Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

35059322 .. 35060106

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG295500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTTTCTTTTCAATTTATTAAGTCCAGGCACACTAGCCATGTCCACCGGCCTCAAAGCAAACACAGAGCTTGCTCTTGGCTTTGCCTCTTCTTCAAGACCCTCTTATTGGAAACCCAACTCCACCCATACCCAGCTATCCAGATTGCCGTCCGGGTCTCTCTCCAACAACTTCTCCGGCCTCTCTATGGCTTCGTCAAGTGGAGTTTCCCAGAGCAAACGCGTATGCTCACTTTCGAAGAATGATTCCGGTGAAAGCTATGATCAAAATGATGGTCTGACGTATAAGGGTGCTGGTGTTGATATAGATGCCGGATCGGAACTTGTTCGACGAATTGCCAAGATGGCTCCTGGGATTGGAGGCTTTGGAGGTCTTTTCCCTCTCGGTATGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

132

Amino Acids

13.79

Weight (kDa)

9.46

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	222
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	392
AfiI	CCNNNNNNNGG	3 cut(s)	108, 187, 356
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	13, 96
AjnI	CCWGG	2 cut(s)	25, 349
AluBI	AGCT	3 cut(s)	70, 136, 258
AluI	AGCT	3 cut(s)	70, 136, 258
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	322
AoxI	GGCC	2 cut(s)	49, 178
ApoI	RAATTY	1 cut(s)	392
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
Asp700I	GAANNNNTTC	1 cut(s)	324
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	263
AsuII	TTCGAA	1 cut(s)	236
BccI	CCATC	2 cut(s)	266, 337
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	2 cut(s)	27, 351
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	344
Bme1390I	CCNGG	3 cut(s)	27, 154, 351
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	3 cut(s)	27, 154, 351
BmsI	GCATC	1 cut(s)	298
Bpu14I	TTCGAA	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	350
BsaWI	WCCGGW	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 187, 356
Bse118I	RCCGGY	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	27, 351
BseDI	CCNNGG	1 cut(s)	350
BseLI	CCNNNNNNNGG	3 cut(s)	108, 187, 356
BseYI	CCCAGC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	51, 180
BsiSI	CCGG	5 cut(s)	48, 153, 177, 249, 312
BslI	CCNNNNNNNGG	3 cut(s)	108, 187, 356
BsmAI	GTCTC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	51, 180
Bso31I	GGTCTC	1 cut(s)	162
Bsp119I	TTCGAA	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	262, 314
BspANI	GGCC	2 cut(s)	51, 180
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	322
BspT104I	TTCGAA	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	2 cut(s)	262, 314
Bst2UI	CCWGG	2 cut(s)	27, 351
Bst6I	CTCTTC	1 cut(s)	94
BstBI	TTCGAA	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	265, 317
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	2 cut(s)	262, 314
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	2 cut(s)	27, 351
BstSCI	CCNGG	3 cut(s)	25, 152, 349
BstUI	CGCG	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	51, 180
Cac8I	GCNNGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	47
CviAII	CATG	1 cut(s)	40
DpnI	GATC	2 cut(s)	264, 316
DpnII	GATC	2 cut(s)	262, 314
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	162
EcoRII	CCWGG	2 cut(s)	25, 349
FaeI	CATG	1 cut(s)	43
FaiI	YATR	8 cut(s)	41, 129, 188, 226, 261, 285, 305, 389
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FatI	CATG	1 cut(s)	39
FbaI	TGATCA	1 cut(s)	262
FspBI	CTAG	1 cut(s)	35
GsaI	CCCAGC	1 cut(s)	136
HaeIII	GGCC	2 cut(s)	51, 180
HapII	CCGG	5 cut(s)	48, 153, 177, 249, 312
Hin1II	CATG	1 cut(s)	43
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	5 cut(s)	48, 153, 177, 249, 312
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	2 cut(s)	279, 319
Hpy188III	TCNNGA	2 cut(s)	96, 141
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	1 cut(s)	333
HpyCH4IV	ACGT	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpySE526I	ACGT	1 cut(s)	281
Hsp92II	CATG	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	262, 314
LmnI	GCTCC	1 cut(s)	352
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	281
MalI	GATC	2 cut(s)	264, 316
MboI	GATC	2 cut(s)	262, 314
MboII	GAAGA	3 cut(s)	81, 84, 250
MluCI	AATT	3 cut(s)	13, 333, 392
MluI	ACGCGT	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	7 cut(s)	62, 97, 112, 191, 353, 362, 390
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	1 cut(s)	20
MspI	CCGG	5 cut(s)	48, 153, 177, 249, 312
MspR9I	CCNGG	3 cut(s)	27, 154, 351
MvaI	CCWGG	2 cut(s)	27, 351
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	344
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	2 cut(s)	262, 314
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	348
NspV	TTCGAA	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	25, 349
PspFI	CCCAGC	1 cut(s)	132
PspGI	CCWGG	2 cut(s)	25, 349
PspN4I	GGNNCC	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	20
Sau3AI	GATC	2 cut(s)	262, 314
ScrFI	CCNGG	3 cut(s)	27, 154, 351
SetI	ASST	5 cut(s)	72, 138, 260, 284, 373
SfaNI	GCATC	1 cut(s)	298
SfuI	TTCGAA	1 cut(s)	236
Sse9I	AATT	3 cut(s)	13, 333, 392
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	3 cut(s)	25, 152, 349
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	2 cut(s)	236, 328
TasI	AATT	3 cut(s)	13, 333, 392
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
XapI	RAATTY	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.