Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Forward (+)

20395510 .. 20395893

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0213600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGGAAGGAAGATGGTAGCTGGTAGTGCCATTGGAGGTATGAAGGAGACACAAGAGATGATTGATTTTGCTGCTAAACATAACATAACAGCTGACATCAAGGTTATCGCGATCAACTACCTGAACATGGCCATGGAGAGCCTTGCCAAAGCAGACGTCAAGTATCGATTTATAATTGACATTGGAAACACATTGATTTCTGCCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

69

Amino Acids

7.5

Weight (kDa)

8.06

Isoelectric Point (pI)

23.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
AatII	GACGTC	1 cut(s)	159
AccII	CGCG	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	127
AluBI	AGCT	2 cut(s)	20, 92
AluI	AGCT	2 cut(s)	20, 92
Alw26I	GTCTC	1 cut(s)	41
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	1 cut(s)	71
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
BalI	TGGCCA	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	41
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bsa29I	ATCGAT	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseCI	ATCGAT	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	131
BshVI	ATCGAT	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	111
Bsp19I	CCATGG	1 cut(s)	132
Bsp68I	TCGCGA	1 cut(s)	110
BspANI	GGCC	1 cut(s)	131
BspDI	ATCGAT	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	111
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	110
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	131
BsuTUI	ATCGAT	1 cut(s)	166
BtgI	CCRYGG	1 cut(s)	132
BtuMI	TCGCGA	1 cut(s)	110
ClaI	ATCGAT	1 cut(s)	166
CviAII	CATG	2 cut(s)	127, 133
CviJI	RGCY	4 cut(s)	20, 92, 131, 141
CviKI_1	RGCY	4 cut(s)	20, 92, 131, 141
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	2 cut(s)	130, 136
FaiI	YATR	6 cut(s)	41, 81, 86, 128, 134, 173
FatI	CATG	2 cut(s)	126, 132
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	130, 136
Hpy188III	TCNNGA	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	130, 136
Kzo9I	GATC	1 cut(s)	111
LpnPI	CCDG	2 cut(s)	6, 134
Lsp1109I	GCAGC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	156
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	1 cut(s)	174
MluNI	TGGCCA	1 cut(s)	131
MnlI	CCTC	1 cut(s)	29
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	1 cut(s)	208
MslI	CAYNNNNRTG	1 cut(s)	131
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	130, 136
NruI	TCGCGA	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	73
PsiI	TTATAA	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	92
RruI	TCGCGA	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	208
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	111
SetI	ASST	6 cut(s)	22, 40, 94, 105, 123, 159
SgeI	CNNG	9 cut(s)	33, 65, 112, 121, 133, 139, 145, 155, 172
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	132
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	174
Tru1I	TTAA	1 cut(s)	208
Tru9I	TTAA	1 cut(s)	208
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	56
ZraI	GACGTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.