Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Forward (+)

32933115 .. 32936598

Gene Structure 3484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGTCCACCGCCCTCAAAGCAAACGCAGAGCTTGCTCTTGGCTTTGCCTCTTCTTCCAGACCCTCTTATTCGAAACCCAACTCCAGCCATACCCAGCTATCCACATTGCCATCGGGGTCTCTCCCCAACAACTTCTCCGGCCTCTCTATGGCTTCATCAAGTGGAATTTCTCAGAGCAAACGCGTATGCTCACTTTCGAAGAATGACTCCGGTGAAGGCTCTGGTCAAAATGGTGGTTTTACATATAAGGATGCTGGTGTTGATATAGACGCCGGGTCGGAACTTGTTCGACGAATTGCCAAGTTGGCTTCTGGGATTGGAGGCTTTGGAGGTCTTTTCCCTCTCGGTGATCATTTTCTTGTTGCTGGTACTGATGGTGTGGGAACTAAACTTAAGCTTGCATTTGATACCGGAATTTATGAGACCATTGGTATTGATTTGGTTGCTATGAGTGTCAATGATATTGTCACTTCTGGAGCCAAGCCATTATTTTTCCTTGATTGCTTTGCTACAAGCCGCCTTGATGTTGATCTTGCTGAAAAGGTTATCAAGGGAATTGTCGATGGTTGCCAACAATCAGACTGTCCTCTTTTAGGTGGAGAGACTGCCGAGATGTCGGGTTTCTATGCAGAGGGTGAGTTTGACCTTTGTGGTACTGCGGTTGGAATTGTGCACAAGGAATCAGTGATTGATGGTAAAAACATTGTGGCTGGAGATGTCCTCATTGGCCTACCATCCAGTGGGGTTCATTCCAATGGTTTTTCTCTTGTAAGAAGGGTTCTAGCTCATAGTGGGTTCTCTCTGAAGGACCAGCTACCGGGTAAATCTGTTACCTTAGGTGAAGCTTTGATGGCCCCCACAGTGATATATGTTAAGCAGCAAGGGAGGTGTGAAGGGGTAGCCCACATCACAGGAGGTGGTTTCACCAACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATAATGATTCATGGGAAGTCCCAGCTGTTTTCAAATGGATCCAAGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGACGAACTTTTAATATGGGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGGCATCCCATAGAATACTTGAAGATGGAAATGGAGCTTACTGCATTGGTGAGGTTGTAACTGGTGGAGGAGTGAGTTATAGACGAAATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

396

Amino Acids

41.32

Weight (kDa)

5.7

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS	PF00586	116 - 224	7.9e-24	AIR synthase related protein, N-terminal domain
AIRS_C	PF02769	237 - 390	5.8e-31	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	740
AccII	CGCG	1 cut(s)	183
AciI	CCGC	3 cut(s)	9, 517, 659
AclWI	GGATC	2 cut(s)	1006, 1019
AcsI	RAATTY	2 cut(s)	165, 414
AcuI	CTGAAG	1 cut(s)	824
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	2 cut(s)	370, 655
AfiI	CCNNNNNNNGG	4 cut(s)	148, 593, 740, 817
AflII	CTTAAG	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	1006, 1118
AhdI	GACNNNNNGTC	1 cut(s)	274
AluBI	AGCT	9 cut(s)	31, 97, 397, 785, 814, 845, 965, 998, 1133
AluI	AGCT	9 cut(s)	31, 97, 397, 785, 814, 845, 965, 998, 1133
Alw21I	GWGCWC	1 cut(s)	675
Alw26I	GTCTC	4 cut(s)	123, 416, 596, 1042
Alw44I	GTGCAC	1 cut(s)	671
AlwI	GGATC	2 cut(s)	1006, 1019
AoxI	GGCC	4 cut(s)	139, 727, 852, 955
ApaLI	GTGCAC	1 cut(s)	671
ApeKI	GCWGC	1 cut(s)	877
ApoI	RAATTY	2 cut(s)	165, 414
Asp700I	GAANNNNTTC	1 cut(s)	285
AspA2I	CCTAGG	1 cut(s)	958
AspS9I	GGNCC	2 cut(s)	808, 853
AsuC2I	CCSGG	2 cut(s)	274, 819
AsuHPI	GGTGA	6 cut(s)	224, 359, 647, 851, 916, 1157
AsuII	TTCGAA	2 cut(s)	71, 197
AvaII	GGWCC	1 cut(s)	808
AvrII	CCTAGG	1 cut(s)	958
AxyI	CCTNAGG	1 cut(s)	835
BaeGI	GKGCMC	1 cut(s)	675
BaeI	ACNNNNGTAYC	2 cut(s)	645, 678
BamHI	GGATCC	1 cut(s)	1011
Bbv12I	GWGCWC	1 cut(s)	675
BbvI	GCAGC	1 cut(s)	889
BccI	CCATC	8 cut(s)	118, 368, 557, 686, 742, 844, 1069, 1115
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	2 cut(s)	274, 819
BcoDI	GTCTC	4 cut(s)	123, 416, 596, 1042
BfaI	CTAG	3 cut(s)	782, 939, 959
BfrI	CTTAAG	1 cut(s)	392
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	2 cut(s)	517, 878
BlnI	CCTAGG	1 cut(s)	958
BlsI	GCNGC	2 cut(s)	518, 879
Bme1390I	CCNGG	2 cut(s)	274, 819
Bme18I	GGWCC	1 cut(s)	808
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	808, 853
BmiI	GGNNCC	3 cut(s)	478, 855, 1013
BmrFI	CCNGG	2 cut(s)	274, 819
BmsI	GCATC	3 cut(s)	241, 1027, 1109
BplI	GAGNNNNNCTC	2 cut(s)	705, 737
BpmI	CTGGAG	3 cut(s)	67, 495, 732
Bpu14I	TTCGAA	2 cut(s)	71, 197
BpuMI	CCSGG	2 cut(s)	274, 819
BsaBI	GATNNNNATC	1 cut(s)	528
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	2 cut(s)	123, 416
BsaJI	CCNNGG	1 cut(s)	958
BsaWI	WCCGGW	2 cut(s)	209, 410
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 593, 740, 817
Bse1I	ACTGG	2 cut(s)	738, 1162
Bse21I	CCTNAGG	1 cut(s)	835
Bse3DI	GCAATG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	958
BseGI	GGATG	4 cut(s)	256, 734, 1080, 1100
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	4 cut(s)	148, 593, 740, 817
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	738, 1162
BseRI	GAGGAG	1 cut(s)	1179
BseSI	GKGCMC	1 cut(s)	675
BseXI	GCAGC	1 cut(s)	889
BseYI	CCCAGC	2 cut(s)	93, 994
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	4 cut(s)	141, 729, 854, 957
BsiHKAI	GWGCWC	1 cut(s)	675
BsiSI	CCGG	5 cut(s)	138, 210, 273, 411, 818
BslFI	GGGAC	1 cut(s)	977
BslI	CCNNNNNNNGG	4 cut(s)	148, 593, 740, 817
BsmAI	GTCTC	4 cut(s)	123, 416, 596, 1042
BsmBI	CGTCTC	1 cut(s)	1042
BsmFI	GGGAC	1 cut(s)	977
BsnI	GGCC	4 cut(s)	141, 729, 854, 957
Bso31I	GGTCTC	2 cut(s)	123, 416
Bsp119I	TTCGAA	2 cut(s)	71, 197
Bsp1286I	GDGCHC	1 cut(s)	675
Bsp143I	GATC	3 cut(s)	349, 529, 1011
BspACI	CCGC	3 cut(s)	9, 517, 659
BspANI	GGCC	4 cut(s)	141, 729, 854, 957
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	3 cut(s)	478, 855, 1013
BspPI	GGATC	2 cut(s)	1006, 1019
BspT104I	TTCGAA	2 cut(s)	71, 197
BspTI	CTTAAG	1 cut(s)	392
BspTNI	GGTCTC	2 cut(s)	123, 416
BsrDI	GCAATG	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	738, 1162
BssECI	CCNNGG	1 cut(s)	958
BssMI	GATC	3 cut(s)	349, 529, 1011
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	958
Bst4CI	ACNGT	2 cut(s)	584, 862
Bst6I	CTCTTC	2 cut(s)	55, 1021
BstACI	GRCGYC	1 cut(s)	270
BstAFI	CTTAAG	1 cut(s)	392
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstBI	TTCGAA	2 cut(s)	71, 197
BstC8I	GCNNGC	2 cut(s)	33, 399
BstDEI	CTNAG	2 cut(s)	171, 835
BstENI	CCTNNNNNAGG	1 cut(s)	591
BstF5I	GGATG	4 cut(s)	256, 734, 1080, 1100
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	3 cut(s)	352, 532, 1014
BstMAI	GTCTC	4 cut(s)	123, 416, 596, 1042
BstMBI	GATC	3 cut(s)	349, 529, 1011
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 32, 305, 851
BstSCI	CCNGG	2 cut(s)	272, 817
BstSLI	GKGCMC	1 cut(s)	675
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	889
BstX2I	RGATCY	1 cut(s)	1011
BstXI	CCANNNNNNTGG	1 cut(s)	1022
BstYI	RGATCY	1 cut(s)	1011
Bsu36I	CCTNAGG	1 cut(s)	835
BsuRI	GGCC	4 cut(s)	141, 729, 854, 957
BtsCI	GGATG	4 cut(s)	256, 734, 1080, 1100
BtsIMutI	CAGTG	3 cut(s)	690, 745, 867
Cac8I	GCNNGC	2 cut(s)	33, 399
Cfr13I	GGNCC	2 cut(s)	808, 853
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	369, 654
CviAII	CATG	1 cut(s)	984
CviQI	GTAC	2 cut(s)	369, 654
DdeI	CTNAG	2 cut(s)	171, 835
DpnI	GATC	3 cut(s)	351, 531, 1013
DpnII	GATC	3 cut(s)	349, 529, 1011
DriI	GACNNNNNGTC	1 cut(s)	274
Eam1104I	CTCTTC	2 cut(s)	55, 1021
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EarI	CTCTTC	2 cut(s)	55, 1021
Eco130I	CCWWGG	1 cut(s)	958
Eco147I	AGGCCT	1 cut(s)	957
Eco31I	GGTCTC	2 cut(s)	123, 416
Eco47I	GGWCC	1 cut(s)	808
Eco57I	CTGAAG	1 cut(s)	824
Eco81I	CCTNAGG	1 cut(s)	835
EcoNI	CCTNNNNNAGG	1 cut(s)	591
EcoT14I	CCWWGG	1 cut(s)	958
ErhI	CCWWGG	1 cut(s)	958
Esp3I	CGTCTC	1 cut(s)	1042
FaeI	CATG	1 cut(s)	987
FaqI	GGGAC	1 cut(s)	977
FatI	CATG	1 cut(s)	983
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	517, 878
FokI	GGATG	4 cut(s)	263, 721, 1087, 1087
Fsp4HI	GCNGC	2 cut(s)	517, 878
FspBI	CTAG	3 cut(s)	782, 939, 959
GluI	GCNGC	2 cut(s)	517, 878
GsaI	CCCAGC	2 cut(s)	97, 998
GsuI	CTGGAG	3 cut(s)	67, 495, 732
HaeIII	GGCC	4 cut(s)	141, 729, 854, 957
HapII	CCGG	5 cut(s)	138, 210, 273, 411, 818
HgaI	GACGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	987
HindIII	AAGCTT	2 cut(s)	395, 843
HinfI	GANTC	3 cut(s)	206, 680, 980
HpaII	CCGG	5 cut(s)	138, 210, 273, 411, 818
HphI	GGTGA	6 cut(s)	224, 359, 647, 851, 916, 1157
Hpy166II	GTNNAC	2 cut(s)	6, 673
Hpy188I	TCNGA	4 cut(s)	174, 280, 580, 804
Hpy188III	TCNNGA	2 cut(s)	57, 474
Hpy8I	GTNNAC	2 cut(s)	6, 673
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	4 cut(s)	209, 768, 799, 887
HpyCH4III	ACNGT	2 cut(s)	584, 862
HpyCH4V	TGCA	4 cut(s)	401, 629, 673, 1140
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 32, 305, 851
HpyF3I	CTNAG	2 cut(s)	171, 835
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	987
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	349, 529, 1011
LmnI	GCTCC	3 cut(s)	476, 962, 1130
Lsp1109I	GCAGC	1 cut(s)	889
LweI	GCATC	3 cut(s)	241, 1027, 1109
MaeI	CTAG	3 cut(s)	782, 939, 959
MaeIII	GTNAC	3 cut(s)	466, 829, 1153
MalI	GATC	3 cut(s)	351, 531, 1013
MboI	GATC	3 cut(s)	349, 529, 1011
MboII	GAAGA	6 cut(s)	42, 45, 211, 1038, 1046, 1130
MflI	RGATCY	1 cut(s)	1011
MhlI	GDGCHC	1 cut(s)	675
MluCI	AATT	5 cut(s)	165, 294, 414, 555, 666
MluI	ACGCGT	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	2 cut(s)	258, 643
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	3 cut(s)	393, 873, 1059
MslI	CAYNNNNRTG	1 cut(s)	753
MspA1I	CMGCKG	1 cut(s)	998
MspCI	CTTAAG	1 cut(s)	392
MspI	CCGG	5 cut(s)	138, 210, 273, 411, 818
MspR9I	CCNGG	2 cut(s)	274, 819
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	4 cut(s)	17, 32, 305, 851
NciI	CCSGG	2 cut(s)	274, 819
NdeII	GATC	3 cut(s)	349, 529, 1011
NlaIII	CATG	1 cut(s)	987
NlaIV	GGNNCC	3 cut(s)	478, 855, 1013
NmeAIII	GCCGAG	1 cut(s)	634
NmuCI	GTSAC	1 cut(s)	466
NspV	TTCGAA	2 cut(s)	71, 197
PceI	AGGCCT	1 cut(s)	957
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	680, 980
PflMI	CCANNNNNTGG	1 cut(s)	740
PkrI	GCNGC	2 cut(s)	518, 879
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PspFI	CCCAGC	2 cut(s)	93, 994
PspN4I	GGNNCC	3 cut(s)	478, 855, 1013
PspPI	GGNCC	2 cut(s)	808, 853
PsrI	GAACNNNNNNTAC	2 cut(s)	762, 794
PsuI	RGATCY	1 cut(s)	1011
PvuII	CAGCTG	1 cut(s)	998
RsaI	GTAC	2 cut(s)	370, 655
RsaNI	GTAC	2 cut(s)	369, 654
RseI	CAYNNNNRTG	1 cut(s)	753
SaqAI	TTAA	3 cut(s)	393, 873, 1059
SatI	GCNGC	2 cut(s)	517, 878
Sau3AI	GATC	3 cut(s)	349, 529, 1011
Sau96I	GGNCC	2 cut(s)	808, 853
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	274, 819
SduI	GDGCHC	1 cut(s)	675
SfaNI	GCATC	3 cut(s)	241, 1027, 1109
SfuI	TTCGAA	2 cut(s)	71, 197
SinI	GGWCC	1 cut(s)	808
SmiMI	CAYNNNNRTG	1 cut(s)	753
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	5 cut(s)	165, 294, 414, 555, 666
SseBI	AGGCCT	1 cut(s)	957
SsiI	CCGC	3 cut(s)	9, 517, 659
SspMI	CTAG	3 cut(s)	782, 939, 959
StuI	AGGCCT	1 cut(s)	957
StyD4I	CCNGG	2 cut(s)	272, 817
StyI	CCWWGG	1 cut(s)	958
TaaI	ACNGT	2 cut(s)	584, 862
TaqI	TCGA	4 cut(s)	71, 197, 289, 561
TasI	AATT	5 cut(s)	165, 294, 414, 555, 666
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	2 cut(s)	680, 980
Tru1I	TTAA	3 cut(s)	393, 873, 1059
Tru9I	TTAA	3 cut(s)	393, 873, 1059
TscAI	CASTG	3 cut(s)	690, 745, 867
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	1 cut(s)	877
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	3 cut(s)	144, 737, 972
TspRI	CASTG	3 cut(s)	690, 745, 867
Van91I	CCANNNNNTGG	1 cut(s)	740
Vha464I	CTTAAG	1 cut(s)	392
VneI	GTGCAC	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	808
XagI	CCTNNNNNAGG	1 cut(s)	591
XapI	RAATTY	2 cut(s)	165, 414
XmaJI	CCTAGG	1 cut(s)	958
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	3 cut(s)	782, 939, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.