Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Forward (+)

54308061 .. 54308731

Gene Structure 671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG405900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCCGGGTTTCTATGCAGAGGGTGAGTATGACCTCAGTGGTTTTGTGGTTGGAATTGTGAAGAAGGAATCAGTGATTGATGGGAAAAACATTTTGGCTGGAGATGTCCTCATTGGCCTACCATCTAGTGGGGTTCATTCCAATGGTTTTCTCTTGTTTCTAGCTCATAGTGGGTTGTCTCTCAAAGACCAACTACTGGGTAACTCTGTTACCTTGGGTGAAGCTTTGATGGCCCCCACAGTGATATATGTTAAGCAGGTGCTTGACATAATTAGCAAGGGAAGTGTGAAGGGTACCACATCACAGGAGGTGGTCTCACCGACAATATACCTAGAGTATTTCCAAAAGGCCGAGGAGCTGTCATCTATAAAGAAGATTCATGGGAAGTCCCAACTGTTTTCAAATGGATCCAGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

139

Amino Acids

14.88

Weight (kDa)

6.83

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	33 - 98	1.6e-08	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	247
Acc65I	GGTACC	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	293
AccB7I	CCANNNNNTGG	2 cut(s)	128, 196
AclWI	GGATC	2 cut(s)	402, 415
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	2 cut(s)	128, 196
AgsI	TTSAA	1 cut(s)	402
AjnI	CCWGG	1 cut(s)	410
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	3 cut(s)	164, 224, 358
AluI	AGCT	3 cut(s)	164, 224, 358
Alw26I	GTCTC	2 cut(s)	183, 319
AlwI	GGATC	2 cut(s)	402, 415
AoxI	GGCC	3 cut(s)	115, 231, 348
Asp718I	GGTACC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	3 cut(s)	35, 230, 309
BamHI	GGATCC	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	293
BccI	CCATC	3 cut(s)	74, 130, 223
BciT130I	CCWGG	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	2 cut(s)	183, 319
BfaI	CTAG	3 cut(s)	126, 161, 332
BfuAI	ACCTGC	1 cut(s)	247
Bme1390I	CCNGG	2 cut(s)	6, 412
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	3 cut(s)	234, 295, 409
BmrFI	CCNGG	2 cut(s)	6, 412
BmrI	ACTGGG	1 cut(s)	206
BmuI	ACTGGG	1 cut(s)	206
BplI	GAGNNNNNCTC	4 cut(s)	93, 125, 299, 331
BpmI	CTGGAG	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	213, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 196
Bse1I	ACTGG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	412
BseDI	CCNNGG	2 cut(s)	213, 351
BseLI	CCNNNNNNNGG	2 cut(s)	128, 196
BseMII	CTCAG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	368
BshFI	GGCC	3 cut(s)	117, 233, 350
BshNI	GGYRCC	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	128, 196
BsmAI	GTCTC	2 cut(s)	183, 319
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	3 cut(s)	117, 233, 350
Bso31I	GGTCTC	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	407
BspANI	GGCC	3 cut(s)	117, 233, 350
BspCNI	CTCAG	1 cut(s)	48
BspLI	GGNNCC	3 cut(s)	234, 295, 409
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	2 cut(s)	402, 415
BspT107I	GGYRCC	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	2 cut(s)	213, 351
BssMI	GATC	1 cut(s)	407
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	2 cut(s)	241, 396
BstDEI	CTNAG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	410
BstMAI	GTCTC	2 cut(s)	183, 319
BstMBI	GATC	1 cut(s)	407
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	412
BstSCI	CCNGG	2 cut(s)	4, 410
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BsuRI	GGCC	3 cut(s)	117, 233, 350
BtsIMutI	CAGTG	3 cut(s)	43, 78, 246
BveI	ACCTGC	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	1 cut(s)	380
CviJI	RGCY	7 cut(s)	98, 117, 164, 224, 233, 350, 358
CviKI_1	RGCY	7 cut(s)	98, 117, 164, 224, 233, 350, 358
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	1 cut(s)	409
DpnII	GATC	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	410
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	383
FaiI	YATR	9 cut(s)	15, 30, 168, 247, 249, 269, 328, 368, 381
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	1 cut(s)	379
FspBI	CTAG	3 cut(s)	126, 161, 332
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	3 cut(s)	117, 233, 350
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	1 cut(s)	383
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	2 cut(s)	68, 376
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	3 cut(s)	35, 230, 309
HpyAV	CCTTC	2 cut(s)	58, 283
HpyCH4III	ACNGT	2 cut(s)	241, 396
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	383
KpnI	GGTACC	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	407
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	6 cut(s)	18, 84, 182, 242, 290, 397
MaeI	CTAG	3 cut(s)	126, 161, 332
MaeIII	GTNAC	2 cut(s)	200, 208
MalI	GATC	1 cut(s)	409
MboI	GATC	1 cut(s)	407
MboII	GAAGA	2 cut(s)	73, 385
MflI	RGATCY	1 cut(s)	407
MluCI	AATT	2 cut(s)	54, 270
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	6 cut(s)	13, 44, 119, 301, 346, 408
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	6, 412
MvaI	CCWGG	1 cut(s)	412
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	407
NlaIII	CATG	1 cut(s)	383
NlaIV	GGNNCC	3 cut(s)	234, 295, 409
NmeAIII	GCCGAG	1 cut(s)	376
PaqCI	CACCTGC	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	68, 376
PflMI	CCANNNNNTGG	2 cut(s)	128, 196
PfoI	TCCNGGA	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	410
PspN4I	GGNNCC	3 cut(s)	234, 295, 409
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	407
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	407
Sau96I	GGNCC	1 cut(s)	232
ScrFI	CCNGG	2 cut(s)	6, 412
SetI	ASST	9 cut(s)	36, 166, 215, 226, 261, 312, 333, 360, 419
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	54, 270
SspMI	CTAG	3 cut(s)	126, 161, 332
StyD4I	CCNGG	2 cut(s)	4, 410
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	241, 396
TasI	AATT	2 cut(s)	54, 270
TfiI	GAWTC	2 cut(s)	68, 376
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	3 cut(s)	43, 78, 246
TspDTI	ATGAA	2 cut(s)	125, 368
TspRI	CASTG	3 cut(s)	43, 78, 246
Van91I	CCANNNNNTGG	2 cut(s)	128, 196
XspI	CTAG	3 cut(s)	126, 161, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.