Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001617.1

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

183307 .. 187101

Gene Structure 3795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001617.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

atggttttttcgccggtgcttccccagcggcggtttggaggtcgtgactggattgcgaggcggaagatgcgaccgggttgggttggagaactagctggtggtcgaggcatggtaggtccttcatctctctcaattttcttcagacttcaacctctcaatccctcctataaccccccaagctgttcactagccatgtccaccggcctcaaagcaaacacagagcttgctcttggctttgcctcttcttcaagaccctcttattggaaacccaactccacccatacccagctatccagtttgccgtcggggtctctctccaacaacttctccggcctctctatggcttcgtcaagtggagtttcccagagcaaacgcgtattctcactttcgaagaatgattccggtgaaagctctgatcaaaatgatggtctgacgtataagggtgctggtgttgatatagatgccggatcggaacttgttcgacgaattgccaagatggctcctgggattggaggctttggaggtcttttccctctcggtgattcatatctcgttgctgggactgatggtgtgggaactaaacttaagcttgcatttgatactggaattcatgagaccattggtattgatttggttgctatgagtgtcaatgatattgtcacttctggagcaaagccattatttttccttgattactttgctacaagctgccttgatgttgatctggctgaaaaggttatcaagggaattgtcaatggttgccaacaatctgactgtgctcttttaggtggagagactgccgagatgccgggtttctatgcagagggtgagtatgacctcagtggttttgcggttggaattgtgaagaaggaatcagtgattgatgggaaaaacattttggctggagatgtcctcattggcctaccatccagtggggttcattccaatggtttttctcttgtaagaagggttctagctcatagcgggttgtctctgaaggaccaactaccgagtagctctgttaccgtgggtgaagctttgatggcccccacagtgatatatgttaatcaggtgcttgacataattagcaagggaggtgtgaagggggtagcccacatcacaggaggtggtttcactgacaatatacctagagtatttccagaaggcctaggagcagtcatctataaagattcatgggaagtcccagctgttttcaaatggatccaagaggctggaagagtagaagatgctgaaatgagaagaacttttaatatgggtattgggatggttcttgttgtgagtaaggaggcatcccacagaatacttgaagatggaaatggagcttactgcattggtgaggttataactggtgaaggagtgagttatagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

463

Amino Acids

48.8

Weight (kDa)

5.94

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1364
AccB7I	CCANNNNNTGG	1 cut(s)	932
AccII	CGCG	1 cut(s)	375
AciI	CCGC	5 cut(s)	28, 31, 61, 851, 984
AclWI	GGATC	3 cut(s)	475, 1216, 1229
AcsI	RAATTY	1 cut(s)	606
AcuI	CTGAAG	2 cut(s)	124, 1016
AfiI	CCNNNNNNNGG	5 cut(s)	30, 261, 340, 509, 932
AflII	CTTAAG	1 cut(s)	584
AflIII	ACRYGT	1 cut(s)	373
AgsI	TTSAA	4 cut(s)	149, 249, 1216, 1328
AjnI	CCWGG	1 cut(s)	502
AjuI	GAANNNNNNNTTGG	2 cut(s)	881, 913
Alw21I	GWGCWC	1 cut(s)	781
Alw26I	GTCTC	4 cut(s)	315, 608, 788, 996
AlwI	GGATC	3 cut(s)	475, 1216, 1229
AoxI	GGCC	5 cut(s)	202, 331, 919, 1044, 1165
ApeKI	GCWGC	1 cut(s)	708
ApoI	RAATTY	1 cut(s)	606
ArsI	GACNNNNNNTTYG	2 cut(s)	412, 444
Asp700I	GAANNNNTTC	1 cut(s)	477
AspA2I	CCTAGG	1 cut(s)	1168
AspS9I	GGNCC	3 cut(s)	116, 1000, 1045
AsuC2I	CCSGG	2 cut(s)	75, 810
AsuHPI	GGTGA	6 cut(s)	416, 551, 839, 1043, 1367, 1382
AsuII	TTCGAA	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	116, 1000
AvrII	CCTAGG	1 cut(s)	1168
BamHI	GGATCC	1 cut(s)	1221
Bbv12I	GWGCWC	1 cut(s)	781
BbvI	GCAGC	1 cut(s)	695
BccI	CCATC	8 cut(s)	419, 490, 560, 878, 934, 1036, 1279, 1325
BceAI	ACGGC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	504
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	75, 810
BcoDI	GTCTC	4 cut(s)	315, 608, 788, 996
BfaI	CTAG	5 cut(s)	92, 188, 974, 1149, 1169
BfrI	CTTAAG	1 cut(s)	584
BglI	GCCNNNNNGGC	1 cut(s)	497
BisI	GCNGC	2 cut(s)	29, 709
BlnI	CCTAGG	1 cut(s)	1168
BlsI	GCNGC	2 cut(s)	30, 710
Bme1390I	CCNGG	3 cut(s)	75, 504, 810
Bme18I	GGWCC	2 cut(s)	116, 1000
BmgT120I	GGNCC	3 cut(s)	116, 1000, 1045
BmiI	GGNNCC	3 cut(s)	501, 1047, 1223
BmrFI	CCNGG	3 cut(s)	75, 504, 810
BmsI	GCATC	5 cut(s)	57, 451, 795, 1237, 1319
BplI	GAGNNNNNCTC	2 cut(s)	897, 929
BpmI	CTGGAG	2 cut(s)	687, 924
Bpu14I	TTCGAA	1 cut(s)	389
BpuMI	CCSGG	2 cut(s)	75, 810
BsaBI	GATNNNNATC	2 cut(s)	546, 720
BsaI	GGTCTC	2 cut(s)	315, 608
BsaJI	CCNNGG	3 cut(s)	503, 1026, 1168
BsaWI	WCCGGW	1 cut(s)	401
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 261, 340, 509, 932
Bse118I	RCCGGY	2 cut(s)	13, 200
Bse1I	ACTGG	5 cut(s)	53, 294, 607, 930, 1372
Bse8I	GATNNNNATC	2 cut(s)	546, 720
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	3 cut(s)	503, 1026, 1168
BseGI	GGATG	3 cut(s)	926, 1290, 1310
BseJI	GATNNNNATC	2 cut(s)	546, 720
BseLI	CCNNNNNNNGG	5 cut(s)	30, 261, 340, 509, 932
BseMII	CTCAG	1 cut(s)	853
BseNI	ACTGG	5 cut(s)	53, 294, 607, 930, 1372
BseXI	GCAGC	1 cut(s)	695
BseYI	CCCAGC	4 cut(s)	24, 285, 557, 1204
Bsh1236I	CGCG	1 cut(s)	375
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	5 cut(s)	204, 333, 921, 1046, 1167
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	781
BsiSI	CCGG	7 cut(s)	14, 74, 201, 330, 402, 465, 809
BslFI	GGGAC	2 cut(s)	574, 1187
BslI	CCNNNNNNNGG	5 cut(s)	30, 261, 340, 509, 932
BsmAI	GTCTC	4 cut(s)	315, 608, 788, 996
BsmFI	GGGAC	2 cut(s)	574, 1187
BsnI	GGCC	5 cut(s)	204, 333, 921, 1046, 1167
Bso31I	GGTCTC	2 cut(s)	315, 608
Bsp119I	TTCGAA	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	781
Bsp143I	GATC	4 cut(s)	415, 467, 721, 1221
BspACI	CCGC	5 cut(s)	28, 31, 61, 851, 984
BspANI	GGCC	5 cut(s)	204, 333, 921, 1046, 1167
BspCNI	CTCAG	1 cut(s)	852
BspFNI	CGCG	1 cut(s)	375
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	3 cut(s)	501, 1047, 1223
BspPI	GGATC	3 cut(s)	475, 1216, 1229
BspT104I	TTCGAA	1 cut(s)	389
BspTI	CTTAAG	1 cut(s)	584
BspTNI	GGTCTC	2 cut(s)	315, 608
BsrFI	RCCGGY	2 cut(s)	13, 200
BsrI	ACTGG	5 cut(s)	53, 294, 607, 930, 1372
BssAI	RCCGGY	2 cut(s)	13, 200
BssECI	CCNNGG	3 cut(s)	503, 1026, 1168
BssMI	GATC	4 cut(s)	415, 467, 721, 1221
BssT1I	CCWWGG	1 cut(s)	1168
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	776, 1027, 1054
Bst6I	CTCTTC	2 cut(s)	247, 1231
BstAFI	CTTAAG	1 cut(s)	584
BstBI	TTCGAA	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	225, 591
BstDEI	CTNAG	1 cut(s)	839
BstDSI	CCRYGG	1 cut(s)	1026
BstF5I	GGATG	3 cut(s)	926, 1290, 1310
BstFNI	CGCG	1 cut(s)	375
BstKTI	GATC	4 cut(s)	418, 470, 724, 1224
BstMAI	GTCTC	4 cut(s)	315, 608, 788, 996
BstMBI	GATC	4 cut(s)	415, 467, 721, 1221
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 67, 497, 1043
BstNI	CCWGG	1 cut(s)	504
BstSCI	CCNGG	3 cut(s)	73, 502, 808
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	695
BstX2I	RGATCY	1 cut(s)	1221
BstXI	CCANNNNNNTGG	1 cut(s)	1232
BstYI	RGATCY	1 cut(s)	1221
BsuRI	GGCC	5 cut(s)	204, 333, 921, 1046, 1167
BtgI	CCRYGG	1 cut(s)	1026
BtsCI	GGATG	3 cut(s)	926, 1290, 1310
BtsIMutI	CAGTG	5 cut(s)	847, 882, 937, 1059, 1134
Cac8I	GCNNGC	2 cut(s)	225, 591
CciI	TCATGA	1 cut(s)	610
Cfr10I	RCCGGY	2 cut(s)	13, 200
Cfr13I	GGNCC	3 cut(s)	116, 1000, 1045
CviAII	CATG	4 cut(s)	109, 193, 611, 1194
DdeI	CTNAG	1 cut(s)	839
DpnI	GATC	4 cut(s)	417, 469, 723, 1223
DpnII	GATC	4 cut(s)	415, 467, 721, 1221
Eam1104I	CTCTTC	2 cut(s)	247, 1231
EarI	CTCTTC	2 cut(s)	247, 1231
EciI	GGCGGA	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	1168
Eco147I	AGGCCT	1 cut(s)	1167
Eco31I	GGTCTC	2 cut(s)	315, 608
Eco47I	GGWCC	2 cut(s)	116, 1000
Eco57I	CTGAAG	2 cut(s)	124, 1016
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	1168
ErhI	CCWWGG	1 cut(s)	1168
FaeI	CATG	4 cut(s)	112, 196, 614, 1197
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	2 cut(s)	574, 1187
FatI	CATG	4 cut(s)	108, 192, 610, 1193
FauI	CCCGC	1 cut(s)	977
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	29, 709
FokI	GGATG	3 cut(s)	913, 1297, 1297
Fsp4HI	GCNGC	2 cut(s)	29, 709
FspBI	CTAG	5 cut(s)	92, 188, 974, 1149, 1169
GluI	GCNGC	2 cut(s)	29, 709
GsaI	CCCAGC	4 cut(s)	28, 289, 561, 1208
GsuI	CTGGAG	2 cut(s)	687, 924
HaeIII	GGCC	5 cut(s)	204, 333, 921, 1046, 1167
HapII	CCGG	7 cut(s)	14, 74, 201, 330, 402, 465, 809
Hin1II	CATG	4 cut(s)	112, 196, 614, 1197
HindIII	AAGCTT	2 cut(s)	587, 1035
HinfI	GANTC	4 cut(s)	398, 542, 872, 1190
HpaII	CCGG	7 cut(s)	14, 74, 201, 330, 402, 465, 809
HphI	GGTGA	6 cut(s)	416, 551, 839, 1043, 1367, 1382
Hpy166II	GTNNAC	2 cut(s)	185, 198
Hpy188I	TCNGA	6 cut(s)	143, 415, 432, 472, 772, 996
Hpy188III	TCNNGA	5 cut(s)	44, 249, 611, 666, 1160
Hpy8I	GTNNAC	2 cut(s)	185, 198
Hpy99I	CGWCG	2 cut(s)	307, 486
HpyAV	CCTTC	7 cut(s)	129, 862, 960, 991, 1096, 1157, 1367
HpyCH4III	ACNGT	3 cut(s)	776, 1027, 1054
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	3 cut(s)	593, 821, 1350
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 67, 497, 1043
HpyF3I	CTNAG	1 cut(s)	839
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	4 cut(s)	112, 196, 614, 1197
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	4 cut(s)	415, 467, 721, 1221
LmnI	GCTCC	4 cut(s)	505, 668, 1172, 1340
Lsp1109I	GCAGC	1 cut(s)	695
LweI	GCATC	5 cut(s)	57, 451, 795, 1237, 1319
MaeI	CTAG	5 cut(s)	92, 188, 974, 1149, 1169
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	3 cut(s)	44, 658, 1021
MalI	GATC	4 cut(s)	417, 469, 723, 1223
MboI	GATC	4 cut(s)	415, 467, 721, 1221
MflI	RGATCY	1 cut(s)	1221
MhlI	GDGCHC	1 cut(s)	781
MluCI	AATT	6 cut(s)	132, 486, 606, 747, 858, 1083
MluI	ACGCGT	1 cut(s)	373
MmeI	TCCRAC	3 cut(s)	64, 342, 835
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	3 cut(s)	585, 1065, 1269
MslI	CAYNNNNRTG	1 cut(s)	945
MspA1I	CMGCKG	2 cut(s)	28, 1208
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	7 cut(s)	14, 74, 201, 330, 402, 465, 809
MspR9I	CCNGG	3 cut(s)	75, 504, 810
MvaI	CCWGG	1 cut(s)	504
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	4 cut(s)	25, 67, 497, 1043
NciI	CCSGG	2 cut(s)	75, 810
NdeII	GATC	4 cut(s)	415, 467, 721, 1221
NlaIII	CATG	4 cut(s)	112, 196, 614, 1197
NlaIV	GGNNCC	3 cut(s)	501, 1047, 1223
NmeAIII	GCCGAG	1 cut(s)	826
NmuCI	GTSAC	2 cut(s)	44, 658
NspV	TTCGAA	1 cut(s)	389
PagI	TCATGA	1 cut(s)	610
PceI	AGGCCT	1 cut(s)	1167
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	4 cut(s)	398, 542, 872, 1190
PflMI	CCANNNNNTGG	1 cut(s)	932
PkrI	GCNGC	2 cut(s)	30, 710
PpuMI	RGGWCCY	1 cut(s)	116
PsiI	TTATAA	1 cut(s)	1364
Psp5II	RGGWCCY	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	502
PspFI	CCCAGC	4 cut(s)	24, 285, 557, 1204
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	3 cut(s)	501, 1047, 1223
PspPI	GGNCC	3 cut(s)	116, 1000, 1045
PspPPI	RGGWCCY	1 cut(s)	116
PsrI	GAACNNNNNNTAC	2 cut(s)	954, 986
PsuI	RGATCY	1 cut(s)	1221
PvuII	CAGCTG	1 cut(s)	1208
RseI	CAYNNNNRTG	1 cut(s)	945
SaqAI	TTAA	3 cut(s)	585, 1065, 1269
SatI	GCNGC	2 cut(s)	29, 709
Sau3AI	GATC	4 cut(s)	415, 467, 721, 1221
Sau96I	GGNCC	3 cut(s)	116, 1000, 1045
ScrFI	CCNGG	3 cut(s)	75, 504, 810
SduI	GDGCHC	1 cut(s)	781
SfaNI	GCATC	5 cut(s)	57, 451, 795, 1237, 1319
SfuI	TTCGAA	1 cut(s)	389
SgrAI	CRCCGGYG	1 cut(s)	13
SinI	GGWCC	2 cut(s)	116, 1000
SmiMI	CAYNNNNRTG	1 cut(s)	945
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	6 cut(s)	132, 486, 606, 747, 858, 1083
SseBI	AGGCCT	1 cut(s)	1167
SsiI	CCGC	5 cut(s)	28, 31, 61, 851, 984
SspMI	CTAG	5 cut(s)	92, 188, 974, 1149, 1169
StuI	AGGCCT	1 cut(s)	1167
StyD4I	CCNGG	3 cut(s)	73, 502, 808
StyI	CCWWGG	1 cut(s)	1168
TaaI	ACNGT	3 cut(s)	776, 1027, 1054
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	3 cut(s)	103, 389, 481
TasI	AATT	6 cut(s)	132, 486, 606, 747, 858, 1083
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	4 cut(s)	398, 542, 872, 1190
Tru1I	TTAA	3 cut(s)	585, 1065, 1269
Tru9I	TTAA	3 cut(s)	585, 1065, 1269
TscAI	CASTG	5 cut(s)	847, 882, 937, 1059, 1141
TseFI	GTSAC	2 cut(s)	44, 658
TseI	GCWGC	1 cut(s)	708
Tsp45I	GTSAC	2 cut(s)	44, 658
TspDTI	ATGAA	5 cut(s)	111, 534, 599, 929, 1182
TspRI	CASTG	5 cut(s)	847, 882, 937, 1059, 1141
Van91I	CCANNNNNTGG	1 cut(s)	932
Vha464I	CTTAAG	1 cut(s)	584
VpaK11BI	GGWCC	2 cut(s)	116, 1000
XapI	RAATTY	1 cut(s)	606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	32
XmaJI	CCTAGG	1 cut(s)	1168
XmnI	GAANNNNTTC	1 cut(s)	477
XspI	CTAG	5 cut(s)	92, 188, 974, 1149, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.