Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

29883101 .. 29884019

Gene Structure 919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49052

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCCGGGTTTCTATGCAGAGGGTGAGTATGACCTCAGTGGTTTTGTGCTTGGAATTGTGAAGAAGGAATTAGTGATTGATGGGAAAATCATTTTGGCTCGAGATGTTCTGATTGGCCTACCAGCCAGTGGGGTTCATTCCAATGGTTTTTCTCTTGTAAGAAGGGTTCTAGCTCATAGTGGGTTGTCTCTGACAGACCAACTACTGGGTAGCTCTCTGCTGAAAATGCTTTCTGCTTTTTGCTTTTGCTTGCTGAAACAGGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGGTCTCACCGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATAAAGATTCATGGGAAGTGTCAGCTGTTTTCAAATGGATCCAGGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGAAGAACTTTTAATATGGGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGACATCCCACAGAATACTTAAAGATGGAAATGGAGCTTACTGTATTGGTGAGGTTATAACTGGTGAAGGAGTGAGTTATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

193

Amino Acids

20.75

Weight (kDa)

8.42

Isoelectric Point (pI)

28.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	35 - 190	4.1e-25	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AccB7I	CCANNNNNTGG	2 cut(s)	128, 205
AclWI	GGATC	2 cut(s)	406, 419
AfiI	CCNNNNNNNGG	2 cut(s)	128, 205
AgsI	TTSAA	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	414
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	5 cut(s)	173, 213, 365, 398, 533
AluI	AGCT	5 cut(s)	173, 213, 365, 398, 533
Alw26I	GTCTC	3 cut(s)	192, 326, 491
AlwI	GGATC	2 cut(s)	406, 419
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	2 cut(s)	115, 355
AspA2I	CCTAGG	1 cut(s)	358
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	4 cut(s)	35, 316, 557, 572
AvaI	CYCGRG	1 cut(s)	99
AvrII	CCTAGG	1 cut(s)	358
BamHI	GGATCC	1 cut(s)	411
BccI	CCATC	3 cut(s)	74, 469, 515
BciT130I	CCWGG	1 cut(s)	416
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	3 cut(s)	192, 326, 491
BfaI	CTAG	3 cut(s)	170, 339, 359
BlnI	CCTAGG	1 cut(s)	358
Bme1390I	CCNGG	2 cut(s)	6, 416
BmeT110I	CYCGRG	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	413
BmrFI	CCNGG	2 cut(s)	6, 416
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	1 cut(s)	427
BmuI	ACTGGG	1 cut(s)	215
BplI	GAGNNNNNCTC	2 cut(s)	306, 338
BpuMI	CCSGG	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 205
Bse1I	ACTGG	3 cut(s)	126, 210, 562
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	2 cut(s)	480, 500
BseLI	CCNNNNNNNGG	2 cut(s)	128, 205
BseMII	CTCAG	1 cut(s)	49
BseNI	ACTGG	3 cut(s)	126, 210, 562
BshFI	GGCC	2 cut(s)	117, 357
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	128, 205
BsmAI	GTCTC	3 cut(s)	192, 326, 491
BsnI	GGCC	2 cut(s)	117, 357
Bso31I	GGTCTC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	99
Bsp143I	GATC	1 cut(s)	411
BspANI	GGCC	2 cut(s)	117, 357
BspCNI	CTCAG	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	413
BspPI	GGATC	2 cut(s)	406, 419
BspTNI	GGTCTC	1 cut(s)	326
BsrI	ACTGG	3 cut(s)	126, 210, 562
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	539
Bst6I	CTCTTC	1 cut(s)	421
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	480, 500
BstKTI	GATC	1 cut(s)	414
BstMAI	GTCTC	3 cut(s)	192, 326, 491
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	4, 414
BstX2I	RGATCY	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	117, 357
BtsCI	GGATG	2 cut(s)	480, 500
BtsIMutI	CAGTG	2 cut(s)	43, 133
Cac8I	GCNNGC	1 cut(s)	251
CviAII	CATG	1 cut(s)	384
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	358
Eco147I	AGGCCT	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	1 cut(s)	387
FatI	CATG	1 cut(s)	383
FokI	GGATG	2 cut(s)	487, 487
FspBI	CTAG	3 cut(s)	170, 339, 359
HaeIII	GGCC	2 cut(s)	117, 357
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	1 cut(s)	387
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	4 cut(s)	35, 316, 557, 572
Hpy188I	TCNGA	2 cut(s)	111, 192
Hpy188III	TCNNGA	1 cut(s)	101
HpyAV	CCTTC	4 cut(s)	58, 156, 286, 557
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	387
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	2 cut(s)	362, 530
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	3 cut(s)	170, 339, 359
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	4 cut(s)	73, 438, 446, 462
MflI	RGATCY	1 cut(s)	411
MluCI	AATT	3 cut(s)	54, 68, 273
MnlI	CCTC	6 cut(s)	13, 44, 278, 308, 412, 541
MseI	TTAA	2 cut(s)	459, 516
MslI	CAYNNNNRTG	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	6, 416
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	1 cut(s)	226
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	1 cut(s)	387
NlaIV	GGNNCC	1 cut(s)	413
PaeR7I	CTCGAG	1 cut(s)	99
PceI	AGGCCT	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	380
PflMI	CCANNNNNTGG	2 cut(s)	128, 205
PfoI	TCCNGGA	1 cut(s)	414
PsiI	TTATAA	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	413
PsrI	GAACNNNNNNTAC	2 cut(s)	150, 182
PsuI	RGATCY	1 cut(s)	411
PvuII	CAGCTG	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	459, 516
Sau3AI	GATC	1 cut(s)	411
ScrFI	CCNGG	2 cut(s)	6, 416
SfaNI	GCATC	1 cut(s)	427
Sfr274I	CTCGAG	1 cut(s)	99
SlaI	CTCGAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
Sse9I	AATT	3 cut(s)	54, 68, 273
SseBI	AGGCCT	1 cut(s)	357
SspMI	CTAG	3 cut(s)	170, 339, 359
StuI	AGGCCT	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	4, 414
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	1 cut(s)	539
TaqI	TCGA	1 cut(s)	100
TasI	AATT	3 cut(s)	54, 68, 273
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	2 cut(s)	459, 516
Tru9I	TTAA	2 cut(s)	459, 516
TscAI	CASTG	2 cut(s)	43, 133
TspDTI	ATGAA	2 cut(s)	125, 372
TspRI	CASTG	2 cut(s)	43, 133
Van91I	CCANNNNNTGG	2 cut(s)	128, 205
XhoI	CTCGAG	1 cut(s)	99
XmaJI	CCTAGG	1 cut(s)	358
XspI	CTAG	3 cut(s)	170, 339, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.