Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

31047760 .. 31077719

Gene Structure 29960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG276600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAGAGCATTGAAGAACCCAAGAAGCCCGGTCGCCGTGGCCGGAAAAAGACCCCACCAAAGAAAACCCAGCGCTCCAAAAAAGCCCAGATTGAAAAATGGCCCGATAGAACTAGAACCCGAATCTTCAGATTCGGAGCTCAAAGATTACGACGACGGCATTGATTTCTTGTACGACTACCCGCCCTTGGTTTGCTGCTTTAGGGCAGCCCAGAAAAAGTTTGTCCCGACGGTTCGGGTCTCTGACAACCCGATGGACCTGGACATGTATCCTACAGAATATGGAATGTTTCACTTCTATATAGCTGACAGAGAACATGACTGGAGGGAGGGAACAGAGAAGTACAAGTTCTTTGATAATTGCCTTGGATTCTTGGATAGACAAAAGGTACATCTTTATAGGGTTCTAGCTCATAGTGGGTTGTCTCTGACAGACCAACTACTGGGTAGCTCTGTTACCTTGGGTGAAGCTTTGATGGCCCCCATAATGATATATGTTAAGCAGGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCATAGGAGGTGGTCTCACCGACAATATACTTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATAAAGATTCATGGGAAGTGTCAGCTGTTTTCAAATGGATCCAGGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGAAGAACTTTTAATATGGGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGACATCCCACAGAATACTTGAAGATGGAAATGGAGCTTACTGCATTGGTGAGGTTATAACTGGTGAAGGAGAGCCTTCTTCACCCAAAATCTCTCTCCTTCACCTAACGTACTGCACAACTCCAACCTTTCACTTGCCAGAGTTTTTCGATCCAAATCCAACTCCACTCCTCTATCTTTCCTCAATTCCATACCTTGATTCAAAAACATTTATAAATTTCCCCCAACCTTTAGATCAATTCGAAAATACCAACTGCATAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

334

Amino Acids

37.56

Weight (kDa)

6.01

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	144 - 269	1.7e-19	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	797, 953
AarI	CACCTGC	1 cut(s)	493
Acc36I	ACCTGC	1 cut(s)	493
AccB7I	CCANNNNNTGG	1 cut(s)	442
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	3 cut(s)	649, 662, 884
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	955
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	4 cut(s)	173, 344, 390, 851
AfeI	AGCGCT	1 cut(s)	73
AfiI	CCNNNNNNNGG	2 cut(s)	187, 442
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	5 cut(s)	13, 94, 649, 761, 942
AjnI	CCWGG	2 cut(s)	258, 657
AluBI	AGCT	8 cut(s)	139, 305, 410, 450, 470, 608, 641, 776
AluI	AGCT	8 cut(s)	139, 305, 410, 450, 470, 608, 641, 776
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	4 cut(s)	244, 429, 569, 734
AlwI	GGATC	3 cut(s)	649, 662, 884
Aor51HI	AGCGCT	1 cut(s)	73
AoxI	GGCC	4 cut(s)	39, 100, 477, 598
ApeKI	GCWGC	2 cut(s)	195, 206
ApoI	RAATTY	1 cut(s)	955
AspA2I	CCTAGG	1 cut(s)	601
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	3 cut(s)	101, 256, 478
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	6 cut(s)	476, 559, 800, 813, 815, 833
AsuII	TTCGAA	1 cut(s)	981
AvaII	GGWCC	1 cut(s)	256
AvrII	CCTAGG	1 cut(s)	601
BamHI	GGATCC	1 cut(s)	654
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	182, 218
BccI	CCATC	4 cut(s)	247, 469, 712, 758
BceAI	ACGGC	2 cut(s)	20, 172
BciT130I	CCWGG	2 cut(s)	260, 659
BciVI	GTATCC	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	4 cut(s)	244, 429, 569, 734
BfaI	CTAG	3 cut(s)	113, 407, 602
BfmI	CTRYAG	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	493
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	2 cut(s)	196, 207
BlnI	CCTAGG	1 cut(s)	601
BlsI	GCNGC	2 cut(s)	197, 208
Bme1390I	CCNGG	3 cut(s)	29, 260, 659
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	3 cut(s)	101, 256, 478
BmiI	GGNNCC	2 cut(s)	480, 656
BmrFI	CCNGG	3 cut(s)	29, 260, 659
BmrI	ACTGGG	1 cut(s)	452
BmsI	GCATC	1 cut(s)	670
BmuI	ACTGGG	1 cut(s)	452
BplI	GAGNNNNNCTC	2 cut(s)	549, 581
BpmI	CTGGAG	1 cut(s)	343
Bpu14I	TTCGAA	1 cut(s)	981
BpuMI	CCSGG	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	894
BsaI	GGTCTC	2 cut(s)	244, 569
BsaJI	CCNNGG	5 cut(s)	36, 186, 364, 459, 601
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 442
Bse1I	ACTGG	3 cut(s)	326, 447, 805
Bse8I	GATNNNNATC	1 cut(s)	894
BseBI	CCWGG	2 cut(s)	260, 659
BseDI	CCNNGG	5 cut(s)	36, 186, 364, 459, 601
BseGI	GGATG	2 cut(s)	723, 743
BseJI	GATNNNNATC	1 cut(s)	894
BseLI	CCNNNNNNNGG	2 cut(s)	187, 442
BseNI	ACTGG	3 cut(s)	326, 447, 805
BseRI	GAGGAG	1 cut(s)	899
BseXI	GCAGC	2 cut(s)	182, 218
BseYI	CCCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	838
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	4 cut(s)	41, 102, 479, 600
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	29, 42
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	187, 442
BsmAI	GTCTC	4 cut(s)	244, 429, 569, 734
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	4 cut(s)	41, 102, 479, 600
Bso31I	GGTCTC	2 cut(s)	244, 569
Bsp119I	TTCGAA	1 cut(s)	981
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	654, 889, 973
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	4 cut(s)	41, 102, 479, 600
BspLI	GGNNCC	2 cut(s)	480, 656
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	3 cut(s)	649, 662, 884
BspT104I	TTCGAA	1 cut(s)	981
BspTNI	GGTCTC	2 cut(s)	244, 569
BsrI	ACTGG	3 cut(s)	326, 447, 805
BssECI	CCNNGG	5 cut(s)	36, 186, 364, 459, 601
BssMI	GATC	3 cut(s)	654, 889, 973
BssT1I	CCWWGG	4 cut(s)	186, 364, 459, 601
Bst2UI	CCWGG	2 cut(s)	260, 659
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	664
BstBI	TTCGAA	1 cut(s)	981
BstDEI	CTNAG	1 cut(s)	581
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	723, 743
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	3 cut(s)	657, 892, 976
BstMAI	GTCTC	4 cut(s)	244, 429, 569, 734
BstMBI	GATC	3 cut(s)	654, 889, 973
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstNI	CCWGG	2 cut(s)	260, 659
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	3 cut(s)	27, 258, 657
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	182, 218
BstX2I	RGATCY	1 cut(s)	654
BstXI	CCANNNNNNTGG	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	654
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	4 cut(s)	41, 102, 479, 600
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	723, 743
BveI	ACCTGC	1 cut(s)	493
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	3 cut(s)	101, 256, 478
Csp6I	GTAC	4 cut(s)	172, 343, 389, 850
CviAII	CATG	3 cut(s)	265, 317, 627
CviQI	GTAC	4 cut(s)	172, 343, 389, 850
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	3 cut(s)	656, 891, 975
DpnII	GATC	3 cut(s)	654, 889, 973
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	664
EarI	CTCTTC	1 cut(s)	664
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	4 cut(s)	186, 364, 459, 601
Eco147I	AGGCCT	1 cut(s)	600
Eco24I	GRGCYC	1 cut(s)	141
Eco31I	GGTCTC	2 cut(s)	244, 569
Eco47I	GGWCC	1 cut(s)	256
Eco47III	AGCGCT	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	258, 657
EcoT14I	CCWWGG	4 cut(s)	186, 364, 459, 601
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	4 cut(s)	186, 364, 459, 601
FaeI	CATG	3 cut(s)	268, 320, 630
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	3 cut(s)	264, 316, 626
FauI	CCCGC	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	196, 207
FokI	GGATG	2 cut(s)	730, 730
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	196, 207
FspBI	CTAG	3 cut(s)	113, 407, 602
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	196, 207
GsaI	CCCAGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	343
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	4 cut(s)	41, 102, 479, 600
HapII	CCGG	2 cut(s)	29, 42
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	268, 320, 630
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	5 cut(s)	122, 131, 369, 623, 938
HpaII	CCGG	2 cut(s)	29, 42
HphI	GGTGA	6 cut(s)	476, 559, 800, 813, 815, 833
Hpy188I	TCNGA	4 cut(s)	130, 136, 244, 429
Hpy188III	TCNNGA	1 cut(s)	226
Hpy99I	CGWCG	3 cut(s)	155, 158, 232
HpyAV	CCTTC	4 cut(s)	529, 800, 825, 848
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	848
HpyCH4V	TGCA	3 cut(s)	783, 855, 996
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	1 cut(s)	581
HpySE526I	ACGT	1 cut(s)	848
Hsp92II	CATG	3 cut(s)	268, 320, 630
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	654, 889, 973
LmnI	GCTCC	4 cut(s)	79, 136, 605, 773
Lsp1109I	GCAGC	2 cut(s)	182, 218
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	3 cut(s)	113, 407, 602
MaeII	ACGT	1 cut(s)	848
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	3 cut(s)	656, 891, 975
MboI	GATC	3 cut(s)	654, 889, 973
MboII	GAAGA	7 cut(s)	25, 117, 681, 689, 705, 773, 810
MflI	RGATCY	1 cut(s)	654
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	5 cut(s)	358, 516, 924, 955, 977
MmeI	TCCRAC	2 cut(s)	887, 923
MnlI	CCTC	8 cut(s)	318, 322, 521, 551, 655, 784, 920, 931
MseI	TTAA	2 cut(s)	498, 702
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	2 cut(s)	29, 42
MspR9I	CCNGG	3 cut(s)	29, 260, 659
MvaI	CCWGG	2 cut(s)	260, 659
MwoI	GCNNNNNNNGC	1 cut(s)	476
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	3 cut(s)	654, 889, 973
NlaIII	CATG	3 cut(s)	268, 320, 630
NlaIV	GGNNCC	2 cut(s)	480, 656
NspI	RCATGY	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	981
PaqCI	CACCTGC	1 cut(s)	493
PceI	AGGCCT	1 cut(s)	600
PciI	ACATGT	1 cut(s)	264
PfeI	GAWTC	5 cut(s)	122, 131, 369, 623, 938
PflMI	CCANNNNNTGG	1 cut(s)	442
PfoI	TCCNGGA	1 cut(s)	657
PkrI	GCNGC	2 cut(s)	197, 208
PscI	ACATGT	1 cut(s)	264
PsiI	TTATAA	2 cut(s)	797, 953
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	258, 657
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	2 cut(s)	258, 657
PspN4I	GGNNCC	2 cut(s)	480, 656
PspPI	GGNCC	3 cut(s)	101, 256, 478
PsuI	RGATCY	1 cut(s)	654
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	4 cut(s)	173, 344, 390, 851
RsaNI	GTAC	4 cut(s)	172, 343, 389, 850
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	498, 702
SatI	GCNGC	2 cut(s)	196, 207
Sau3AI	GATC	3 cut(s)	654, 889, 973
Sau96I	GGNCC	3 cut(s)	101, 256, 478
ScrFI	CCNGG	3 cut(s)	29, 260, 659
SduI	GDGCHC	1 cut(s)	141
SfaNI	GCATC	1 cut(s)	670
SfcI	CTRYAG	1 cut(s)	273
SfuI	TTCGAA	1 cut(s)	981
SinI	GGWCC	1 cut(s)	256
Sse9I	AATT	5 cut(s)	358, 516, 924, 955, 977
SseBI	AGGCCT	1 cut(s)	600
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	3 cut(s)	113, 407, 602
SstI	GAGCTC	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	600
StyD4I	CCNGG	3 cut(s)	27, 258, 657
StyI	CCWWGG	4 cut(s)	186, 364, 459, 601
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	851
TaqI	TCGA	2 cut(s)	888, 981
TasI	AATT	5 cut(s)	358, 516, 924, 955, 977
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	5 cut(s)	122, 131, 369, 623, 938
Tru1I	TTAA	2 cut(s)	498, 702
Tru9I	TTAA	2 cut(s)	498, 702
TseI	GCWGC	2 cut(s)	195, 206
TspDTI	ATGAA	1 cut(s)	615
Van91I	CCANNNNNTGG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	955
XceI	RCATGY	1 cut(s)	268
XmaJI	CCTAGG	1 cut(s)	601
XspI	CTAG	3 cut(s)	113, 407, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.