Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

16314192 .. 16315108

Gene Structure 917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032547

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCCGGGTTTCTATGCAGAGGGTGAGTATGACCTCAATGGTTTTGCAGTTGTAATTGTGAACAAGGAATCTGTGACTGATGATAAGAATATTATGGTTGGAGATGTCCTCATCAGCCTACCATCCAGTGGAGTTCATTCTAATGGTTTTTCTCTTGACCAATTACTAGGCATATCTATTACCTTAGGTGAAGCTCTGATGTCCCCCACAATGATATATGTTAAGCAGGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGATTTCACCGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATAATCATTCATGGGAAGTCCAAGCTGTTTTCAAATGGATCCAAGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGACGAACTTTTAATATGGGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGGCATCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

159

Amino Acids

17.1

Weight (kDa)

5.09

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	33 - 156	2.5e-25	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	217
Acc36I	ACCTGC	1 cut(s)	217
AccB7I	CCANNNNNTGG	1 cut(s)	128
AclWI	GGATC	2 cut(s)	373, 386
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	373
AluBI	AGCT	3 cut(s)	194, 332, 365
AluI	AGCT	3 cut(s)	194, 332, 365
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	2 cut(s)	373, 386
AoxI	GGCC	1 cut(s)	322
AspA2I	CCTAGG	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	4 cut(s)	35, 200, 283, 296
AvrII	CCTAGG	1 cut(s)	325
AxyI	CCTNAGG	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	378
BccI	CCATC	2 cut(s)	130, 436
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	3 cut(s)	167, 306, 326
BfuAI	ACCTGC	1 cut(s)	217
BlnI	CCTAGG	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	394
BplI	GAGNNNNNCTC	2 cut(s)	93, 125
BpuMI	CCSGG	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	126
Bse21I	CCTNAGG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	3 cut(s)	122, 447, 467
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	409
BsmBI	CGTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	378
BspANI	GGCC	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	380
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	2 cut(s)	373, 386
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	388
BstDEI	CTNAG	1 cut(s)	184
BstF5I	GGATG	3 cut(s)	122, 447, 467
BstKTI	GATC	1 cut(s)	381
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	4
BstX2I	RGATCY	1 cut(s)	378
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	378
Bsu36I	CCTNAGG	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	324
BtsCI	GGATG	3 cut(s)	122, 447, 467
BtsIMutI	CAGTG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	217
CviAII	CATG	1 cut(s)	351
CviJI	RGCY	7 cut(s)	117, 194, 269, 324, 332, 365, 389
CviKI_1	RGCY	7 cut(s)	117, 194, 269, 324, 332, 365, 389
DdeI	CTNAG	1 cut(s)	184
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	388
Eco130I	CCWWGG	1 cut(s)	325
Eco147I	AGGCCT	1 cut(s)	324
Eco81I	CCTNAGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	409
FaeI	CATG	1 cut(s)	354
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	1 cut(s)	350
FokI	GGATG	3 cut(s)	109, 454, 454
FspBI	CTAG	3 cut(s)	167, 306, 326
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	1 cut(s)	354
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	4 cut(s)	35, 200, 283, 296
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	253
HpyCH4V	TGCA	2 cut(s)	17, 47
HpyF3I	CTNAG	1 cut(s)	184
Hsp92II	CATG	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	5 cut(s)	18, 139, 212, 264, 375
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	3 cut(s)	167, 306, 326
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MboII	GAAGA	2 cut(s)	405, 413
MflI	RGATCY	1 cut(s)	378
MluCI	AATT	3 cut(s)	54, 161, 240
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	7 cut(s)	13, 44, 119, 245, 275, 379, 457
MseI	TTAA	2 cut(s)	222, 426
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	6
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	378
NlaIII	CATG	1 cut(s)	354
NlaIV	GGNNCC	1 cut(s)	380
NmuCI	GTSAC	1 cut(s)	73
PaqCI	CACCTGC	1 cut(s)	217
PceI	AGGCCT	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	378
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	222, 426
Sau3AI	GATC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	6
SfaNI	GCATC	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	3 cut(s)	54, 161, 240
SseBI	AGGCCT	1 cut(s)	324
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	3 cut(s)	167, 306, 326
StuI	AGGCCT	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	325
TasI	AATT	3 cut(s)	54, 161, 240
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	222, 426
Tru9I	TTAA	2 cut(s)	222, 426
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	125, 339
TspRI	CASTG	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	128
XmaJI	CCTAGG	1 cut(s)	325
XspI	CTAG	3 cut(s)	167, 306, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.