Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Forward (+)

20386597 .. 20388860

Gene Structure 2264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGAAGCTCGGATTTTGCAGTCTTCTTCTTCCTGTTATTCGTCTCTTTACGCTGTCAATCGATCCCGGTTCTCTTCTGTGTCATCTCCGAAACCTTTCTCCGTCAGCTTTGCTCAGACGACGAGAACAAGGACTCGTGTATTATCCATGTCGAAGAAAGATGGTCGCACTGATAAAGATGATGACACTGATAGTCTCAATTACAAAGATTCTGGTGTTGATATCGATGCTGGTGCTGAGCTTGTTAAACGAATCGCAAAGATGGCTCCTGGAATTGGTGGATTTGGTGGTCTCTTTCCATTAGGTGATAGTTATCTTGTAGCTGGTACGGATGGTGTAGGGACTAAATTGAAATTGGCATTTGAAACTGGAATTCATGACACCATTGGAATCGACTTGGTTGCTATGAGTGTGAATGATATTATTACTTCTGGTGCAAAGCCTCTGTTTTTCCTTGATTACTTTGCTACTAGTCGTCTTGATGTAGACCTTGCTGAAAAGGTCATTAAAGGGATTGTTGAAGGTTGTCGGCAATCGGAATGTGCTCTCTTAGGGGGAGAGACTGCAGAGATGCCTGACTTTTATGCAGAGGGCGAGTACGATCTAAGTGGGTTTGCAGTAGGCATAGTAAAGAAAACTTCAGTTATCAACGGAAAAAACATTGTGGCCGGTGATGTTCTTATTGGCCTCCCGTCTAGTGGTGTTCATTCCAATGGTTTTTCTCTAGTAAGAAGGGTATTGGCTCGAAGCAATCTTTCGCTGAAGGATGCGCTTCCAGGTGGATCAAGTACCCTTGGTGATGCTCTAATGGCACCCACTGTCATTTACGTGAAACAGGTACTTGATATGATAGAAAAAGGAGGAGTGAAAGGTTTAGCTCATATCACAGGCGGAGGTTTCACAGACAACATTCCCCGAGTCTTCCCGGACGGTTTGGGTGCTGTTATTCACACCGATGCTTGGGAACTTCCACCGTTGTTCAAGTGGATTCAACAGACTGGGAGAATAGAAGACAGTGAGATGAGAAGGACGTTTAACCTGGGGATAGGGATGGTTATGGTGGTTAGTCCAGAGGCAGCTTCACGAATACTAGAAGAAGTCAAGAATGGAGACTATGTTGCGTATCGCGTAGGAGAGGTTGTCAACGGTGAAGGCGTAAGCTATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

389

Amino Acids

41.5

Weight (kDa)

5.32

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS	PF00586	102 - 210	6.7e-24	AIR synthase related protein, N-terminal domain
AIRS_C	PF02769	223 - 386	3.2e-36	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	811
AccI	GTMKAC	1 cut(s)	486
AccII	CGCG	1 cut(s)	1128
AciI	CCGC	1 cut(s)	891
AclWI	GGATC	2 cut(s)	57, 790
AcoI	YGGCCR	1 cut(s)	666
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	2 cut(s)	624, 782
AfaI	GTAC	4 cut(s)	328, 599, 790, 840
AfiI	CCNNNNNNNGG	3 cut(s)	275, 698, 960
AgsI	TTSAA	5 cut(s)	352, 365, 521, 982, 992
AhlI	ACTAGT	1 cut(s)	470
AjnI	CCWGG	3 cut(s)	268, 775, 1038
AluBI	AGCT	7 cut(s)	8, 108, 241, 323, 878, 1079, 1161
AluI	AGCT	7 cut(s)	8, 108, 241, 323, 878, 1079, 1161
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	5 cut(s)	48, 200, 296, 554, 1104
AlwI	GGATC	2 cut(s)	57, 790
Ama87I	CYCGRG	1 cut(s)	915
AoxI	GGCC	2 cut(s)	666, 685
ApeKI	GCWGC	1 cut(s)	1076
ApoI	RAATTY	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	772
AsuC2I	CCSGG	2 cut(s)	67, 926
AsuHPI	GGTGA	4 cut(s)	317, 683, 809, 1160
AvaI	CYCGRG	1 cut(s)	915
BanI	GGYRCC	1 cut(s)	811
BauI	CACGAG	1 cut(s)	135
BbsI	GAAGAC	3 cut(s)	15, 913, 1017
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	1 cut(s)	1088
BccI	CCATC	4 cut(s)	155, 256, 326, 1045
BcgI	CGANNNNNNTGC	4 cut(s)	215, 249, 383, 417
BciT130I	CCWGG	3 cut(s)	270, 777, 1040
BcnI	CCSGG	2 cut(s)	67, 926
BcoDI	GTCTC	5 cut(s)	48, 200, 296, 554, 1104
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	4 cut(s)	471, 696, 725, 1091
BfmI	CTRYAG	1 cut(s)	564
BisI	GCNGC	1 cut(s)	1077
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	1078
Bme1390I	CCNGG	5 cut(s)	67, 270, 777, 926, 1040
BmeT110I	CYCGRG	1 cut(s)	915
BmiI	GGNNCC	2 cut(s)	267, 813
BmrFI	CCNGG	5 cut(s)	67, 270, 777, 926, 1040
BmrI	ACTGGG	1 cut(s)	1008
BmsI	GCATC	5 cut(s)	217, 561, 757, 790, 946
BmuI	ACTGGG	1 cut(s)	1008
BpiI	GAAGAC	3 cut(s)	15, 913, 1017
Bpu1102I	GCTNAGC	1 cut(s)	237
BpuMI	CCSGG	2 cut(s)	67, 926
Bsa29I	ATCGAT	2 cut(s)	61, 225
BsaAI	YACGTR	1 cut(s)	829
BsaBI	GATNNNNATC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	793, 1039
BsaXI	ACNNNNNCTCC	4 cut(s)	1101, 1125, 1131, 1155
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 698, 960
Bse118I	RCCGGY	1 cut(s)	668
Bse1I	ACTGG	2 cut(s)	373, 1003
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	3 cut(s)	270, 777, 1040
BseCI	ATCGAT	2 cut(s)	61, 225
BseDI	CCNNGG	2 cut(s)	793, 1039
BseGI	GGATG	3 cut(s)	337, 772, 1056
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	3 cut(s)	275, 698, 960
BseMII	CTCAG	2 cut(s)	128, 228
BseNI	ACTGG	2 cut(s)	373, 1003
BseRI	GAGGAG	1 cut(s)	876
BseXI	GCAGC	1 cut(s)	1088
Bsh1236I	CGCG	1 cut(s)	1128
BshFI	GGCC	2 cut(s)	668, 687
BshNI	GGYRCC	1 cut(s)	811
BshVI	ATCGAT	2 cut(s)	61, 225
BsiHKAI	GWGCWC	1 cut(s)	547
BsiHKCI	CYCGRG	1 cut(s)	915
BsiSI	CCGG	3 cut(s)	67, 669, 926
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	3 cut(s)	275, 698, 960
BsmAI	GTCTC	5 cut(s)	48, 200, 296, 554, 1104
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	2 cut(s)	668, 687
Bso31I	GGTCTC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	915
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	3 cut(s)	62, 601, 782
Bsp1720I	GCTNAGC	1 cut(s)	237
BspACI	CCGC	1 cut(s)	891
BspANI	GGCC	2 cut(s)	668, 687
BspCNI	CTCAG	2 cut(s)	127, 229
BspDI	ATCGAT	2 cut(s)	61, 225
BspFNI	CGCG	1 cut(s)	1128
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	267, 813
BspMAI	CTGCAG	1 cut(s)	568
BspPI	GGATC	2 cut(s)	57, 790
BspT107I	GGYRCC	1 cut(s)	811
BspTNI	GGTCTC	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	668
BsrI	ACTGG	2 cut(s)	373, 1003
BssAI	RCCGGY	1 cut(s)	668
BssECI	CCNNGG	2 cut(s)	793, 1039
BssMI	GATC	3 cut(s)	62, 601, 782
BssSI	CACGAG	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	793
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	3 cut(s)	270, 777, 1040
Bst4CI	ACNGT	5 cut(s)	820, 932, 975, 1016, 1148
Bst6I	CTCTTC	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	829
BstDEI	CTNAG	4 cut(s)	114, 237, 550, 605
BstF5I	GGATG	3 cut(s)	337, 772, 1056
BstFNI	CGCG	1 cut(s)	1128
BstHHI	GCGC	1 cut(s)	772
BstKTI	GATC	3 cut(s)	65, 604, 785
BstMAI	GTCTC	5 cut(s)	48, 200, 296, 554, 1104
BstMBI	GATC	3 cut(s)	62, 601, 782
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 809
BstNI	CCWGG	3 cut(s)	270, 777, 1040
BstSCI	CCNGG	5 cut(s)	65, 268, 775, 924, 1038
BstSFI	CTRYAG	1 cut(s)	564
BstUI	CGCG	1 cut(s)	1128
BstV1I	GCAGC	1 cut(s)	1088
BstV2I	GAAGAC	3 cut(s)	15, 913, 1017
Bsu15I	ATCGAT	2 cut(s)	61, 225
BsuRI	GGCC	2 cut(s)	668, 687
BsuTUI	ATCGAT	2 cut(s)	61, 225
BtsCI	GGATG	3 cut(s)	337, 772, 1056
BtsIMutI	CAGTG	4 cut(s)	168, 186, 816, 1021
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	772
Cfr10I	RCCGGY	1 cut(s)	668
ClaI	ATCGAT	2 cut(s)	61, 225
Csp6I	GTAC	4 cut(s)	327, 598, 789, 839
CviAII	CATG	2 cut(s)	148, 377
CviQI	GTAC	4 cut(s)	327, 598, 789, 839
DdeI	CTNAG	4 cut(s)	114, 237, 550, 605
DpnI	GATC	3 cut(s)	64, 603, 784
DpnII	GATC	3 cut(s)	62, 601, 782
EaeI	YGGCCR	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	906
Eco130I	CCWWGG	1 cut(s)	793
Eco31I	GGTCTC	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	223
Eco57I	CTGAAG	2 cut(s)	624, 782
Eco88I	CYCGRG	1 cut(s)	915
EcoRI	GAATTC	1 cut(s)	372
EcoRII	CCWGG	3 cut(s)	268, 775, 1038
EcoRV	GATATC	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	793
ErhI	CCWWGG	1 cut(s)	793
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	2 cut(s)	151, 380
FaiI	YATR	9 cut(s)	149, 378, 407, 585, 626, 848, 882, 1058, 1116
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	2 cut(s)	147, 376
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	1 cut(s)	1077
FokI	GGATG	3 cut(s)	344, 779, 1063
Fsp4HI	GCNGC	1 cut(s)	1077
FspBI	CTAG	4 cut(s)	471, 696, 725, 1091
GlaI	GCGC	1 cut(s)	771
GluI	GCNGC	1 cut(s)	1077
HaeIII	GGCC	2 cut(s)	668, 687
HapII	CCGG	3 cut(s)	67, 669, 926
HhaI	GCGC	1 cut(s)	772
Hin1II	CATG	2 cut(s)	151, 380
Hin6I	GCGC	1 cut(s)	770
HinP1I	GCGC	1 cut(s)	770
HincII	GTYRAC	1 cut(s)	1144
HindII	GTYRAC	1 cut(s)	1144
HinfI	GANTC	6 cut(s)	133, 209, 252, 390, 918, 988
HpaII	CCGG	3 cut(s)	67, 669, 926
HphI	GGTGA	4 cut(s)	317, 683, 809, 1160
Hpy166II	GTNNAC	2 cut(s)	487, 1144
Hpy188I	TCNGA	4 cut(s)	12, 90, 117, 538
Hpy188III	TCNNGA	5 cut(s)	377, 479, 1070, 1083, 1102
Hpy8I	GTNNAC	2 cut(s)	487, 1144
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	5 cut(s)	515, 726, 757, 1020, 1145
HpyCH4III	ACNGT	5 cut(s)	820, 932, 975, 1016, 1148
HpyCH4IV	ACGT	2 cut(s)	828, 1031
HpyCH4V	TGCA	5 cut(s)	19, 437, 566, 587, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 809
HpyF3I	CTNAG	4 cut(s)	114, 237, 550, 605
HpySE526I	ACGT	2 cut(s)	828, 1031
Hsp92II	CATG	2 cut(s)	151, 380
HspAI	GCGC	1 cut(s)	770
Kzo9I	GATC	3 cut(s)	62, 601, 782
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	1 cut(s)	1088
LweI	GCATC	5 cut(s)	217, 561, 757, 790, 946
MaeI	CTAG	4 cut(s)	471, 696, 725, 1091
MaeII	ACGT	2 cut(s)	828, 1031
MalI	GATC	3 cut(s)	64, 603, 784
MboI	GATC	3 cut(s)	62, 601, 782
MboII	GAAGA	8 cut(s)	15, 18, 21, 66, 166, 913, 1022, 1106
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	5 cut(s)	199, 273, 347, 353, 372
MlyI	GAGTC	2 cut(s)	127, 927
MnlI	CCTC	7 cut(s)	453, 583, 698, 854, 887, 1066, 1129
MroXI	GAANNNNTTC	1 cut(s)	95
MseI	TTAA	3 cut(s)	246, 507, 1035
MslI	CAYNNNNRTG	3 cut(s)	711, 827, 954
MspI	CCGG	3 cut(s)	67, 669, 926
MspR9I	CCNGG	5 cut(s)	67, 270, 777, 926, 1040
MvaI	CCWGG	3 cut(s)	270, 777, 1040
MvnI	CGCG	1 cut(s)	1128
MwoI	GCNNNNNNNGC	2 cut(s)	263, 809
NciI	CCSGG	2 cut(s)	67, 926
NdeII	GATC	3 cut(s)	62, 601, 782
NlaIII	CATG	2 cut(s)	151, 380
NlaIV	GGNNCC	2 cut(s)	267, 813
PagI	TCATGA	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	1152
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	4 cut(s)	209, 252, 390, 988
PfoI	TCCNGGA	2 cut(s)	268, 924
PkrI	GCNGC	1 cut(s)	1078
PleI	GAGTC	2 cut(s)	127, 926
PpsI	GAGTC	2 cut(s)	127, 926
Ppu21I	YACGTR	1 cut(s)	829
Psp6I	CCWGG	3 cut(s)	268, 775, 1038
PspGI	CCWGG	3 cut(s)	268, 775, 1038
PspN4I	GGNNCC	2 cut(s)	267, 813
PstI	CTGCAG	1 cut(s)	568
RsaI	GTAC	4 cut(s)	328, 599, 790, 840
RsaNI	GTAC	4 cut(s)	327, 598, 789, 839
RseI	CAYNNNNRTG	3 cut(s)	711, 827, 954
SaqAI	TTAA	3 cut(s)	246, 507, 1035
SatI	GCNGC	1 cut(s)	1077
Sau3AI	GATC	3 cut(s)	62, 601, 782
SchI	GAGTC	2 cut(s)	127, 927
ScrFI	CCNGG	5 cut(s)	67, 270, 777, 926, 1040
SduI	GDGCHC	1 cut(s)	547
SfaNI	GCATC	5 cut(s)	217, 561, 757, 790, 946
SfcI	CTRYAG	1 cut(s)	564
SmiMI	CAYNNNNRTG	3 cut(s)	711, 827, 954
SpeI	ACTAGT	1 cut(s)	470
Sse9I	AATT	5 cut(s)	199, 273, 347, 353, 372
SsiI	CCGC	1 cut(s)	891
SspMI	CTAG	4 cut(s)	471, 696, 725, 1091
StyD4I	CCNGG	5 cut(s)	65, 268, 775, 924, 1038
StyI	CCWWGG	1 cut(s)	793
TaaI	ACNGT	5 cut(s)	820, 932, 975, 1016, 1148
TaiI	ACGT	2 cut(s)	831, 1034
TaqI	TCGA	5 cut(s)	61, 152, 225, 393, 745
TasI	AATT	5 cut(s)	199, 273, 347, 353, 372
TfiI	GAWTC	4 cut(s)	209, 252, 390, 988
Tru1I	TTAA	3 cut(s)	246, 507, 1035
Tru9I	TTAA	3 cut(s)	246, 507, 1035
TscAI	CASTG	4 cut(s)	175, 193, 823, 1021
TseI	GCWGC	1 cut(s)	1076
TspDTI	ATGAA	2 cut(s)	365, 695
TspGWI	ACGGA	3 cut(s)	91, 344, 666
TspRI	CASTG	4 cut(s)	175, 193, 823, 1021
XapI	RAATTY	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	486
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	4 cut(s)	471, 696, 725, 1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.