Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Forward (+)

72398317 .. 72401243

Gene Structure 2927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035832

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTCAAAGGGGTCAAGATATGTAACTTATGAGTTAGGGGTGGAAAAGATCTGGGTGCTCTGTGCAATATTTCTTACTGTTTTTCCATTGGGGTTTGTCGATCAACTTTTGAGTGAATCAAGATGGTCACACCATATAAGGGAAGGAAGGATGAGTCAAGTTGCAGTCTTAAAACATCCATACAATTACTTAAAAGTACTCAAATCATACCAGAGCTGCCTTGATGTTTATCTGGCTGAAAAGGTTATCAAGGGAATTGTGGATGGTTGCCAACAATCTGACTGTGCTCTTTTAGGTGGACAGACTGCCGAGATGCCGGGTTTCTATGCAGAGGGTGAGTATGACCTCAGTGGTTTTGTGGTTGGAATTGTGAAGAAGGAATCAGTGATTGATGGGAAAAACATTTTGGCTGGAGATGTCCTCATTGGCCTACCATCCAATGGGGTTCATTCCAATGGTTTTCTCTTGGTTCTAGCTCATAGTGGGTTATCTCTGAAAGACCAACTACTGGGTAACTCTGTTACCTTGGGTGAAGCTTTGATGGCCCCCACAGTGATATATGTAAAGCAGGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGTAGCCCATATCACAGGAGCTGAGGGTGTTGTGATCATTTGCTTCACTTCTGGGAAAGGATATCCTGGAAATCAACCATCCCAAAACTGGCAGCATCGCATGGGCAAGTTGCCTAGTTTTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

244

Amino Acids

26.28

Weight (kDa)

7.66

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS	PF00586	76 - 124	2.1e-06	AIR synthase related protein, N-terminal domain
AIRS_C	PF02769	137 - 220	2e-12	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	559
Acc36I	ACCTGC	1 cut(s)	559
AccB7I	CCANNNNNTGG	2 cut(s)	440, 508
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	4 cut(s)	139, 440, 508, 693
AjnI	CCWGG	1 cut(s)	670
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	5 cut(s)	216, 476, 536, 626, 729
AluI	AGCT	5 cut(s)	216, 476, 536, 626, 729
Alw21I	GWGCWC	2 cut(s)	60, 289
AlwNI	CAGNNNCTG	1 cut(s)	626
AoxI	GGCC	2 cut(s)	427, 543
ApeKI	GCWGC	2 cut(s)	216, 697
AspS9I	GGNCC	1 cut(s)	544
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	347, 542
Bbv12I	GWGCWC	2 cut(s)	60, 289
BbvCI	CCTCAGC	1 cut(s)	627
BbvI	GCAGC	2 cut(s)	203, 709
BccI	CCATC	6 cut(s)	117, 257, 386, 442, 535, 691
BciT130I	CCWGG	1 cut(s)	672
BclI	TGATCA	1 cut(s)	639
BcnI	CCSGG	1 cut(s)	318
BfaI	CTAG	2 cut(s)	473, 720
BfuAI	ACCTGC	1 cut(s)	559
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	2 cut(s)	217, 698
BlsI	GCNGC	2 cut(s)	218, 699
BmcAI	AGTACT	1 cut(s)	198
Bme1390I	CCNGG	2 cut(s)	318, 672
BmgT120I	GGNCC	1 cut(s)	544
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	2 cut(s)	318, 672
BmrI	ACTGGG	1 cut(s)	518
BmsI	GCATC	2 cut(s)	303, 709
BmuI	ACTGGG	1 cut(s)	518
BplI	GAGNNNNNCTC	2 cut(s)	405, 437
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	627
BpuMI	CCSGG	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 440, 508, 693
Bse1I	ACTGG	2 cut(s)	513, 698
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	672
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	5 cut(s)	156, 175, 268, 434, 683
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	4 cut(s)	139, 440, 508, 693
BseMII	CTCAG	2 cut(s)	361, 618
BseNI	ACTGG	2 cut(s)	513, 698
BseXI	GCAGC	2 cut(s)	203, 709
BshFI	GGCC	2 cut(s)	429, 545
BsiHKAI	GWGCWC	2 cut(s)	60, 289
BsiSI	CCGG	1 cut(s)	317
BslI	CCNNNNNNNGG	4 cut(s)	139, 440, 508, 693
BsnI	GGCC	2 cut(s)	429, 545
Bsp1286I	GDGCHC	2 cut(s)	60, 289
Bsp143I	GATC	3 cut(s)	48, 100, 639
BspANI	GGCC	2 cut(s)	429, 545
BspCNI	CTCAG	2 cut(s)	360, 619
BspLI	GGNNCC	1 cut(s)	546
BspMI	ACCTGC	1 cut(s)	559
BsrI	ACTGG	2 cut(s)	513, 698
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	3 cut(s)	48, 100, 639
BssT1I	CCWWGG	1 cut(s)	525
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	3 cut(s)	79, 284, 553
BstDEI	CTNAG	2 cut(s)	347, 627
BstF5I	GGATG	5 cut(s)	156, 175, 268, 434, 683
BstKTI	GATC	3 cut(s)	51, 103, 642
BstMBI	GATC	3 cut(s)	48, 100, 639
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	1 cut(s)	672
BstSCI	CCNGG	2 cut(s)	316, 670
BstV1I	GCAGC	2 cut(s)	203, 709
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	429, 545
BtgZI	GCGATG	1 cut(s)	686
BtsCI	GGATG	5 cut(s)	156, 175, 268, 434, 683
BtsIMutI	CAGTG	3 cut(s)	355, 390, 558
BveI	ACCTGC	1 cut(s)	559
CaiI	CAGNNNCTG	1 cut(s)	626
Cfr13I	GGNCC	1 cut(s)	544
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	1 cut(s)	706
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	2 cut(s)	347, 627
DpnI	GATC	3 cut(s)	50, 102, 641
DpnII	GATC	3 cut(s)	48, 100, 639
Eco130I	CCWWGG	1 cut(s)	525
Eco32I	GATATC	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	670
EcoRV	GATATC	1 cut(s)	668
EcoT14I	CCWWGG	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	1 cut(s)	709
FatI	CATG	1 cut(s)	705
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	2 cut(s)	217, 698
FokI	GGATG	5 cut(s)	162, 163, 275, 421, 670
Fsp4HI	GCNGC	2 cut(s)	217, 698
FspBI	CTAG	2 cut(s)	473, 720
GluI	GCNGC	2 cut(s)	217, 698
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	429, 545
HapII	CCGG	1 cut(s)	317
Hin1II	CATG	1 cut(s)	709
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	3 cut(s)	116, 154, 380
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	2 cut(s)	347, 542
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	2 cut(s)	280, 495
Hpy188III	TCNNGA	2 cut(s)	15, 120
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	4 cut(s)	137, 141, 370, 595
HpyCH4III	ACNGT	3 cut(s)	79, 284, 553
HpyCH4V	TGCA	3 cut(s)	65, 164, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	2 cut(s)	347, 627
Hsp92II	CATG	1 cut(s)	709
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	3 cut(s)	48, 100, 639
LmnI	GCTCC	1 cut(s)	623
Lsp1109I	GCAGC	2 cut(s)	203, 709
LweI	GCATC	2 cut(s)	303, 709
MaeI	CTAG	2 cut(s)	473, 720
MaeIII	GTNAC	4 cut(s)	22, 126, 512, 520
MalI	GATC	3 cut(s)	50, 102, 641
MboI	GATC	3 cut(s)	48, 100, 639
MboII	GAAGA	1 cut(s)	385
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	2 cut(s)	60, 289
MluCI	AATT	4 cut(s)	184, 255, 366, 582
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	5 cut(s)	325, 356, 431, 587, 622
MseI	TTAA	2 cut(s)	170, 191
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	2 cut(s)	318, 672
MvaI	CCWGG	1 cut(s)	672
MwoI	GCNNNNNNNGC	1 cut(s)	542
NciI	CCSGG	1 cut(s)	318
NdeII	GATC	3 cut(s)	48, 100, 639
NlaIII	CATG	1 cut(s)	709
NlaIV	GGNNCC	1 cut(s)	546
NmeAIII	GCCGAG	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	126
PaqCI	CACCTGC	1 cut(s)	559
PfeI	GAWTC	2 cut(s)	116, 380
PflMI	CCANNNNNTGG	2 cut(s)	440, 508
PfoI	TCCNGGA	1 cut(s)	670
PkrI	GCNGC	2 cut(s)	218, 699
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	670
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	1 cut(s)	544
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	1 cut(s)	48
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	2 cut(s)	170, 191
SatI	GCNGC	2 cut(s)	217, 698
Sau3AI	GATC	3 cut(s)	48, 100, 639
Sau96I	GGNCC	1 cut(s)	544
ScaI	AGTACT	1 cut(s)	198
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	318, 672
SduI	GDGCHC	2 cut(s)	60, 289
SfaNI	GCATC	2 cut(s)	303, 709
SmiMI	CAYNNNNRTG	1 cut(s)	453
Sse9I	AATT	4 cut(s)	184, 255, 366, 582
SspI	AATATT	1 cut(s)	69
SspMI	CTAG	2 cut(s)	473, 720
StyD4I	CCNGG	2 cut(s)	316, 670
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	3 cut(s)	79, 284, 553
TaqI	TCGA	1 cut(s)	99
TasI	AATT	4 cut(s)	184, 255, 366, 582
TatI	WGTACW	1 cut(s)	196
TfiI	GAWTC	2 cut(s)	116, 380
Tru1I	TTAA	2 cut(s)	170, 191
Tru9I	TTAA	2 cut(s)	170, 191
TscAI	CASTG	3 cut(s)	355, 390, 558
TseFI	GTSAC	1 cut(s)	126
TseI	GCWGC	2 cut(s)	216, 697
Tsp45I	GTSAC	1 cut(s)	126
TspDTI	ATGAA	1 cut(s)	437
TspRI	CASTG	3 cut(s)	355, 390, 558
Van91I	CCANNNNNTGG	2 cut(s)	440, 508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	690
XspI	CTAG	2 cut(s)	473, 720
ZrmI	AGTACT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.