Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

63858548 .. 63862717

Gene Structure 4170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G036380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCCACCGGCCTCAAAGCAGACACAGAGCTTGCTCTTGGCTTTGCCTCTTCTTCTAGACCTTTTTATTCGAAACCCAACTCCACCCATACCCAGCTATCCAGATTGCCATTGGGGTCTCTCCCTAACAACTTCTCCGGCCTCTCTATGGCTTCATCGAATGGAATTTGTCAGAGCAAACGCGTATGCTCACTTTCGAAGGATGATTCCGGTGAAAGCTCTGGTCAAAACGATGGTCTGACATATAAGGATGCTGGTGTTGATATAGACTCCGGTGATTCATATCTTGTTGCTGGTACTGATGGTGTGGGAACTAAACTGAAGCTTGCATTTGATACTGGAATTCATGAGACCATTGGTATTGATTTGGTAATACTAATACCCAAGATGATTCATGTGGTAGCTGTCAATGACATTGTCACTTCTGGAGCCAAGCTATTATGTTTTCTTGATTACTTTGCTACAAACCGTCTTGATGTTGATCTTGCTGAAAAGGTTATCAAGGGAATTGTTGATGTGAATTGCATATATTTTCAGACTGCCGAGACGCCGGGTTTCTATGCAAAGGGTGAGTATGACCTCAATAGTTTTGCAGTTGGATTTGTGAACAAGGAATCAGTGATTGATGGGAAAAACATTTTTGCTGGAGACGTCCTCATTGGCCTACCATCTAGTGGGGTTCATTCCAATGCTCATAGCGGGTTGTCTCTGAAGGACCAACTACTGGGTAACTATTACCTTGGCAAGGGAGGTGTGAAGGGGGTAGCCCGCATCACAGGAGGTGGTTTCACCCACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATAAAGATTCATGGGAAGTCCCAGTTGTTTTCAAATGGATCCAAGAGGATGCATCCCACAGAATACTTGAAGATGGAAATGGAGCATACTGCATTGGTGAGGTTATAACTGGTGAAGGAGTGAGTTATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

323

Amino Acids

34.32

Weight (kDa)

5.5

Isoelectric Point (pI)

24.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS	PF00586	83 - 201	5.3e-08	AIR synthase related protein, N-terminal domain
AIRS_C	PF02769	249 - 299	3.2e-06	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	944
AatII	GACGTC	1 cut(s)	654
AccB7I	CCANNNNNTGG	2 cut(s)	674, 724
AccII	CGCG	1 cut(s)	183
AciI	CCGC	2 cut(s)	699, 769
AclWI	GGATC	2 cut(s)	871, 884
AcsI	RAATTY	2 cut(s)	165, 342
AcuI	CTGAAG	2 cut(s)	341, 731
AcyI	GRCGYC	2 cut(s)	548, 651
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	4 cut(s)	148, 674, 724, 745
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	871, 908
AluBI	AGCT	7 cut(s)	31, 97, 219, 325, 404, 436, 830
AluI	AGCT	7 cut(s)	31, 97, 219, 325, 404, 436, 830
Alw26I	GTCTC	5 cut(s)	123, 344, 539, 642, 711
AlwI	GGATC	2 cut(s)	871, 884
AoxI	GGCC	4 cut(s)	10, 139, 661, 820
ApoI	RAATTY	2 cut(s)	165, 342
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
AspA2I	CCTAGG	1 cut(s)	823
AspS9I	GGNCC	1 cut(s)	715
AsuC2I	CCSGG	1 cut(s)	552
AsuHPI	GGTGA	6 cut(s)	224, 287, 581, 781, 947, 962
AsuII	TTCGAA	2 cut(s)	71, 197
AvaII	GGWCC	1 cut(s)	715
AvrII	CCTAGG	1 cut(s)	823
BamHI	GGATCC	1 cut(s)	876
BccI	CCATC	5 cut(s)	227, 296, 620, 676, 905
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	5 cut(s)	123, 344, 539, 642, 711
BfaI	CTAG	4 cut(s)	57, 672, 804, 824
BlnI	CCTAGG	1 cut(s)	823
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	1 cut(s)	715
BmgT120I	GGNCC	1 cut(s)	715
BmiI	GGNNCC	2 cut(s)	430, 878
BmrFI	CCNGG	1 cut(s)	552
BmrI	ACTGGG	2 cut(s)	734, 854
BmsI	GCATC	4 cut(s)	241, 780, 877, 899
BmuI	ACTGGG	2 cut(s)	734, 854
BplI	GAGNNNNNCTC	2 cut(s)	639, 671
BpmI	CTGGAG	2 cut(s)	447, 666
Bpu14I	TTCGAA	2 cut(s)	71, 197
BpuMI	CCSGG	1 cut(s)	552
BsaBI	GATNNNNATC	2 cut(s)	282, 480
BsaHI	GRCGYC	2 cut(s)	548, 651
BsaI	GGTCTC	2 cut(s)	123, 344
BsaJI	CCNNGG	2 cut(s)	739, 823
BsaWI	WCCGGW	2 cut(s)	209, 272
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 674, 724, 745
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	4 cut(s)	343, 729, 860, 952
Bse8I	GATNNNNATC	2 cut(s)	282, 480
BseDI	CCNNGG	2 cut(s)	739, 823
BseGI	GGATG	4 cut(s)	208, 256, 890, 892
BseJI	GATNNNNATC	2 cut(s)	282, 480
BseLI	CCNNNNNNNGG	4 cut(s)	148, 674, 724, 745
BseNI	ACTGG	4 cut(s)	343, 729, 860, 952
BseYI	CCCAGC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	4 cut(s)	12, 141, 663, 822
BsiSI	CCGG	5 cut(s)	9, 138, 210, 273, 551
BslFI	GGGAC	1 cut(s)	842
BslI	CCNNNNNNNGG	4 cut(s)	148, 674, 724, 745
BsmAI	GTCTC	5 cut(s)	123, 344, 539, 642, 711
BsmBI	CGTCTC	2 cut(s)	539, 642
BsmFI	GGGAC	1 cut(s)	842
BsnI	GGCC	4 cut(s)	12, 141, 663, 822
Bso31I	GGTCTC	2 cut(s)	123, 344
Bsp119I	TTCGAA	2 cut(s)	71, 197
Bsp143I	GATC	2 cut(s)	481, 876
BspACI	CCGC	2 cut(s)	699, 769
BspANI	GGCC	4 cut(s)	12, 141, 663, 822
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	430, 878
BspPI	GGATC	2 cut(s)	871, 884
BspT104I	TTCGAA	2 cut(s)	71, 197
BspTNI	GGTCTC	2 cut(s)	123, 344
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	4 cut(s)	343, 729, 860, 952
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	739, 823
BssMI	GATC	2 cut(s)	481, 876
BssNI	GRCGYC	2 cut(s)	548, 651
BssT1I	CCWWGG	2 cut(s)	739, 823
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	1 cut(s)	55
BstACI	GRCGYC	2 cut(s)	548, 651
BstBI	TTCGAA	2 cut(s)	71, 197
BstC8I	GCNNGC	3 cut(s)	33, 327, 769
BstENI	CCTNNNNNAGG	1 cut(s)	743
BstF5I	GGATG	4 cut(s)	208, 256, 890, 892
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	2 cut(s)	484, 879
BstMAI	GTCTC	5 cut(s)	123, 344, 539, 642, 711
BstMBI	GATC	2 cut(s)	481, 876
BstSCI	CCNGG	1 cut(s)	550
BstUI	CGCG	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	876
BstYI	RGATCY	1 cut(s)	876
BsuRI	GGCC	4 cut(s)	12, 141, 663, 822
BtsCI	GGATG	4 cut(s)	208, 256, 890, 892
BtsIMutI	CAGTG	1 cut(s)	624
Cac8I	GCNNGC	3 cut(s)	33, 327, 769
CciI	TCATGA	1 cut(s)	346
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	715
CseI	GACGC	1 cut(s)	556
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	3 cut(s)	347, 395, 849
CviQI	GTAC	1 cut(s)	297
DpnI	GATC	2 cut(s)	483, 878
DpnII	GATC	2 cut(s)	481, 876
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	739, 823
Eco147I	AGGCCT	1 cut(s)	822
Eco31I	GGTCTC	2 cut(s)	123, 344
Eco47I	GGWCC	1 cut(s)	715
Eco57I	CTGAAG	2 cut(s)	341, 731
EcoNI	CCTNNNNNAGG	1 cut(s)	743
EcoRI	GAATTC	1 cut(s)	342
EcoT14I	CCWWGG	2 cut(s)	739, 823
EcoT22I	ATGCAT	1 cut(s)	892
ErhI	CCWWGG	2 cut(s)	739, 823
Esp3I	CGTCTC	2 cut(s)	539, 642
FaeI	CATG	3 cut(s)	350, 398, 852
FaqI	GGGAC	1 cut(s)	842
FatI	CATG	3 cut(s)	346, 394, 848
FauI	CCCGC	2 cut(s)	692, 776
FokI	GGATG	4 cut(s)	215, 263, 877, 899
FspBI	CTAG	4 cut(s)	57, 672, 804, 824
GsaI	CCCAGC	1 cut(s)	97
GsuI	CTGGAG	2 cut(s)	447, 666
HaeIII	GGCC	4 cut(s)	12, 141, 663, 822
HapII	CCGG	5 cut(s)	9, 138, 210, 273, 551
HgaI	GACGC	1 cut(s)	556
Hin1I	GRCGYC	2 cut(s)	548, 651
Hin1II	CATG	3 cut(s)	350, 398, 852
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	6 cut(s)	206, 269, 278, 391, 614, 845
HpaII	CCGG	5 cut(s)	9, 138, 210, 273, 551
HphI	GGTGA	6 cut(s)	224, 287, 581, 781, 947, 962
Hpy166II	GTNNAC	2 cut(s)	6, 607
Hpy188I	TCNGA	4 cut(s)	174, 240, 537, 711
Hpy188III	TCNNGA	6 cut(s)	57, 102, 347, 426, 449, 473
Hpy8I	GTNNAC	2 cut(s)	6, 607
HpyAV	CCTTC	4 cut(s)	193, 706, 751, 947
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	1 cut(s)	651
HpyCH4V	TGCA	6 cut(s)	329, 525, 563, 593, 890, 930
HpySE526I	ACGT	1 cut(s)	651
Hsp92I	GRCGYC	2 cut(s)	548, 651
Hsp92II	CATG	3 cut(s)	350, 398, 852
Kzo9I	GATC	2 cut(s)	481, 876
LmnI	GCTCC	3 cut(s)	428, 827, 920
LweI	GCATC	4 cut(s)	241, 780, 877, 899
MaeI	CTAG	4 cut(s)	57, 672, 804, 824
MaeII	ACGT	1 cut(s)	651
MaeIII	GTNAC	2 cut(s)	418, 728
MalI	GATC	2 cut(s)	483, 878
MboI	GATC	2 cut(s)	481, 876
MboII	GAAGA	3 cut(s)	42, 45, 920
MflI	RGATCY	1 cut(s)	876
MluCI	AATT	4 cut(s)	165, 342, 507, 520
MluI	ACGCGT	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	9 cut(s)	23, 58, 152, 590, 665, 743, 773, 877, 931
Mph1103I	ATGCAT	1 cut(s)	892
MslI	CAYNNNNRTG	1 cut(s)	687
MspI	CCGG	5 cut(s)	9, 138, 210, 273, 551
MspR9I	CCNGG	1 cut(s)	552
MvnI	CGCG	1 cut(s)	183
NciI	CCSGG	1 cut(s)	552
NdeII	GATC	2 cut(s)	481, 876
NlaIII	CATG	3 cut(s)	350, 398, 852
NlaIV	GGNNCC	2 cut(s)	430, 878
NmeAIII	GCCGAG	1 cut(s)	568
NmuCI	GTSAC	1 cut(s)	418
NsiI	ATGCAT	1 cut(s)	892
NspV	TTCGAA	2 cut(s)	71, 197
PagI	TCATGA	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	822
PfeI	GAWTC	5 cut(s)	206, 278, 391, 614, 845
PflFI	GACNNNGTC	1 cut(s)	416
PflMI	CCANNNNNTGG	2 cut(s)	674, 724
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PsiI	TTATAA	1 cut(s)	944
PspFI	CCCAGC	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	430, 878
PspPI	GGNCC	1 cut(s)	715
PsuI	RGATCY	1 cut(s)	876
PsyI	GACNNNGTC	1 cut(s)	416
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	687
Sau3AI	GATC	2 cut(s)	481, 876
Sau96I	GGNCC	1 cut(s)	715
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	552
SfaNI	GCATC	4 cut(s)	241, 780, 877, 899
SfuI	TTCGAA	2 cut(s)	71, 197
SinI	GGWCC	1 cut(s)	715
SmiMI	CAYNNNNRTG	1 cut(s)	687
Sse9I	AATT	4 cut(s)	165, 342, 507, 520
SseBI	AGGCCT	1 cut(s)	822
SsiI	CCGC	2 cut(s)	699, 769
SspMI	CTAG	4 cut(s)	57, 672, 804, 824
StuI	AGGCCT	1 cut(s)	822
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	2 cut(s)	739, 823
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	1 cut(s)	654
TaqI	TCGA	3 cut(s)	71, 158, 197
TasI	AATT	4 cut(s)	165, 342, 507, 520
TfiI	GAWTC	5 cut(s)	206, 278, 391, 614, 845
TscAI	CASTG	1 cut(s)	624
TseFI	GTSAC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	6 cut(s)	144, 270, 335, 383, 671, 837
TspRI	CASTG	1 cut(s)	624
Tth111I	GACNNNGTC	1 cut(s)	416
Van91I	CCANNNNNTGG	2 cut(s)	674, 724
VpaK11BI	GGWCC	1 cut(s)	715
XagI	CCTNNNNNAGG	1 cut(s)	743
XapI	RAATTY	2 cut(s)	165, 342
XbaI	TCTAGA	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmaJI	CCTAGG	1 cut(s)	823
XspI	CTAG	4 cut(s)	57, 672, 804, 824
ZraI	GACGTC	1 cut(s)	652
Zsp2I	ATGCAT	1 cut(s)	892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.