Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Forward (+)

32974867 .. 32976809

Gene Structure 1943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002372

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTCCACCGCCCTCAAAGCAAAAGCAGAGCTTGCTCTTGGCTTTGCCTCTTCTTCCAGACCCTCTTATGCGAAACCCAACTCCAGCCATACCCAGCTATCCACATTGCCATCGGGGTCTCTCCCCAACAACTTCTCCGGCCTCTCTATGGCTTCATCAAGTGGAATTTCTCAGAGCAAGTGCTTATGCTCACTTTCGAAGAATGACTCCGGTGAAAGCTCTGGTCACAATGGTGGTTTTACGTATAAGGATGCGGGTGTTAATATAGACGCCGGGTCGGAACTTGTTCGACGAATTGCCAAGTGGCTCCTGAGATTGGAGGCTTTGGAGGTCTTTTCCCTATCGTTTGTTTCTTGGGATGATCAAGTTATATGGTGGACAGGTGATCATTATCTTGTTGCTGGTACTGATGGTGTGGGAACTAAACTTAAGCTTGCATTTGATACCGGAATTTATGAGACCATTGGTATTGATTTGGTTGCTATGAGTGTCAATGATATTGTCACTTCTGGAGCCAAGCCATTATTTTTCCTTGATTACATTAGTACAAGCCGCCTTGATGTTGATCTTGCTGAAAAGGTTATCAAGGGAATTGTCGATGGTTGCCAACAATCAGACTGTCCTCTTTTGGGTGGAGAGACTGCCGAGACGCCGGGTTTCTATGCAGAGGGTGAGTTTGACCTTTGTGGTGCTGCGTTTGGAATTGTGCACAAGGAATCAGTGATTGATGGTAAAAACATTGTGGCTGGAGATGTCCTCTTGGTTCTAGCTCATAGTGGGTTGTCTCTGAAGGACCAACTACCGGGTAAATCTGTTACCTTAGGTGAAGCTTTGATGGCCCCCACACTGACATATGTTAAGCAGCAAGGGAGGTGTGAAGGGGTAGCCCACATCACAGGAGGTGGTTTCACCGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATAATGATTCATGGGAAGTCCCAGCTGTTTTCAAATGGATCCAAGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGACGAACTTTTAATATGGGTATCGGGATGGTTCTTGTTGTGAGTAAGGAGGCATCCCACAGAATACTTGAAGATGGAAATGGAGCTTATTGCATTGGTGAGGTTGTAACTGGTGAAGGAGTGAGTTATATACAAAATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

392

Amino Acids

41.52

Weight (kDa)

4.97

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS	PF00586	120 - 236	2.5e-24	AIR synthase related protein, N-terminal domain
AIRS_C	PF02769	262 - 385	3.5e-20	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	9, 254, 553
AclWI	GGATC	2 cut(s)	991, 1004
AcsI	RAATTY	2 cut(s)	165, 450
AcuI	CTGAAG	1 cut(s)	809
AcyI	GRCGYC	2 cut(s)	270, 650
AfaI	GTAC	2 cut(s)	406, 547
AfiI	CCNNNNNNNGG	4 cut(s)	148, 316, 629, 802
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	2 cut(s)	991, 1103
AhdI	GACNNNNNGTC	1 cut(s)	274
AleI	CACNNNNGTG	1 cut(s)	231
AluBI	AGCT	9 cut(s)	31, 97, 219, 433, 770, 830, 950, 983, 1118
AluI	AGCT	9 cut(s)	31, 97, 219, 433, 770, 830, 950, 983, 1118
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	6 cut(s)	123, 452, 632, 641, 789, 1027
Alw44I	GTGCAC	1 cut(s)	707
AlwI	GGATC	2 cut(s)	991, 1004
AoxI	GGCC	3 cut(s)	139, 837, 940
ApaLI	GTGCAC	1 cut(s)	707
ApeKI	GCWGC	2 cut(s)	692, 862
ApoI	RAATTY	2 cut(s)	165, 450
Asp700I	GAANNNNTTC	1 cut(s)	285
AspA2I	CCTAGG	1 cut(s)	943
AspS9I	GGNCC	2 cut(s)	793, 838
AsuC2I	CCSGG	3 cut(s)	274, 654, 804
AsuHPI	GGTGA	7 cut(s)	224, 395, 683, 836, 901, 1142, 1157
AsuII	TTCGAA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	793
AvrII	CCTAGG	1 cut(s)	943
AxyI	CCTNAGG	1 cut(s)	820
BaeGI	GKGCMC	1 cut(s)	711
BamHI	GGATCC	1 cut(s)	996
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	2 cut(s)	679, 874
BccI	CCATC	7 cut(s)	118, 404, 593, 722, 829, 1054, 1100
BclI	TGATCA	2 cut(s)	361, 385
BcnI	CCSGG	3 cut(s)	274, 654, 804
BcoDI	GTCTC	6 cut(s)	123, 452, 632, 641, 789, 1027
BfaI	CTAG	3 cut(s)	767, 924, 944
BfrI	CTTAAG	1 cut(s)	428
BisI	GCNGC	3 cut(s)	553, 693, 863
BlnI	CCTAGG	1 cut(s)	943
BlsI	GCNGC	3 cut(s)	554, 694, 864
Bme1390I	CCNGG	3 cut(s)	274, 654, 804
Bme18I	GGWCC	1 cut(s)	793
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	793, 838
BmiI	GGNNCC	4 cut(s)	308, 514, 840, 998
BmrFI	CCNGG	3 cut(s)	274, 654, 804
BmsI	GCATC	3 cut(s)	241, 1012, 1094
BplI	GAGNNNNNCTC	2 cut(s)	741, 773
BpmI	CTGGAG	3 cut(s)	67, 531, 768
Bpu14I	TTCGAA	1 cut(s)	197
BpuMI	CCSGG	3 cut(s)	274, 654, 804
BsaAI	YACGTR	1 cut(s)	243
BsaBI	GATNNNNATC	2 cut(s)	390, 564
BsaHI	GRCGYC	2 cut(s)	270, 650
BsaI	GGTCTC	2 cut(s)	123, 452
BsaJI	CCNNGG	1 cut(s)	943
BsaWI	WCCGGW	2 cut(s)	209, 446
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 316, 629, 802
Bse1I	ACTGG	1 cut(s)	1147
Bse21I	CCTNAGG	1 cut(s)	820
Bse3DI	GCAATG	1 cut(s)	104
Bse8I	GATNNNNATC	2 cut(s)	390, 564
BseDI	CCNNGG	1 cut(s)	943
BseGI	GGATG	4 cut(s)	256, 364, 1065, 1085
BseJI	GATNNNNATC	2 cut(s)	390, 564
BseLI	CCNNNNNNNGG	4 cut(s)	148, 316, 629, 802
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	2 cut(s)	185, 302
BseNI	ACTGG	1 cut(s)	1147
BseSI	GKGCMC	1 cut(s)	711
BseXI	GCAGC	2 cut(s)	679, 874
BseYI	CCCAGC	2 cut(s)	93, 979
BshFI	GGCC	3 cut(s)	141, 839, 942
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	6 cut(s)	138, 210, 273, 447, 653, 803
BslFI	GGGAC	1 cut(s)	962
BslI	CCNNNNNNNGG	4 cut(s)	148, 316, 629, 802
BsmAI	GTCTC	6 cut(s)	123, 452, 632, 641, 789, 1027
BsmBI	CGTCTC	2 cut(s)	641, 1027
BsmFI	GGGAC	1 cut(s)	962
BsnI	GGCC	3 cut(s)	141, 839, 942
Bso31I	GGTCTC	2 cut(s)	123, 452
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp143I	GATC	4 cut(s)	361, 385, 565, 996
BspACI	CCGC	3 cut(s)	9, 254, 553
BspANI	GGCC	3 cut(s)	141, 839, 942
BspCNI	CTCAG	2 cut(s)	184, 303
BspLI	GGNNCC	4 cut(s)	308, 514, 840, 998
BspPI	GGATC	2 cut(s)	991, 1004
BspT104I	TTCGAA	1 cut(s)	197
BspTI	CTTAAG	1 cut(s)	428
BspTNI	GGTCTC	2 cut(s)	123, 452
BsrDI	GCAATG	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	1147
BssECI	CCNNGG	1 cut(s)	943
BssMI	GATC	4 cut(s)	361, 385, 565, 996
BssNI	GRCGYC	2 cut(s)	270, 650
BssT1I	CCWWGG	1 cut(s)	943
Bst4CI	ACNGT	1 cut(s)	620
Bst6I	CTCTTC	2 cut(s)	55, 1006
BstACI	GRCGYC	2 cut(s)	270, 650
BstAFI	CTTAAG	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	33, 435
BstDEI	CTNAG	3 cut(s)	171, 311, 820
BstF5I	GGATG	4 cut(s)	256, 364, 1065, 1085
BstKTI	GATC	4 cut(s)	364, 388, 568, 999
BstMAI	GTCTC	6 cut(s)	123, 452, 632, 641, 789, 1027
BstMBI	GATC	4 cut(s)	361, 385, 565, 996
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 32, 836
BstSCI	CCNGG	3 cut(s)	272, 652, 802
BstSLI	GKGCMC	1 cut(s)	711
BstSNI	TACGTA	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	679, 874
BstX2I	RGATCY	1 cut(s)	996
BstXI	CCANNNNNNTGG	1 cut(s)	1007
BstYI	RGATCY	1 cut(s)	996
Bsu36I	CCTNAGG	1 cut(s)	820
BsuRI	GGCC	3 cut(s)	141, 839, 942
BtsCI	GGATG	4 cut(s)	256, 364, 1065, 1085
BtsIMutI	CAGTG	2 cut(s)	726, 845
Cac8I	GCNNGC	2 cut(s)	33, 435
Cfr13I	GGNCC	2 cut(s)	793, 838
CseI	GACGC	2 cut(s)	278, 658
Csp6I	GTAC	2 cut(s)	405, 546
CviAII	CATG	1 cut(s)	969
CviQI	GTAC	2 cut(s)	405, 546
DdeI	CTNAG	3 cut(s)	171, 311, 820
DpnI	GATC	4 cut(s)	363, 387, 567, 998
DpnII	GATC	4 cut(s)	361, 385, 565, 996
DriI	GACNNNNNGTC	1 cut(s)	274
Eam1104I	CTCTTC	2 cut(s)	55, 1006
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EarI	CTCTTC	2 cut(s)	55, 1006
Eco105I	TACGTA	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	943
Eco147I	AGGCCT	1 cut(s)	942
Eco31I	GGTCTC	2 cut(s)	123, 452
Eco47I	GGWCC	1 cut(s)	793
Eco57I	CTGAAG	1 cut(s)	809
Eco81I	CCTNAGG	1 cut(s)	820
EcoT14I	CCWWGG	1 cut(s)	943
ErhI	CCWWGG	1 cut(s)	943
Esp3I	CGTCTC	2 cut(s)	641, 1027
FaeI	CATG	1 cut(s)	972
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FaqI	GGGAC	1 cut(s)	962
FatI	CATG	1 cut(s)	968
FauI	CCCGC	1 cut(s)	247
FauNDI	CATATG	1 cut(s)	853
FbaI	TGATCA	2 cut(s)	361, 385
Fnu4HI	GCNGC	3 cut(s)	553, 693, 863
FokI	GGATG	4 cut(s)	263, 371, 1072, 1072
Fsp4HI	GCNGC	3 cut(s)	553, 693, 863
FspBI	CTAG	3 cut(s)	767, 924, 944
GluI	GCNGC	3 cut(s)	553, 693, 863
GsaI	CCCAGC	2 cut(s)	97, 983
GsuI	CTGGAG	3 cut(s)	67, 531, 768
HaeIII	GGCC	3 cut(s)	141, 839, 942
HapII	CCGG	6 cut(s)	138, 210, 273, 447, 653, 803
HgaI	GACGC	2 cut(s)	278, 658
Hin1I	GRCGYC	2 cut(s)	270, 650
Hin1II	CATG	1 cut(s)	972
HindIII	AAGCTT	2 cut(s)	431, 828
HinfI	GANTC	3 cut(s)	206, 716, 965
HpaII	CCGG	6 cut(s)	138, 210, 273, 447, 653, 803
HphI	GGTGA	7 cut(s)	224, 395, 683, 836, 901, 1142, 1157
Hpy166II	GTNNAC	3 cut(s)	6, 378, 709
Hpy188I	TCNGA	4 cut(s)	174, 280, 616, 789
Hpy188III	TCNNGA	4 cut(s)	57, 310, 510, 1057
Hpy8I	GTNNAC	3 cut(s)	6, 378, 709
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	3 cut(s)	784, 872, 1142
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	4 cut(s)	437, 665, 709, 1125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 32, 836
HpyF3I	CTNAG	3 cut(s)	171, 311, 820
HpySE526I	ACGT	1 cut(s)	242
Hsp92I	GRCGYC	2 cut(s)	270, 650
Hsp92II	CATG	1 cut(s)	972
Ksp22I	TGATCA	2 cut(s)	361, 385
Kzo9I	GATC	4 cut(s)	361, 385, 565, 996
LmnI	GCTCC	4 cut(s)	312, 512, 947, 1115
Lsp1109I	GCAGC	2 cut(s)	679, 874
LweI	GCATC	3 cut(s)	241, 1012, 1094
MaeI	CTAG	3 cut(s)	767, 924, 944
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	4 cut(s)	224, 502, 814, 1138
MalI	GATC	4 cut(s)	363, 387, 567, 998
MboI	GATC	4 cut(s)	361, 385, 565, 996
MboII	GAAGA	6 cut(s)	42, 45, 211, 1023, 1031, 1115
MflI	RGATCY	1 cut(s)	996
MhlI	GDGCHC	1 cut(s)	711
MluCI	AATT	5 cut(s)	165, 294, 450, 591, 702
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	4 cut(s)	261, 429, 858, 1044
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	983
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	6 cut(s)	138, 210, 273, 447, 653, 803
MspR9I	CCNGG	3 cut(s)	274, 654, 804
MwoI	GCNNNNNNNGC	3 cut(s)	17, 32, 836
NciI	CCSGG	3 cut(s)	274, 654, 804
NdeI	CATATG	1 cut(s)	853
NdeII	GATC	4 cut(s)	361, 385, 565, 996
NlaIII	CATG	1 cut(s)	972
NlaIV	GGNNCC	4 cut(s)	308, 514, 840, 998
NmeAIII	GCCGAG	1 cut(s)	670
NmuCI	GTSAC	2 cut(s)	224, 502
NspV	TTCGAA	1 cut(s)	197
OliI	CACNNNNGTG	1 cut(s)	231
PceI	AGGCCT	1 cut(s)	942
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	716, 965
PkrI	GCNGC	3 cut(s)	554, 694, 864
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Ppu21I	YACGTR	1 cut(s)	243
PspFI	CCCAGC	2 cut(s)	93, 979
PspN4I	GGNNCC	4 cut(s)	308, 514, 840, 998
PspPI	GGNCC	2 cut(s)	793, 838
PsuI	RGATCY	1 cut(s)	996
PvuII	CAGCTG	1 cut(s)	983
RsaI	GTAC	2 cut(s)	406, 547
RsaNI	GTAC	2 cut(s)	405, 546
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	4 cut(s)	261, 429, 858, 1044
SatI	GCNGC	3 cut(s)	553, 693, 863
Sau3AI	GATC	4 cut(s)	361, 385, 565, 996
Sau96I	GGNCC	2 cut(s)	793, 838
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	274, 654, 804
SduI	GDGCHC	1 cut(s)	711
SfaNI	GCATC	3 cut(s)	241, 1012, 1094
SfuI	TTCGAA	1 cut(s)	197
SinI	GGWCC	1 cut(s)	793
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SnaBI	TACGTA	1 cut(s)	243
Sse9I	AATT	5 cut(s)	165, 294, 450, 591, 702
SseBI	AGGCCT	1 cut(s)	942
SsiI	CCGC	3 cut(s)	9, 254, 553
SspMI	CTAG	3 cut(s)	767, 924, 944
StuI	AGGCCT	1 cut(s)	942
StyD4I	CCNGG	3 cut(s)	272, 652, 802
StyI	CCWWGG	1 cut(s)	943
TaaI	ACNGT	1 cut(s)	620
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	3 cut(s)	197, 289, 597
TasI	AATT	5 cut(s)	165, 294, 450, 591, 702
TatI	WGTACW	1 cut(s)	545
TauI	GCSGC	1 cut(s)	555
TfiI	GAWTC	2 cut(s)	716, 965
Tru1I	TTAA	4 cut(s)	261, 429, 858, 1044
Tru9I	TTAA	4 cut(s)	261, 429, 858, 1044
TscAI	CASTG	2 cut(s)	726, 852
TseFI	GTSAC	2 cut(s)	224, 502
TseI	GCWGC	2 cut(s)	692, 862
Tsp45I	GTSAC	2 cut(s)	224, 502
TspDTI	ATGAA	2 cut(s)	144, 957
TspRI	CASTG	2 cut(s)	726, 852
Vha464I	CTTAAG	1 cut(s)	428
VneI	GTGCAC	1 cut(s)	707
VpaK11BI	GGWCC	1 cut(s)	793
XapI	RAATTY	2 cut(s)	165, 450
XmaJI	CCTAGG	1 cut(s)	943
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	3 cut(s)	767, 924, 944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.