Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

36475585 .. 36477565

Gene Structure 1981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19555

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTCCACCGCCCTCAAAGCAAACGCAGAGCTTGCTCTTGGCTTTGCCTCTTCTTCCAGACCCTCTTGTTCGAAACCCAACTCCATCCATACCCAGCTATCCACATTGCCATCGGGGTCTCTCCCCAACAACTTCTCCGGCCTCTCTATGGCTTCATCAAGTGGAATTTCTCAGAGCAAGCGCGTATGCTCACTTTCGAAGAATGACTCCGGTGAAAGCTCTGGTCAAAATGGTGGTTTTACGTATAAGGATGCTGGTGTTGATATAGACGCCGGGTCGAACTTGTTCGACGAATTGCCAAGATGGCTCTTGGGATTGGAGGCTTTGGAGGCTTTTTCCCTCTCGGTGATCATTTTCTTGTTGCTGGTACTGATGCATTGTGTGGGAACTAAACTTAAGCTTGCATTTGATACCGGAATTTATGAGACCATTGGTATTGATTTGGTTGCTATGAGTGTCAATGATATTGTCACTTCTGGAGCCAAGCCATTATTTTTCCTTGATTGCTTTGCTACAAGCCGCCTTGATGTTGATCTTGCTGAAAAGGTTATCAAGGGAATTGTCGATGGTTGCCAACAATCAGACTGTCCTCTTTTAGGTGGAGAGACTGCCGAGATGCCGGGTTTCTATGCAGAGGGTGAGTTTGACCTTTGTGGTACTGCGGTTGGAATTGGGCACAAGGAATCAGTGATTGATGGTAAAAACATTGTGGCTGGAGATGTCCTCATTGGCCTACCATCCAGTGGGGTTCATTCCAATGGTTTTTCTCTTGTAAGAAGGTTCCTGCTGAAAATGCTTTGTGCGTTTTGCTTTTGCTTGCTGAAACAGGTGCTTGACATAGTTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGGGTTCACTGACAATATACCTAGAGTTTTTCCAAAAGGCCTAGGAGCTGTCATCTATAATGATTCATGGGAAGTCCCAGCTGTTTTCAAATGGATCCAAGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGACGAACTTTTAATATGGGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGGCATCCCACAGAATACTTGAAGATGGAAATGGAGCTTATTGCATTGGTGAGGTTGTAACTGGTGAAGGAGTGAGTTATAGACAAAATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

385

Amino Acids

40.76

Weight (kDa)

5.16

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS	PF00586	126 - 224	1.3e-20	AIR synthase related protein, N-terminal domain
AIRS_C	PF02769	238 - 379	8.9e-25	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	743
AccII	CGCG	1 cut(s)	183
AciI	CCGC	3 cut(s)	9, 520, 662
AclWI	GGATC	2 cut(s)	973, 986
AcsI	RAATTY	2 cut(s)	165, 417
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	2 cut(s)	369, 658
AfiI	CCNNNNNNNGG	3 cut(s)	148, 596, 743
AflII	CTTAAG	1 cut(s)	395
AgsI	TTSAA	2 cut(s)	973, 1085
AhdI	GACNNNNNGTC	1 cut(s)	274
AluBI	AGCT	7 cut(s)	31, 97, 219, 400, 932, 965, 1100
AluI	AGCT	7 cut(s)	31, 97, 219, 400, 932, 965, 1100
Alw26I	GTCTC	4 cut(s)	123, 419, 599, 1009
AlwI	GGATC	2 cut(s)	973, 986
AoxI	GGCC	3 cut(s)	139, 730, 922
ApoI	RAATTY	2 cut(s)	165, 417
Asp700I	GAANNNNTTC	1 cut(s)	284
AspA2I	CCTAGG	1 cut(s)	925
AspLEI	GCGC	1 cut(s)	183
AsuC2I	CCSGG	2 cut(s)	274, 621
AsuHPI	GGTGA	5 cut(s)	224, 358, 650, 1124, 1139
AsuII	TTCGAA	2 cut(s)	71, 197
AvrII	CCTAGG	1 cut(s)	925
BaeGI	GKGCMC	1 cut(s)	678
BaeI	ACNNNNGTAYC	2 cut(s)	648, 681
BamHI	GGATCC	1 cut(s)	978
BccI	CCATC	8 cut(s)	92, 118, 297, 560, 689, 745, 1036, 1082
BclI	TGATCA	1 cut(s)	348
BcnI	CCSGG	2 cut(s)	274, 621
BcoDI	GTCTC	4 cut(s)	123, 419, 599, 1009
BfaI	CTAG	2 cut(s)	906, 926
BfrI	CTTAAG	1 cut(s)	395
BglI	GCCNNNNNGGC	1 cut(s)	304
BisI	GCNGC	1 cut(s)	520
BlnI	CCTAGG	1 cut(s)	925
BlsI	GCNGC	1 cut(s)	521
Bme1390I	CCNGG	2 cut(s)	274, 621
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmiI	GGNNCC	3 cut(s)	481, 782, 980
BmrFI	CCNGG	2 cut(s)	274, 621
BmsI	GCATC	5 cut(s)	241, 363, 606, 994, 1076
BplI	GAGNNNNNCTC	2 cut(s)	708, 740
BpmI	CTGGAG	2 cut(s)	498, 735
Bpu14I	TTCGAA	2 cut(s)	71, 197
BpuMI	CCSGG	2 cut(s)	274, 621
BsaAI	YACGTR	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	2 cut(s)	123, 419
BsaJI	CCNNGG	1 cut(s)	925
BsaWI	WCCGGW	2 cut(s)	209, 413
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 596, 743
Bse1I	ACTGG	2 cut(s)	741, 1129
Bse3DI	GCAATG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	925
BseGI	GGATG	5 cut(s)	84, 256, 737, 1047, 1067
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	3 cut(s)	148, 596, 743
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	741, 1129
BseSI	GKGCMC	1 cut(s)	678
BseYI	CCCAGC	2 cut(s)	93, 961
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	141, 732, 924
BsiSI	CCGG	5 cut(s)	138, 210, 273, 414, 620
BslFI	GGGAC	1 cut(s)	944
BslI	CCNNNNNNNGG	3 cut(s)	148, 596, 743
BsmAI	GTCTC	4 cut(s)	123, 419, 599, 1009
BsmBI	CGTCTC	1 cut(s)	1009
BsmFI	GGGAC	1 cut(s)	944
BsnI	GGCC	3 cut(s)	141, 732, 924
Bso31I	GGTCTC	2 cut(s)	123, 419
Bsp119I	TTCGAA	2 cut(s)	71, 197
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp143I	GATC	3 cut(s)	348, 532, 978
BspACI	CCGC	3 cut(s)	9, 520, 662
BspANI	GGCC	3 cut(s)	141, 732, 924
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	3 cut(s)	481, 782, 980
BspPI	GGATC	2 cut(s)	973, 986
BspT104I	TTCGAA	2 cut(s)	71, 197
BspTI	CTTAAG	1 cut(s)	395
BspTNI	GGTCTC	2 cut(s)	123, 419
BsrDI	GCAATG	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	741, 1129
BssECI	CCNNGG	1 cut(s)	925
BssMI	GATC	3 cut(s)	348, 532, 978
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	925
Bst4CI	ACNGT	1 cut(s)	587
Bst6I	CTCTTC	2 cut(s)	55, 988
BstACI	GRCGYC	1 cut(s)	270
BstAFI	CTTAAG	1 cut(s)	395
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	243
BstBI	TTCGAA	2 cut(s)	71, 197
BstC8I	GCNNGC	4 cut(s)	33, 179, 402, 818
BstDEI	CTNAG	1 cut(s)	171
BstENI	CCTNNNNNAGG	1 cut(s)	594
BstF5I	GGATG	5 cut(s)	84, 256, 737, 1047, 1067
BstFNI	CGCG	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	3 cut(s)	351, 535, 981
BstMAI	GTCTC	4 cut(s)	123, 419, 599, 1009
BstMBI	GATC	3 cut(s)	348, 532, 978
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 32, 304, 329, 793
BstSCI	CCNGG	2 cut(s)	272, 619
BstSLI	GKGCMC	1 cut(s)	678
BstSNI	TACGTA	1 cut(s)	243
BstUI	CGCG	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	978
BstXI	CCANNNNNNTGG	1 cut(s)	989
BstYI	RGATCY	1 cut(s)	978
BsuRI	GGCC	3 cut(s)	141, 732, 924
BtsCI	GGATG	5 cut(s)	84, 256, 737, 1047, 1067
BtsIMutI	CAGTG	3 cut(s)	693, 748, 891
Cac8I	GCNNGC	4 cut(s)	33, 179, 402, 818
CfoI	GCGC	1 cut(s)	183
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	368, 657
CviAII	CATG	1 cut(s)	951
CviQI	GTAC	2 cut(s)	368, 657
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	3 cut(s)	350, 534, 980
DpnII	GATC	3 cut(s)	348, 532, 978
DriI	GACNNNNNGTC	1 cut(s)	274
Eam1104I	CTCTTC	2 cut(s)	55, 988
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EarI	CTCTTC	2 cut(s)	55, 988
Eco105I	TACGTA	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	925
Eco147I	AGGCCT	1 cut(s)	924
Eco31I	GGTCTC	2 cut(s)	123, 419
EcoNI	CCTNNNNNAGG	1 cut(s)	594
EcoT14I	CCWWGG	1 cut(s)	925
EcoT22I	ATGCAT	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	925
Esp3I	CGTCTC	1 cut(s)	1009
FaeI	CATG	1 cut(s)	954
FaqI	GGGAC	1 cut(s)	944
FatI	CATG	1 cut(s)	950
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	520
FokI	GGATG	5 cut(s)	71, 263, 724, 1054, 1054
Fsp4HI	GCNGC	1 cut(s)	520
FspBI	CTAG	2 cut(s)	906, 926
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	520
GsaI	CCCAGC	2 cut(s)	97, 965
GsuI	CTGGAG	2 cut(s)	498, 735
HaeIII	GGCC	3 cut(s)	141, 732, 924
HapII	CCGG	5 cut(s)	138, 210, 273, 414, 620
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	954
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	3 cut(s)	206, 683, 947
HpaII	CCGG	5 cut(s)	138, 210, 273, 414, 620
HphI	GGTGA	5 cut(s)	224, 358, 650, 1124, 1139
Hpy166II	GTNNAC	2 cut(s)	6, 891
Hpy188I	TCNGA	2 cut(s)	174, 583
Hpy188III	TCNNGA	2 cut(s)	57, 477
Hpy8I	GTNNAC	2 cut(s)	6, 891
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	3 cut(s)	771, 853, 1124
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	4 cut(s)	376, 404, 632, 1107
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 32, 304, 329, 793
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	242
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	954
HspAI	GCGC	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	3 cut(s)	348, 532, 978
LmnI	GCTCC	3 cut(s)	479, 929, 1097
LweI	GCATC	5 cut(s)	241, 363, 606, 994, 1076
MaeI	CTAG	2 cut(s)	906, 926
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	469, 1120
MalI	GATC	3 cut(s)	350, 534, 980
MboI	GATC	3 cut(s)	348, 532, 978
MboII	GAAGA	6 cut(s)	42, 45, 211, 1005, 1013, 1097
MflI	RGATCY	1 cut(s)	978
MhlI	GDGCHC	1 cut(s)	678
MluCI	AATT	5 cut(s)	165, 293, 417, 558, 669
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	646
Mph1103I	ATGCAT	1 cut(s)	378
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	2 cut(s)	396, 1026
MslI	CAYNNNNRTG	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	965
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	5 cut(s)	138, 210, 273, 414, 620
MspR9I	CCNGG	2 cut(s)	274, 621
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	5 cut(s)	17, 32, 304, 329, 793
NciI	CCSGG	2 cut(s)	274, 621
NdeII	GATC	3 cut(s)	348, 532, 978
NlaIII	CATG	1 cut(s)	954
NlaIV	GGNNCC	3 cut(s)	481, 782, 980
NmeAIII	GCCGAG	1 cut(s)	637
NmuCI	GTSAC	1 cut(s)	469
NsiI	ATGCAT	1 cut(s)	378
NspV	TTCGAA	2 cut(s)	71, 197
PceI	AGGCCT	1 cut(s)	924
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	683, 947
PflMI	CCANNNNNTGG	1 cut(s)	743
PkrI	GCNGC	1 cut(s)	521
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Ppu21I	YACGTR	1 cut(s)	243
PspFI	CCCAGC	2 cut(s)	93, 961
PspN4I	GGNNCC	3 cut(s)	481, 782, 980
PsuI	RGATCY	1 cut(s)	978
PvuII	CAGCTG	1 cut(s)	965
RsaI	GTAC	2 cut(s)	369, 658
RsaNI	GTAC	2 cut(s)	368, 657
RseI	CAYNNNNRTG	1 cut(s)	756
SaqAI	TTAA	2 cut(s)	396, 1026
SatI	GCNGC	1 cut(s)	520
Sau3AI	GATC	3 cut(s)	348, 532, 978
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	274, 621
SduI	GDGCHC	1 cut(s)	678
SfaNI	GCATC	5 cut(s)	241, 363, 606, 994, 1076
SfuI	TTCGAA	2 cut(s)	71, 197
SmiMI	CAYNNNNRTG	1 cut(s)	756
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SnaBI	TACGTA	1 cut(s)	243
Sse9I	AATT	5 cut(s)	165, 293, 417, 558, 669
SseBI	AGGCCT	1 cut(s)	924
SsiI	CCGC	3 cut(s)	9, 520, 662
SspMI	CTAG	2 cut(s)	906, 926
StuI	AGGCCT	1 cut(s)	924
StyD4I	CCNGG	2 cut(s)	272, 619
StyI	CCWWGG	1 cut(s)	925
TaaI	ACNGT	1 cut(s)	587
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	5 cut(s)	71, 197, 278, 288, 564
TasI	AATT	5 cut(s)	165, 293, 417, 558, 669
TauI	GCSGC	1 cut(s)	522
TfiI	GAWTC	2 cut(s)	683, 947
Tru1I	TTAA	2 cut(s)	396, 1026
Tru9I	TTAA	2 cut(s)	396, 1026
TscAI	CASTG	3 cut(s)	693, 748, 898
TseFI	GTSAC	1 cut(s)	469
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	3 cut(s)	144, 740, 939
TspRI	CASTG	3 cut(s)	693, 748, 898
Van91I	CCANNNNNTGG	1 cut(s)	743
Vha464I	CTTAAG	1 cut(s)	395
XagI	CCTNNNNNAGG	1 cut(s)	594
XapI	RAATTY	2 cut(s)	165, 417
XmaJI	CCTAGG	1 cut(s)	925
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	2 cut(s)	906, 926
Zsp2I	ATGCAT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.