Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

35927689 .. 35929247

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG318600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGTGTCAATGATATTGTCACTTCTGGAGCCAAGCCATTATTTTTCCTTGATTACTTTGCTACAAGCCGCCTTGATGTTGATCTTGCTGAAAAGGTTATCAAGGGAATTGTCGATGGTTGCCAACAATCAGACTGTCCTCTTTTAGGTGGAGAGACTGCCGAGATGCCGGGTTTCTATGCAGAGGGTGAGTTTGACCTTTGTGGTACTGCGGTTGGAATTGTGCACAAGGAATCAGTGATTGATGGTAAAAACATTGTGGCTGGAGATGTCCTCATTGGCCTACCATCCAGTGGGGTTCATTCCAATGGTTTTTCTCTTGTAAGAAGGGTTCTAGCTCATAGTGGGTTGTCTCTGAAGGACCAACTACCGGGTAAATCTGTTACCTTAGGTGAAGCTTTGATGGCCCCCACAGTGATATATGTTAAGCAGGTGCTTGACATAGTTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGGTTTCACTGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCGTCTATAATGATTCATGGGAAGTCCCAGCTGTTTTCAAATGGATCCAAGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGACGAACTTTTAATATGGGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGGCATCCCACAGAATACTTGAAGATGGAAATGGAGCTTATTGCATTGGTGAGGTTGTAACTGGTGAAGGAGTGAGGTATAGACAAAATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

253

Amino Acids

26.9

Weight (kDa)

5.27

Isoelectric Point (pI)

28.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS	PF00586	1 - 75	1.7e-16	AIR synthase related protein, N-terminal domain
AIRS_C	PF02769	88 - 247	2.5e-35	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	421
Acc36I	ACCTGC	1 cut(s)	421
AccB7I	CCANNNNNTGG	1 cut(s)	293
AciI	CCGC	2 cut(s)	70, 212
AclWI	GGATC	2 cut(s)	577, 590
AcuI	CTGAAG	1 cut(s)	377
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	3 cut(s)	146, 293, 370
AgsI	TTSAA	2 cut(s)	577, 689
AluBI	AGCT	5 cut(s)	338, 398, 536, 569, 704
AluI	AGCT	5 cut(s)	338, 398, 536, 569, 704
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	3 cut(s)	149, 357, 613
Alw44I	GTGCAC	1 cut(s)	224
AlwI	GGATC	2 cut(s)	577, 590
AoxI	GGCC	3 cut(s)	280, 405, 526
ApaLI	GTGCAC	1 cut(s)	224
AspA2I	CCTAGG	1 cut(s)	529
AspS9I	GGNCC	2 cut(s)	361, 406
AsuC2I	CCSGG	2 cut(s)	171, 372
AsuHPI	GGTGA	4 cut(s)	200, 404, 728, 743
AvaII	GGWCC	1 cut(s)	361
AvrII	CCTAGG	1 cut(s)	529
AxyI	CCTNAGG	1 cut(s)	388
BaeGI	GKGCMC	1 cut(s)	228
BaeI	ACNNNNGTAYC	2 cut(s)	198, 231
BamHI	GGATCC	1 cut(s)	582
Bbv12I	GWGCWC	1 cut(s)	228
BccI	CCATC	6 cut(s)	110, 239, 295, 397, 640, 686
BcnI	CCSGG	2 cut(s)	171, 372
BcoDI	GTCTC	3 cut(s)	149, 357, 613
BfaI	CTAG	3 cut(s)	335, 510, 530
BfuAI	ACCTGC	1 cut(s)	421
BisI	GCNGC	1 cut(s)	70
BlnI	CCTAGG	1 cut(s)	529
BlsI	GCNGC	1 cut(s)	71
Bme1390I	CCNGG	2 cut(s)	171, 372
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	361, 406
BmiI	GGNNCC	3 cut(s)	31, 408, 584
BmrFI	CCNGG	2 cut(s)	171, 372
BmsI	GCATC	3 cut(s)	156, 598, 680
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
BpmI	CTGGAG	2 cut(s)	48, 285
BpuMI	CCSGG	2 cut(s)	171, 372
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 293, 370
Bse1I	ACTGG	2 cut(s)	291, 733
Bse21I	CCTNAGG	1 cut(s)	388
Bse8I	GATNNNNATC	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	3 cut(s)	287, 651, 671
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	3 cut(s)	146, 293, 370
BseNI	ACTGG	2 cut(s)	291, 733
BseSI	GKGCMC	1 cut(s)	228
BseYI	CCCAGC	1 cut(s)	565
BshFI	GGCC	3 cut(s)	282, 407, 528
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	170, 371
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	3 cut(s)	146, 293, 370
BsmAI	GTCTC	3 cut(s)	149, 357, 613
BsmBI	CGTCTC	1 cut(s)	613
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	3 cut(s)	282, 407, 528
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	82, 582
BspACI	CCGC	2 cut(s)	70, 212
BspANI	GGCC	3 cut(s)	282, 407, 528
BspLI	GGNNCC	3 cut(s)	31, 408, 584
BspMI	ACCTGC	1 cut(s)	421
BspPI	GGATC	2 cut(s)	577, 590
BsrI	ACTGG	2 cut(s)	291, 733
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	2 cut(s)	82, 582
BssT1I	CCWWGG	1 cut(s)	529
Bst4CI	ACNGT	2 cut(s)	137, 415
Bst6I	CTCTTC	1 cut(s)	592
BstDEI	CTNAG	1 cut(s)	388
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	287, 651, 671
BstKTI	GATC	2 cut(s)	85, 585
BstMAI	GTCTC	3 cut(s)	149, 357, 613
BstMBI	GATC	2 cut(s)	82, 582
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	169, 370
BstSLI	GKGCMC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	582
BstXI	CCANNNNNNTGG	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	582
Bsu36I	CCTNAGG	1 cut(s)	388
BsuRI	GGCC	3 cut(s)	282, 407, 528
BtsCI	GGATG	3 cut(s)	287, 651, 671
BtsIMutI	CAGTG	4 cut(s)	243, 298, 420, 495
BveI	ACCTGC	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	361, 406
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	1 cut(s)	555
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	1 cut(s)	388
DpnI	GATC	2 cut(s)	84, 584
DpnII	GATC	2 cut(s)	82, 582
Eam1104I	CTCTTC	1 cut(s)	592
EarI	CTCTTC	1 cut(s)	592
Eco130I	CCWWGG	1 cut(s)	529
Eco147I	AGGCCT	1 cut(s)	528
Eco47I	GGWCC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	377
Eco81I	CCTNAGG	1 cut(s)	388
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	529
Esp3I	CGTCTC	1 cut(s)	613
FaeI	CATG	1 cut(s)	558
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	1 cut(s)	554
Fnu4HI	GCNGC	1 cut(s)	70
FokI	GGATG	3 cut(s)	274, 658, 658
Fsp4HI	GCNGC	1 cut(s)	70
FspBI	CTAG	3 cut(s)	335, 510, 530
GluI	GCNGC	1 cut(s)	70
GsaI	CCCAGC	1 cut(s)	569
GsuI	CTGGAG	2 cut(s)	48, 285
HaeIII	GGCC	3 cut(s)	282, 407, 528
HapII	CCGG	2 cut(s)	170, 371
Hin1II	CATG	1 cut(s)	558
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	2 cut(s)	233, 551
HpaII	CCGG	2 cut(s)	170, 371
HphI	GGTGA	4 cut(s)	200, 404, 728, 743
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	133, 357
Hpy188III	TCNNGA	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	4 cut(s)	321, 352, 457, 728
HpyCH4III	ACNGT	2 cut(s)	137, 415
HpyCH4V	TGCA	3 cut(s)	182, 226, 711
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	1 cut(s)	388
Hsp92II	CATG	1 cut(s)	558
Kzo9I	GATC	2 cut(s)	82, 582
LmnI	GCTCC	3 cut(s)	29, 533, 701
LweI	GCATC	3 cut(s)	156, 598, 680
MaeI	CTAG	3 cut(s)	335, 510, 530
MaeIII	GTNAC	3 cut(s)	19, 382, 724
MalI	GATC	2 cut(s)	84, 584
MboI	GATC	2 cut(s)	82, 582
MboII	GAAGA	3 cut(s)	609, 617, 701
MflI	RGATCY	1 cut(s)	582
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	2 cut(s)	108, 219
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	9 cut(s)	150, 178, 284, 449, 479, 583, 661, 712, 735
MseI	TTAA	2 cut(s)	426, 630
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	2 cut(s)	170, 371
MspR9I	CCNGG	2 cut(s)	171, 372
MwoI	GCNNNNNNNGC	1 cut(s)	404
NciI	CCSGG	2 cut(s)	171, 372
NdeII	GATC	2 cut(s)	82, 582
NlaIII	CATG	1 cut(s)	558
NlaIV	GGNNCC	3 cut(s)	31, 408, 584
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	19
PaqCI	CACCTGC	1 cut(s)	421
PceI	AGGCCT	1 cut(s)	528
PfeI	GAWTC	2 cut(s)	233, 551
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	565
PspN4I	GGNNCC	3 cut(s)	31, 408, 584
PspPI	GGNCC	2 cut(s)	361, 406
PsrI	GAACNNNNNNTAC	2 cut(s)	315, 347
PsuI	RGATCY	1 cut(s)	582
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	426, 630
SatI	GCNGC	1 cut(s)	70
Sau3AI	GATC	2 cut(s)	82, 582
Sau96I	GGNCC	2 cut(s)	361, 406
ScrFI	CCNGG	2 cut(s)	171, 372
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	3 cut(s)	156, 598, 680
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	2 cut(s)	108, 219
SseBI	AGGCCT	1 cut(s)	528
SsiI	CCGC	2 cut(s)	70, 212
SspMI	CTAG	3 cut(s)	335, 510, 530
StuI	AGGCCT	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	169, 370
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	2 cut(s)	137, 415
TaqI	TCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	108, 219
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	233, 551
Tru1I	TTAA	2 cut(s)	426, 630
Tru9I	TTAA	2 cut(s)	426, 630
TscAI	CASTG	4 cut(s)	243, 298, 420, 502
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	290, 543
TspRI	CASTG	4 cut(s)	243, 298, 420, 502
Van91I	CCANNNNNTGG	1 cut(s)	293
VneI	GTGCAC	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	361
XagI	CCTNNNNNAGG	1 cut(s)	144
XmaJI	CCTAGG	1 cut(s)	529
XspI	CTAG	3 cut(s)	335, 510, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.