Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

20051510 .. 20054405

Gene Structure 2896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCCGGGTTTCTATGCAGAGGGTGAGTATGACCTCGGTGGTTTTGCAGTTGTAATTGTGAACAAGGAATCAGTGATTGATGATAAGAATATTGTGGCTGGAGATGTCCTCATCGGCCTATCATCCGATGGAGTTCATTCCAATGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGATTTCACCAACAATATACCTAGAGTATTTCCAAAAGGCTTAGGAGCTGTCATCTATAATCATTCATGGGAAGTCCAAGCTGTTTTCAAATGGATCCAAGAGGTAATGAGAATTTCATACAATGTACCAAATACTTCATTGAGGTCTTTCGATTCTCCCCTTTCTCCCCTTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

125

Amino Acids

13.53

Weight (kDa)

5.47

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	54 - 103	1.1e-06	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	289, 302
AcsI	RAATTY	1 cut(s)	312
AfaI	GTAC	1 cut(s)	327
AgsI	TTSAA	1 cut(s)	289
AluBI	AGCT	2 cut(s)	248, 281
AluI	AGCT	2 cut(s)	248, 281
AlwI	GGATC	2 cut(s)	289, 302
AoxI	GGCC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	312
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	3 cut(s)	35, 199, 212
BamHI	GGATCC	1 cut(s)	294
BccI	CCATC	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	6
BfaI	CTAG	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	6
BplI	GAGNNNNNCTC	2 cut(s)	93, 125
BpmI	CTGGAG	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	5
BsnI	GGCC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	296
BspPI	GGATC	2 cut(s)	289, 302
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	122
BstKTI	GATC	1 cut(s)	297
BstMBI	GATC	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	4
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	6 cut(s)	98, 117, 185, 240, 248, 281
CviKI_1	RGCY	6 cut(s)	98, 117, 185, 240, 248, 281
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	1 cut(s)	241
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
FaeI	CATG	1 cut(s)	270
FaiI	YATR	7 cut(s)	15, 30, 155, 218, 258, 268, 319
FatI	CATG	1 cut(s)	266
FokI	GGATG	1 cut(s)	109
FspBI	CTAG	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	1 cut(s)	270
HinfI	GANTC	2 cut(s)	68, 353
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	3 cut(s)	35, 199, 212
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	17, 47
HpyF3I	CTNAG	1 cut(s)	241
Hsp92II	CATG	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	3 cut(s)	18, 84, 180
MaeI	CTAG	1 cut(s)	222
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MflI	RGATCY	1 cut(s)	294
MluCI	AATT	3 cut(s)	54, 156, 312
MnlI	CCTC	7 cut(s)	13, 44, 119, 161, 191, 295, 336
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	6
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	68, 353
PspN4I	GGNNCC	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	294
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
RseI	CAYNNNNRTG	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	8 cut(s)	36, 172, 202, 223, 250, 283, 306, 347
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	3 cut(s)	54, 156, 312
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	4
TaqI	TCGA	1 cut(s)	351
TasI	AATT	3 cut(s)	54, 156, 312
TfiI	GAWTC	2 cut(s)	68, 353
TscAI	CASTG	1 cut(s)	78
TspDTI	ATGAA	4 cut(s)	125, 255, 306, 327
TspRI	CASTG	1 cut(s)	78
XapI	RAATTY	1 cut(s)	312
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.