667, 1391, 1784, 2239, 2316
MfeI CAATTG 1 cut(s) 2024
MhlI GDGCHC 2 cut(s) 1267, 2346
MlsI TGGCCA 1 cut(s) 111
MluNI TGGCCA 1 cut(s) 111
Mly113I GGCGCC 1 cut(s) 867
MlyI GAGTC 3 cut(s) 467, 2129, 2325
MmeI TCCRAC 3 cut(s) 654, 898, 2369
Mox20I TGGCCA 1 cut(s) 111
Mph1103I ATGCAT 1 cut(s) 791
MroI TCCGGA 2 cut(s) 429, 2454
MroXI GAANNNNTTC 4 cut(s) 78, 329, 480, 2056
MscI TGGCCA 1 cut(s) 111
MseI TTAA 8 cut(s) 375, 950, 1083, 1367, 1764, 1899, 1950, 2294
MslI CAYNNNNRTG 5 cut(s) 1209, 1695, 2043, 2165, 2383
Msp20I TGGCCA 1 cut(s) 111
MspCI CTTAAG 1 cut(s) 1082
MspI CCGG 7 cut(s) 430, 702, 1359, 1923, 1993, 2171, 2455
MspR9I CCNGG 4 cut(s) 104, 118, 1190, 2541
MunI CAATTG 1 cut(s) 2024
MvaI CCWGG 4 cut(s) 104, 118, 1190, 2541
MwoI GCNNNNNNNGC 9 cut(s) 803, 812, 944, 1127, 1229, 1616, 1892, 2241, 2318
NarI GGCGCC 1 cut(s) 867
NcoI CCATGG 2 cut(s) 2236, 2313
NdeI CATATG 2 cut(s) 1240, 1287
NdeII GATC 7 cut(s) 387, 832, 1057, 1699, 1995, 2176, 2265
NlaIV GGNNCC 2 cut(s) 868, 1879
NmuCI GTSAC 6 cut(s) 124, 459, 905, 1042, 2012, 2033
NsiI ATGCAT 1 cut(s) 791
NspI RCATGY 5 cut(s) 132, 234, 881, 1646, 2081
OliI CACNNNNGTG 1 cut(s) 2165
PaeI GCATGC 1 cut(s) 1646
PciI ACATGT 3 cut(s) 128, 877, 2077
PdmI GAANNNNTTC 4 cut(s) 78, 329, 480, 2056
PfeI GAWTC 3 cut(s) 1833, 2052, 2436
PflFI GACNNNGTC 1 cut(s) 425
PleI GAGTC 3 cut(s) 466, 2128, 2325
PluTI GGCGCC 1 cut(s) 870
PpsI GAGTC 3 cut(s) 466, 2128, 2325
PscI ACATGT 3 cut(s) 128, 877, 2077
PshAI GACNNNNGTC 1 cut(s) 1551
PsiI TTATAA 1 cut(s) 545
Psp6I CCWGG 4 cut(s) 102, 116, 1188, 2539
PspGI CCWGG 4 cut(s) 102, 116, 1188, 2539
PspN4I GGNNCC 2 cut(s) 868, 1879
PspPI GGNCC 3 cut(s) 148, 611, 1546
PsrI GAACNNNNNNTAC 2 cut(s) 843, 875
PstI CTGCAG 3 cut(s) 1237, 1488, 1916
PsyI GACNNNGTC 1 cut(s) 425
RsaI GTAC 4 cut(s) 714, 884, 967, 2192
RsaNI GTAC 4 cut(s) 713, 883, 966, 2191
RseI CAYNNNNRTG 5 cut(s) 1209, 1695, 2043, 2165, 2383
SaqAI TTAA 8 cut(s) 375, 950, 1083, 1367, 1764, 1899, 1950, 2294
Sau3AI GATC 7 cut(s) 387, 832, 1057, 1699, 1995, 2176, 2265
Sau96I GGNCC 3 cut(s) 148, 611, 1546
ScaI AGTACT 1 cut(s) 967
SchI GAGTC 3 cut(s) 467, 2129, 2325
ScrFI CCNGG 4 cut(s) 104, 118, 1190, 2541
SduI GDGCHC 2 cut(s) 1267, 2346
SfaNI GCATC 4 cut(s) 776, 1130, 1935, 1966
SfcI CTRYAG 4 cut(s) 1233, 1484, 1614, 1912
SfoI GGCGCC 1 cut(s) 868
SinI GGWCC 2 cut(s) 148, 1546
SmiMI CAYNNNNRTG 5 cut(s) 1209, 1695, 2043, 2165, 2383
SmlI CTYRAG 4 cut(s) 301, 398, 407, 1082
SmoI CTYRAG 4 cut(s) 301, 398, 407, 1082
SphI GCATGC 1 cut(s) 1646
SsiI CCGC 4 cut(s) 609, 2020, 2242, 2319
SspDI GGCGCC 1 cut(s) 866
SspI AATATT 3 cut(s) 825, 1761, 2468
SspMI CTAG 4 cut(s) 681, 932, 1830, 1856
StyD4I CCNGG 4 cut(s) 102, 116, 1188, 2539
StyI CCWWGG 6 cut(s) 151, 211, 441, 1595, 2236, 2313
TaaI ACNGT 9 cut(s) 124, 618, 628, 645, 748, 887, 1312, 1424, 1454
TaiI ACGT 2 cut(s) 54, 1030
TaqI TCGA 4 cut(s) 289, 1124, 1675, 1836
TaqII GACCGA 1 cut(s) 1563
TatI WGTACW 3 cut(s) 882, 965, 2190
TauI GCSGC 3 cut(s) 612, 2244, 2321
TfiI GAWTC 3 cut(s) 1833, 2052, 2436
Tru1I TTAA 8 cut(s) 375, 950, 1083, 1367, 1764, 1899, 1950, 2294
Tru9I TTAA 8 cut(s) 375, 950, 1083, 1367, 1764, 1899, 1950, 2294
TscAI CASTG 9 cut(s) 18, 255, 623, 650, 751, 1317, 1488, 1525, 1759
TseFI GTSAC 6 cut(s) 124, 459, 905, 1042, 2012, 2033
TseI GCWGC 8 cut(s) 935, 1118, 1232, 1235, 1413, 1591, 1911, 2486
Tsp45I GTSAC 6 cut(s) 124, 459, 905, 1042, 2012, 2033
TspGWI ACGGA 1 cut(s) 1426
TspRI CASTG 9 cut(s) 18, 255, 623, 650, 751, 1317, 1488, 1525, 1759
Tth111I GACNNNGTC 1 cut(s) 425
Vha464I CTTAAG 1 cut(s) 1082
VpaK11BI GGWCC 2 cut(s) 148, 1546
XagI CCTNNNNNAGG 1 cut(s) 534
XapI RAATTY 8 cut(s) 774, 1167, 1952, 2090, 2200, 2361, 2398, 2446
XbaI TCTAGA 1 cut(s) 1855
XceI RCATGY 5 cut(s) 132, 234, 881, 1646, 2081
XmiI GTMKAC 1 cut(s) 2284
XmnI GAANNNNTTC 4 cut(s) 78, 329, 480, 2056
XspI CTAG 4 cut(s) 681, 932, 1830, 1856
ZrmI AGTACT 1 cut(s) 967
Zsp2I ATGCAT 1 cut(s) 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.