Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001992.1

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Forward (+)

110128 .. 112148

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001992.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgggttattcgatctgggaaatagcgaaggccatcatcgacgaccactccgagctcaccgctgacctctacacccaggccatcgtcaccggcggcggcgactccggatccgaattgaaagattgggtatggtggcctggccaccagtgcggcgttcctttcaaagatgtggtctgctttgttagaactggtggtggccttagtgttggctgtgttaatcgaggcgatggattgtgggtaggttgtcaacgcagcatcatcgatcgtggacttgcaggagcaatggtggagggcggcgacttccgaatgatggtgttcaaatccaatgttatcaagggaattatggatggttgccaacaatctgactgtgctcttttagagggtgagtatgacctcaatggttttgcggttggaattgtgaagaaggaatcagtgattgatgggaaaaatattttggctggagatgtcctcattggcctaccatctagtggggttcattccaatggttttctcttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

172

Amino Acids

18.26

Weight (kDa)

4.7

Isoelectric Point (pI)

19.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccIII	TCCGGA	1 cut(s)	104
AciI	CCGC	6 cut(s)	60, 93, 96, 150, 294, 407
AclWI	GGATC	2 cut(s)	102, 115
AcoI	YGGCCR	1 cut(s)	139
AfiI	CCNNNNNNNGG	2 cut(s)	310, 488
AgsI	TTSAA	3 cut(s)	118, 163, 319
AjnI	CCWGG	2 cut(s)	75, 136
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw21I	GWGCWC	2 cut(s)	57, 373
AlwI	GGATC	2 cut(s)	102, 115
Aor13HI	TCCGGA	1 cut(s)	104
AoxI	GGCC	6 cut(s)	30, 78, 134, 139, 196, 475
ApeKI	GCWGC	1 cut(s)	252
ArsI	GACNNNNNNTTYG	2 cut(s)	156, 188
AsuHPI	GGTGA	3 cut(s)	49, 79, 395
BalI	TGGCCA	1 cut(s)	141
BamHI	GGATCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	2 cut(s)	57, 373
BbvI	GCAGC	1 cut(s)	264
BccI	CCATC	7 cut(s)	41, 89, 221, 304, 341, 434, 490
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	2 cut(s)	77, 138
BfaI	CTAG	1 cut(s)	486
BisI	GCNGC	5 cut(s)	94, 97, 151, 253, 295
BlsI	GCNGC	5 cut(s)	95, 98, 152, 254, 296
Bme1390I	CCNGG	2 cut(s)	77, 138
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	2 cut(s)	77, 138
BmsI	GCATC	1 cut(s)	264
BplI	GAGNNNNNCTC	2 cut(s)	453, 485
BpmI	CTGGAG	1 cut(s)	480
Bsa29I	ATCGAT	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	104
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 270, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 488
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	145, 193
Bse3DI	GCAATG	1 cut(s)	288
BseAI	TCCGGA	1 cut(s)	104
BseBI	CCWGG	2 cut(s)	77, 138
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	2 cut(s)	310, 488
BseMI	GCAATG	1 cut(s)	288
BseNI	ACTGG	2 cut(s)	145, 193
BseXI	GCAGC	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	265
BshFI	GGCC	6 cut(s)	32, 80, 136, 141, 198, 477
BshVI	ATCGAT	1 cut(s)	261
BsiEI	CGRYCG	1 cut(s)	265
BsiHKAI	GWGCWC	2 cut(s)	57, 373
BsiSI	CCGG	2 cut(s)	90, 105
BslI	CCNNNNNNNGG	2 cut(s)	310, 488
BsnI	GGCC	6 cut(s)	32, 80, 136, 141, 198, 477
Bsp1286I	GDGCHC	2 cut(s)	57, 373
Bsp13I	TCCGGA	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	12, 107, 262
BspACI	CCGC	6 cut(s)	60, 93, 96, 150, 294, 407
BspANI	GGCC	6 cut(s)	32, 80, 136, 141, 198, 477
BspDI	ATCGAT	1 cut(s)	261
BspEI	TCCGGA	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	2 cut(s)	102, 115
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	145, 193
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	3 cut(s)	12, 107, 262
Bst2UI	CCWGG	2 cut(s)	77, 138
Bst4CI	ACNGT	1 cut(s)	368
BstDEI	CTNAG	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	352
BstKTI	GATC	3 cut(s)	15, 110, 265
BstMBI	GATC	3 cut(s)	12, 107, 262
BstMCI	CGRYCG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstNI	CCWGG	2 cut(s)	77, 138
BstSCI	CCNGG	2 cut(s)	75, 136
BstV1I	GCAGC	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	261
BsuRI	GGCC	6 cut(s)	32, 80, 136, 141, 198, 477
BsuTUI	ATCGAT	1 cut(s)	261
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	152, 438
Cfr10I	RCCGGY	1 cut(s)	89
ClaI	ATCGAT	1 cut(s)	261
CviJI	RGCY	9 cut(s)	32, 55, 80, 136, 141, 198, 210, 458, 477
CviKI_1	RGCY	9 cut(s)	32, 55, 80, 136, 141, 198, 210, 458, 477
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	3 cut(s)	14, 109, 264
DpnII	GATC	3 cut(s)	12, 107, 262
EaeI	YGGCCR	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	75, 136
EcoT38I	GRGCYC	1 cut(s)	57
FaiI	YATR	3 cut(s)	130, 344, 390
Fnu4HI	GCNGC	5 cut(s)	94, 97, 151, 253, 295
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	5 cut(s)	94, 97, 151, 253, 295
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	5 cut(s)	94, 97, 151, 253, 295
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	6 cut(s)	32, 80, 136, 141, 198, 477
HapII	CCGG	2 cut(s)	90, 105
HincII	GTYRAC	1 cut(s)	248
HindII	GTYRAC	1 cut(s)	248
HinfI	GANTC	2 cut(s)	101, 428
HpaII	CCGG	2 cut(s)	90, 105
HphI	GGTGA	3 cut(s)	49, 79, 395
Hpy166II	GTNNAC	2 cut(s)	248, 269
Hpy188I	TCNGA	4 cut(s)	52, 112, 305, 364
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	2 cut(s)	248, 269
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	22, 418
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	1 cut(s)	200
Kpn2I	TCCGGA	1 cut(s)	104
Kzo9I	GATC	3 cut(s)	12, 107, 262
LmnI	GCTCC	1 cut(s)	278
Lsp1109I	GCAGC	1 cut(s)	264
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	1 cut(s)	486
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	3 cut(s)	14, 109, 264
MboI	GATC	3 cut(s)	12, 107, 262
MboII	GAAGA	1 cut(s)	433
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	2 cut(s)	57, 373
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	3 cut(s)	113, 339, 414
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	6 cut(s)	77, 215, 283, 373, 404, 479
Mox20I	TGGCCA	1 cut(s)	141
MroI	TCCGGA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	2 cut(s)	90, 105
MspR9I	CCNGG	2 cut(s)	77, 138
MvaI	CCWGG	2 cut(s)	77, 138
MwoI	GCNNNNNNNGC	1 cut(s)	147
NdeII	GATC	3 cut(s)	12, 107, 262
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	428
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	5 cut(s)	95, 98, 152, 254, 296
Ple19I	CGATCG	1 cut(s)	265
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	2 cut(s)	75, 136
PspGI	CCWGG	2 cut(s)	75, 136
PspN4I	GGNNCC	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	107
PvuI	CGATCG	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	501
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	5 cut(s)	94, 97, 151, 253, 295
Sau3AI	GATC	3 cut(s)	12, 107, 262
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	77, 138
SduI	GDGCHC	2 cut(s)	57, 373
SetI	ASST	4 cut(s)	57, 69, 244, 396
SfaNI	GCATC	1 cut(s)	264
SgrAI	CRCCGGYG	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	3 cut(s)	113, 339, 414
SsiI	CCGC	6 cut(s)	60, 93, 96, 150, 294, 407
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	1 cut(s)	486
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	75, 136
TaaI	ACNGT	1 cut(s)	368
TaqI	TCGA	4 cut(s)	11, 39, 220, 261
TasI	AATT	3 cut(s)	113, 339, 414
TauI	GCSGC	4 cut(s)	96, 99, 153, 297
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	2 cut(s)	152, 438
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	252
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	485
TspRI	CASTG	2 cut(s)	152, 438
Van91I	CCANNNNNTGG	1 cut(s)	488
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.