Rroxscaffold_6G00402130

Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
24509453 .. 24511062
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402130.1

Sequence Viewer

Length: 375 bp
ATGACCCAATCAGCGATTATGCTCGTAGAAGATTTCTTACTTGTTATTCCATTGGGGTTTGTCAATCAACTTTTGAGTCAATCAAGATGCTGCCTTGATGTTTATCTGGCTGAAAAGGTTATCAAGGGAATTATGGATGGTTGCCAACAATCTGACTGTGCTCTTTTAGGTGGAGAGCATTCGGTGAATTGCATATATTTTCAGACCGCCGAGATGCTTTGGGTTTCTATGCGAGAGGGTGAGTATGACCTCGGTGGTTTTGCGGTTGGAATTGTGAAGAAGGAATCAGTGATTGATGGGAAAAATATTTTGGCTGGAGATGTCCTCATTGGCCTTCCATCTAGTGGGGTTCATTCCAATGGTTTTCTCTTGTAA

Protein Analysis

124

Amino Acids

13.39

Weight (kDa)

4.52

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 344
AciI CCGC 2 cut(s) 207, 263
AfiI CCNNNNNNNGG 1 cut(s) 344
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
Alw21I GWGCWC 1 cut(s) 163
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 196, 251
BarI GAAGNNNNNNTAC 2 cut(s) 21, 53
Bbv12I GWGCWC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 77
BccI CCATC 3 cut(s) 131, 290, 346
BfaI CTAG 1 cut(s) 342
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
BmsI GCATC 2 cut(s) 77, 204
BplI GAGNNNNNCTC 2 cut(s) 309, 341
BpmI CTGGAG 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse8I GATNNNNATC 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 142
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 344
BseXI GCAGC 1 cut(s) 77
BshFI GGCC 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 344
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 163
BspACI CCGC 2 cut(s) 207, 263
BspANI GGCC 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 158
BstF5I GGATG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 77
BsuRI GGCC 1 cut(s) 333
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 294
CviJI RGCY 3 cut(s) 110, 314, 333
CviKI_1 RGCY 3 cut(s) 110, 314, 333
FaiI YATR 6 cut(s) 20, 134, 194, 196, 230, 246
Fnu4HI GCNGC 1 cut(s) 91
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 91
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 91
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 1 cut(s) 333
HinfI GANTC 2 cut(s) 76, 284
HphI GGTGA 2 cut(s) 196, 251
Hpy188I TCNGA 2 cut(s) 154, 204
Hpy188III TCNNGA 1 cut(s) 84
HpyAV CCTTC 2 cut(s) 274, 344
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 192
LpnPI CCDG 2 cut(s) 92, 300
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 2 cut(s) 77, 204
MaeI CTAG 1 cut(s) 342
MboII GAAGA 2 cut(s) 41, 289
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 3 cut(s) 129, 187, 270
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 3 cut(s) 229, 260, 335
MslI CAYNNNNRTG 1 cut(s) 357
Mva1269I GAATGC 1 cut(s) 178
NmeAIII GCCGAG 1 cut(s) 235
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 344
PkrI GCNGC 1 cut(s) 92
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 357
SatI GCNGC 1 cut(s) 91
SchI GAGTC 1 cut(s) 85
SduI GDGCHC 1 cut(s) 163
SetI ASST 3 cut(s) 120, 172, 252
SfaNI GCATC 2 cut(s) 77, 204
SmiMI CAYNNNNRTG 1 cut(s) 357
Sse9I AATT 3 cut(s) 129, 187, 270
SsiI CCGC 2 cut(s) 207, 263
SspI AATATT 1 cut(s) 307
SspMI CTAG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 158
TasI AATT 3 cut(s) 129, 187, 270
TfiI GAWTC 1 cut(s) 284
TscAI CASTG 1 cut(s) 294
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 341
TspRI CASTG 1 cut(s) 294
Van91I CCANNNNNTGG 1 cut(s) 344
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.