Rroxscaffold_1G00021190

Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
25983713 .. 25986206
2494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021190.1

Sequence Viewer

Length: 234 bp
ATGGCTCCGGGATTAGAGGCTTTGGAGGTCTTTTCCTTCTCGACTGCCAAGATGCCGGGTTTCTATGCAAAGGGTGAGCACGACCTCGGTAGTTTTGCGGTTGGAATTGTGAACAAGGAATCAGTGATTGATGGGAAAAACATTTTCGCTGGAGACGTCCTCATTGGCCTACCATCTAGTGGGGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGTGGGTAGCCACATCATAG

Protein Analysis

77

Amino Acids

7.94

Weight (kDa)

5.08

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 159
AccB7I CCANNNNNTGG 1 cut(s) 179
AciI CCGC 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 179
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 147
AoxI GGCC 1 cut(s) 166
AsuC2I CCSGG 2 cut(s) 9, 57
AsuHPI GGTGA 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 81
BccI CCATC 2 cut(s) 125, 181
BcnI CCSGG 2 cut(s) 9, 57
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 1 cut(s) 177
Bme1390I CCNGG 2 cut(s) 9, 57
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 9, 57
BmsI GCATC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 144, 176
BpmI CTGGAG 1 cut(s) 171
BpuMI CCSGG 2 cut(s) 9, 57
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 179
BshFI GGCC 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 2 cut(s) 8, 56
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsnI GGCC 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 81
BspACI CCGC 1 cut(s) 98
BspANI GGCC 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 85
BssNI GRCGYC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 7, 55
BsuRI GGCC 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 129
CviJI RGCY 4 cut(s) 5, 20, 168, 224
CviKI_1 RGCY 4 cut(s) 5, 20, 168, 224
Esp3I CGTCTC 1 cut(s) 147
FaiI YATR 3 cut(s) 66, 194, 232
FspBI CTAG 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 1 cut(s) 168
HapII CCGG 2 cut(s) 8, 56
Hin1I GRCGYC 1 cut(s) 156
HinfI GANTC 1 cut(s) 119
HpaII CCGG 2 cut(s) 8, 56
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 1 cut(s) 156
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 3 cut(s) 21, 69, 135
LweI GCATC 1 cut(s) 42
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 2 cut(s) 105, 195
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 5 cut(s) 10, 19, 95, 170, 200
MspI CCGG 2 cut(s) 8, 56
MspR9I CCNGG 2 cut(s) 9, 57
NciI CCSGG 2 cut(s) 9, 57
NlaIV GGNNCC 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 179
PfoI TCCNGGA 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 6
ScrFI CCNGG 2 cut(s) 9, 57
SduI GDGCHC 1 cut(s) 81
SetI ASST 4 cut(s) 30, 87, 159, 211
SfaNI GCATC 1 cut(s) 42
Sse9I AATT 2 cut(s) 105, 195
SsiI CCGC 1 cut(s) 98
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 7, 55
TaiI ACGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 41
TasI AATT 2 cut(s) 105, 195
TfiI GAWTC 1 cut(s) 119
TscAI CASTG 1 cut(s) 129
TspRI CASTG 1 cut(s) 129
Van91I CCANNNNNTGG 1 cut(s) 179
XspI CTAG 1 cut(s) 177
ZraI GACGTC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.