Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Forward (+)

61526903 .. 61531594

Gene Structure 4692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00126310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTCCAAAGTTCGGGGGAGAGGTAACATGGGGATATTGATCCGAAGGCCGAGAGCACGAAGTTCGGGGTCTGAGGTAACCGGGGATGTTGATACGAAGGCCGAGAGCCCGAAGTTCGGGGTTCTGAGCCGCCTTGATGTTGATCTGGCTGAAAAGGTTATCAAGGGAATTGTAGATGGTTGCCAACAATCCGACCGTGCACTTTTAGAGGGTGAGTATGACCTCGGTGGTCTTGTGGTTGGAATTGTGAAGAAGGAATCGGTGATTGATGGGAAAAACATTTTGGTGGAGATGTCCTCATTGGCCTACCATCCAGTGGGGCTCATTCCAATGGTTCTAGCTCATAGTGGGTTGTCTCGAAAGACCAACTACCGGTTAGCTCTGTTACCTTGGCTGCTGAAAATGCTTTCTCGCTTTTTGCTTTTGCTTGCTGAAACAGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACGGGAGGTGGTCTCACCGACAATATACCTAGAGTATTTCCGGACGGTCTAGGAGCTGTCATCTATAAAGATTCATGGAAAGCCCCAGCTCTTTTCAAATGGATCCAGGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGAGGAACTTTTAATATGAGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGGCATCCCACAGAATACTTGAAGATGGAAATGGAGCTTACTGCATTGGTGAGGTTATAACTGGTGAAGGATGGCCGTCTTGTTCTTTCTGTCTTGTTCTTTGCCAAGAATCATCATCATCTGCAAAACCTGCAATCATCATCATCTTCCCCATCTCCACTTCTCTAGATTCCAGAATCCCAAATTCTCCCATCTCAAATCTAACAGATTTGGGAATTGGCAAGAGCGGAAGAGCCAAGAAGGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

307

Amino Acids

32.98

Weight (kDa)

8.73

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	147 - 246	1.6e-17	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	731
Acc36I	ACCTGC	1 cut(s)	811
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccBSI	CCGCTC	1 cut(s)	900
AccIII	TCCGGA	1 cut(s)	526
AciI	CCGC	2 cut(s)	130, 900
AclWI	GGATC	3 cut(s)	34, 583, 596
AcoI	YGGCCR	1 cut(s)	746
AcsI	RAATTY	1 cut(s)	856
AfiI	CCNNNNNNNGG	5 cut(s)	12, 116, 316, 372, 487
AgeI	ACCGGT	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	583, 695
AjnI	CCWGG	1 cut(s)	591
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	5 cut(s)	341, 380, 542, 575, 710
AluI	AGCT	5 cut(s)	341, 380, 542, 575, 710
Alw21I	GWGCWC	2 cut(s)	58, 202
Alw26I	GTCTC	2 cut(s)	360, 503
Alw44I	GTGCAC	1 cut(s)	198
AlwI	GGATC	3 cut(s)	34, 583, 596
Aor13HI	TCCGGA	1 cut(s)	526
AoxI	GGCC	4 cut(s)	47, 99, 303, 746
ApaLI	GTGCAC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	394
ApoI	RAATTY	1 cut(s)	856
AsiGI	ACCGGT	1 cut(s)	372
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	5 cut(s)	224, 274, 493, 734, 749
BaeGI	GKGCMC	1 cut(s)	202
BamHI	GGATCC	1 cut(s)	588
BanII	GRGCYC	2 cut(s)	110, 324
Bbv12I	GWGCWC	2 cut(s)	58, 202
BbvI	GCAGC	1 cut(s)	381
BccI	CCATC	8 cut(s)	170, 263, 318, 646, 692, 738, 833, 872
BceAI	ACGGC	1 cut(s)	733
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciT130I	CCWGG	1 cut(s)	593
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	360, 503
BfaI	CTAG	4 cut(s)	338, 516, 536, 839
BfuAI	ACCTGC	1 cut(s)	811
BisI	GCNGC	2 cut(s)	130, 395
BlsI	GCNGC	2 cut(s)	131, 396
Bme1390I	CCNGG	2 cut(s)	82, 593
BmiI	GGNNCC	1 cut(s)	590
BmrFI	CCNGG	2 cut(s)	82, 593
BmsI	GCATC	2 cut(s)	604, 686
BplI	GAGNNNNNCTC	4 cut(s)	281, 313, 483, 515
BpuMI	CCSGG	1 cut(s)	82
BsaBI	GATNNNNATC	2 cut(s)	38, 141
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	3 cut(s)	81, 223, 389
BsaWI	WCCGGW	2 cut(s)	372, 526
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 116, 316, 372, 487
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	2 cut(s)	314, 739
Bse8I	GATNNNNATC	2 cut(s)	38, 141
BseAI	TCCGGA	1 cut(s)	526
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	3 cut(s)	81, 223, 389
BseGI	GGATG	5 cut(s)	91, 310, 657, 677, 749
BseJI	GATNNNNATC	2 cut(s)	38, 141
BseLI	CCNNNNNNNGG	5 cut(s)	12, 116, 316, 372, 487
BseMII	CTCAG	2 cut(s)	63, 116
BseNI	ACTGG	2 cut(s)	314, 739
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	381
BseYI	CCCAGC	1 cut(s)	571
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	4 cut(s)	49, 101, 305, 748
BshTI	ACCGGT	1 cut(s)	372
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	2 cut(s)	58, 202
BsiSI	CCGG	3 cut(s)	81, 373, 527
BslI	CCNNNNNNNGG	5 cut(s)	12, 116, 316, 372, 487
BsmAI	GTCTC	2 cut(s)	360, 503
BsnI	GGCC	4 cut(s)	49, 101, 305, 748
Bso31I	GGTCTC	1 cut(s)	503
Bsp1286I	GDGCHC	4 cut(s)	58, 110, 202, 324
Bsp13I	TCCGGA	1 cut(s)	526
Bsp143I	GATC	3 cut(s)	39, 142, 588
BspACI	CCGC	2 cut(s)	130, 900
BspANI	GGCC	4 cut(s)	49, 101, 305, 748
BspCNI	CTCAG	2 cut(s)	64, 117
BspEI	TCCGGA	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	590
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	3 cut(s)	34, 583, 596
BspQI	GCTCTTC	1 cut(s)	898
BspTNI	GGTCTC	1 cut(s)	503
BsrBI	CCGCTC	1 cut(s)	900
BsrFI	RCCGGY	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	314, 739
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	3 cut(s)	81, 223, 389
BssMI	GATC	3 cut(s)	39, 142, 588
BssT1I	CCWWGG	1 cut(s)	389
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	3 cut(s)	197, 439, 533
Bst6I	CTCTTC	2 cut(s)	598, 898
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	2 cut(s)	72, 125
BstEII	GGTNACC	1 cut(s)	76
BstF5I	GGATG	5 cut(s)	91, 310, 657, 677, 749
BstKTI	GATC	3 cut(s)	42, 145, 591
BstMAI	GTCTC	2 cut(s)	360, 503
BstMBI	GATC	3 cut(s)	39, 142, 588
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	403, 803
BstNI	CCWGG	1 cut(s)	593
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	2 cut(s)	80, 591
BstSLI	GKGCMC	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	588
BstXI	CCANNNNNNTGG	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	588
BsuRI	GGCC	4 cut(s)	49, 101, 305, 748
BtsCI	GGATG	5 cut(s)	91, 310, 657, 677, 749
BtsIMutI	CAGTG	2 cut(s)	321, 444
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	1 cut(s)	429
Cfr10I	RCCGGY	1 cut(s)	372
CspAI	ACCGGT	1 cut(s)	372
CviAII	CATG	2 cut(s)	28, 561
DdeI	CTNAG	2 cut(s)	72, 125
DpnI	GATC	3 cut(s)	41, 144, 590
DpnII	GATC	3 cut(s)	39, 142, 588
EaeI	YGGCCR	1 cut(s)	746
Eam1104I	CTCTTC	2 cut(s)	598, 898
EarI	CTCTTC	2 cut(s)	598, 898
Eco130I	CCWWGG	1 cut(s)	389
Eco24I	GRGCYC	2 cut(s)	110, 324
Eco31I	GGTCTC	1 cut(s)	503
Eco91I	GGTNACC	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	591
EcoT14I	CCWWGG	1 cut(s)	389
EcoT38I	GRGCYC	2 cut(s)	110, 324
ErhI	CCWWGG	1 cut(s)	389
FaeI	CATG	2 cut(s)	31, 564
FaiI	YATR	9 cut(s)	29, 219, 345, 449, 512, 552, 562, 641, 731
FatI	CATG	2 cut(s)	27, 560
Fnu4HI	GCNGC	2 cut(s)	130, 395
FokI	GGATG	5 cut(s)	98, 297, 664, 664, 756
FriOI	GRGCYC	2 cut(s)	110, 324
Fsp4HI	GCNGC	2 cut(s)	130, 395
FspBI	CTAG	4 cut(s)	338, 516, 536, 839
GluI	GCNGC	2 cut(s)	130, 395
GsaI	CCCAGC	1 cut(s)	575
HaeIII	GGCC	4 cut(s)	49, 101, 305, 748
HapII	CCGG	3 cut(s)	81, 373, 527
Hin1II	CATG	2 cut(s)	31, 564
HinfI	GANTC	5 cut(s)	257, 557, 782, 842, 849
HpaII	CCGG	3 cut(s)	81, 373, 527
HphI	GGTGA	5 cut(s)	224, 274, 493, 734, 749
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	4 cut(s)	44, 73, 126, 193
Hpy188III	TCNNGA	4 cut(s)	357, 527, 839, 846
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	6 cut(s)	39, 91, 247, 463, 734, 907
HpyCH4III	ACNGT	3 cut(s)	197, 439, 533
HpyCH4V	TGCA	4 cut(s)	200, 717, 797, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	403, 803
HpyF3I	CTNAG	2 cut(s)	72, 125
Hsp92II	CATG	2 cut(s)	31, 564
Kpn2I	TCCGGA	1 cut(s)	526
Kzo9I	GATC	3 cut(s)	39, 142, 588
LguI	GCTCTTC	1 cut(s)	898
LmnI	GCTCC	2 cut(s)	539, 707
Lsp1109I	GCAGC	1 cut(s)	381
LweI	GCATC	2 cut(s)	604, 686
MaeI	CTAG	4 cut(s)	338, 516, 536, 839
MaeIII	GTNAC	3 cut(s)	23, 76, 384
MalI	GATC	3 cut(s)	41, 144, 590
MbiI	CCGCTC	1 cut(s)	900
MboI	GATC	3 cut(s)	39, 142, 588
MboII	GAAGA	6 cut(s)	262, 615, 623, 707, 811, 915
MflI	RGATCY	1 cut(s)	588
MhlI	GDGCHC	4 cut(s)	58, 110, 202, 324
MluCI	AATT	5 cut(s)	168, 243, 450, 856, 888
MmeI	TCCRAC	2 cut(s)	216, 220
MroI	TCCGGA	1 cut(s)	526
MseI	TTAA	1 cut(s)	636
MslI	CAYNNNNRTG	2 cut(s)	284, 329
MspI	CCGG	3 cut(s)	81, 373, 527
MspR9I	CCNGG	2 cut(s)	82, 593
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	2 cut(s)	403, 803
NciI	CCSGG	1 cut(s)	82
NdeII	GATC	3 cut(s)	39, 142, 588
NlaIII	CATG	2 cut(s)	31, 564
NlaIV	GGNNCC	1 cut(s)	590
NmeAIII	GCCGAG	2 cut(s)	75, 127
PciSI	GCTCTTC	1 cut(s)	898
PfeI	GAWTC	5 cut(s)	257, 557, 782, 842, 849
PflMI	CCANNNNNTGG	1 cut(s)	316
PfoI	TCCNGGA	1 cut(s)	591
PinAI	ACCGGT	1 cut(s)	372
PkrI	GCNGC	2 cut(s)	131, 396
PsiI	TTATAA	1 cut(s)	731
Psp6I	CCWGG	1 cut(s)	591
PspEI	GGTNACC	1 cut(s)	76
PspFI	CCCAGC	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	588
RseI	CAYNNNNRTG	2 cut(s)	284, 329
SapI	GCTCTTC	1 cut(s)	898
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	2 cut(s)	130, 395
Sau3AI	GATC	3 cut(s)	39, 142, 588
ScrFI	CCNGG	2 cut(s)	82, 593
SduI	GDGCHC	4 cut(s)	58, 110, 202, 324
SfaNI	GCATC	2 cut(s)	604, 686
SmiMI	CAYNNNNRTG	2 cut(s)	284, 329
Sse9I	AATT	5 cut(s)	168, 243, 450, 856, 888
SsiI	CCGC	2 cut(s)	130, 900
SspMI	CTAG	4 cut(s)	338, 516, 536, 839
StyD4I	CCNGG	2 cut(s)	80, 591
StyI	CCWWGG	1 cut(s)	389
TaaI	ACNGT	3 cut(s)	197, 439, 533
TaqI	TCGA	1 cut(s)	358
TasI	AATT	5 cut(s)	168, 243, 450, 856, 888
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	5 cut(s)	257, 557, 782, 842, 849
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	2 cut(s)	321, 444
TseI	GCWGC	1 cut(s)	394
TspDTI	ATGAA	1 cut(s)	549
TspRI	CASTG	2 cut(s)	321, 444
Van91I	CCANNNNNTGG	1 cut(s)	316
VneI	GTGCAC	1 cut(s)	198
XapI	RAATTY	1 cut(s)	856
XbaI	TCTAGA	1 cut(s)	838
XspI	CTAG	4 cut(s)	338, 516, 536, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.