Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

27672757 .. 27673770

Gene Structure 1014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018259

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAATCGGCCGATGTTGCTACAAGCCGCCTTGATGTTGATCTTACTGAAAAGGTTGTCAAGAGAATTGTCGATGGTTGCCAACAATCTGACAGTACTCTTTTAGGTGGAGAGACTGCCGAGGTGCCGGGTTTCTATGTAGAGAGTGAGTATGAGCTCAGTGGTTTTGAGGTTGGAATTGTGAACAAGGAATCAGAGATTGATGGGAAAAACATTTTGGCTGGAGATGTCCTCATTGGCCTACCATCCAGTGGGATTTATTCCAGTAGTTTTTCTCTTGTAACTCTGCAAGAAGGACCAACTACCAACTCTATTACCTTGGGTGAAGCTTTGATGGCAGTGATATATGTTAAGCAGGTGCTTAACATAATTAGCAAGGGAGGTGTGAAAGGGGTAGCCCACATCAAAGGAGGTGGTTTCACCGACAAATGTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

146

Amino Acids

15.21

Weight (kDa)

4.48

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	74 - 142	4.5e-08	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	346
Acc36I	ACCTGC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	124
AccB7I	CCANNNNNTGG	1 cut(s)	251
AciI	CCGC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	9
AfaI	GTAC	2 cut(s)	97, 433
AfiI	CCNNNNNNNGG	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	2 cut(s)	157, 329
AluI	AGCT	2 cut(s)	157, 329
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	107
AoxI	GGCC	2 cut(s)	9, 238
AspS9I	GGNCC	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	335, 412
AvaII	GGWCC	1 cut(s)	296
BaeI	ACNNNNGTAYC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	4 cut(s)	68, 197, 253, 328
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	436
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	1 cut(s)	28
BlsI	GCNGC	1 cut(s)	29
BmcAI	AGTACT	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	129
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
BpmI	CTGGAG	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	120, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	249, 264
Bse8I	GATNNNNATC	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	120, 318
BseGI	GGATG	1 cut(s)	245
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	2 cut(s)	249, 264
BseX3I	CGGCCG	1 cut(s)	9
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	11, 240
BshNI	GGYRCC	1 cut(s)	124
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	11, 240
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	2 cut(s)	11, 240
BspCNI	CTCAG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	249, 264
BssECI	CCNNGG	2 cut(s)	120, 318
BssMI	GATC	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	245
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	40
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 335
BstSCI	CCNGG	1 cut(s)	127
BstZI	CGGCCG	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	11, 240
BtsCI	GGATG	1 cut(s)	245
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	3 cut(s)	166, 256, 345
BveI	ACCTGC	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	2 cut(s)	96, 432
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviJI	RGCY	7 cut(s)	11, 27, 157, 221, 240, 329, 398
CviKI_1	RGCY	7 cut(s)	11, 27, 157, 221, 240, 329, 398
CviQI	GTAC	2 cut(s)	96, 432
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	9
EagI	CGGCCG	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	296
Eco52I	CGGCCG	1 cut(s)	9
Eco53kI	GAGCTC	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	318
FaiI	YATR	5 cut(s)	138, 153, 346, 348, 368
Fnu4HI	GCNGC	1 cut(s)	28
FokI	GGATG	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	28
FspBI	CTAG	1 cut(s)	436
GluI	GCNGC	1 cut(s)	28
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	11, 240
HapII	CCGG	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	327
HinfI	GANTC	2 cut(s)	5, 191
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	2 cut(s)	335, 412
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	91, 196
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	287
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 335
HpyF3I	CTNAG	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	40
LpnPI	CCDG	5 cut(s)	141, 207, 262, 277, 341
MaeI	CTAG	1 cut(s)	436
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	66, 177, 369
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	5 cut(s)	115, 163, 242, 374, 404
MseI	TTAA	2 cut(s)	351, 363
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	17, 335
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	126
NmeAIII	GCCGAG	1 cut(s)	145
PaqCI	CACCTGC	1 cut(s)	346
PfeI	GAWTC	2 cut(s)	5, 191
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	296
RsaI	GTAC	2 cut(s)	97, 433
RsaNI	GTAC	2 cut(s)	96, 432
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	351, 363
SatI	GCNGC	1 cut(s)	28
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	296
ScaI	AGTACT	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	159
SinI	GGWCC	1 cut(s)	296
Sse9I	AATT	3 cut(s)	66, 177, 369
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	1 cut(s)	436
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	66, 177, 369
TatI	WGTACW	1 cut(s)	95
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	5, 191
Tru1I	TTAA	2 cut(s)	351, 363
Tru9I	TTAA	2 cut(s)	351, 363
TscAI	CASTG	3 cut(s)	166, 256, 345
TspRI	CASTG	3 cut(s)	166, 256, 345
Van91I	CCANNNNNTGG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	296
XspI	CTAG	1 cut(s)	436
ZrmI	AGTACT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.