Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

37335659 .. 37335970

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG335600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGACTCCGGTGAAAGCTCTAGGTCAAAATGGTGGTTTTACGTATAAGGATGCTGGTGTTGATATAGACGCCGGGTCGGAACTTGTTCGACGAATTGCCAAGATGGCTCTTGGGATTGGAGGCTTTGGAGGCTTTTTCCCTCTCGGTGATCATTTTCTTGTTGCTGGTACTGATGGTGTGGGAACTAAACTTAAGCTTGCATTTGATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

70

Amino Acids

7.19

Weight (kDa)

6.52

Isoelectric Point (pI)

22.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	1 cut(s)	169
AflII	CTTAAG	1 cut(s)	191
AhdI	GACNNNNNGTC	1 cut(s)	73
AluBI	AGCT	2 cut(s)	17, 196
AluI	AGCT	2 cut(s)	17, 196
Asp700I	GAANNNNTTC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	22, 158
BccI	CCATC	2 cut(s)	97, 167
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	73
BfaI	CTAG	1 cut(s)	20
BfrI	CTTAAG	1 cut(s)	191
BglI	GCCNNNNNGGC	1 cut(s)	104
Bme1390I	CCNGG	1 cut(s)	73
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	40
BpuMI	CCSGG	1 cut(s)	73
BsaAI	YACGTR	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	7
BseGI	GGATG	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	8, 72
Bsp143I	GATC	1 cut(s)	148
BspTI	CTTAAG	1 cut(s)	191
BssMI	GATC	1 cut(s)	148
BssNI	GRCGYC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	69
BstAFI	CTTAAG	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 129
BstSCI	CCNGG	1 cut(s)	71
BstSNI	TACGTA	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	198
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	168
CviJI	RGCY	5 cut(s)	17, 107, 123, 132, 196
CviKI_1	RGCY	5 cut(s)	17, 107, 123, 132, 196
CviQI	GTAC	1 cut(s)	168
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
DriI	GACNNNNNGTC	1 cut(s)	73
Eam1105I	GACNNNNNGTC	1 cut(s)	73
Eco105I	TACGTA	1 cut(s)	42
FaiI	YATR	2 cut(s)	45, 65
FbaI	TGATCA	1 cut(s)	148
FokI	GGATG	1 cut(s)	62
FspBI	CTAG	1 cut(s)	20
HapII	CCGG	2 cut(s)	8, 72
HgaI	GACGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	69
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	8, 72
HphI	GGTGA	2 cut(s)	22, 158
Hpy188I	TCNGA	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	93
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 129
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	148
LpnPI	CCDG	4 cut(s)	21, 39, 85, 150
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	41
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MluCI	AATT	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	3 cut(s)	113, 122, 150
MroXI	GAANNNNTTC	1 cut(s)	84
MseI	TTAA	1 cut(s)	192
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	2 cut(s)	8, 72
MspR9I	CCNGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	2 cut(s)	104, 129
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	84
Ppu21I	YACGTR	1 cut(s)	42
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	73
SetI	ASST	5 cut(s)	19, 25, 44, 198, 212
SfaNI	GCATC	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SnaBI	TACGTA	1 cut(s)	42
Sse9I	AATT	1 cut(s)	93
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	71
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	1 cut(s)	88
TasI	AATT	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
Vha464I	CTTAAG	1 cut(s)	191
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.