Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

14895716 .. 14898292

Gene Structure 2577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23040.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTCCACCGCCCTCAAACCAAACGCAGAGCTTGCTCTTGCCTTTGCCTCTTCTTCTTCCAGACCCTCGTATTCGAAACCCAACTCCACCCAGCTACCCAGAATGCCCTCCGGGTCTCTCCCCAACAACTTCTCCGGCCTCTCATTGGCTTCATCCAGTGGACTTTCTCAGAGCAAACATGTATGCTCACTTTCGAAGAATGATTCCGGTGAAAGCTCTGGTGGGTTCTCGTATAAGGATGCTGGTGTGGATATAGATGCCGGGGCGGAGCTTGTTCGAAGAATTGCCAAAATGGCTCCTGGCATTGGAGGCTTTGGAGGTTTTTTCCCCCTCGATGATTCGTATCTCGTAGCTGGTACTGATGGTGTGGGAACTAAGCTTAAGCTCGCGTTTGATACTGGAATTCATGATACTATTGGTATTGATTTGGTTGCGATGAGTGTCAATGATATTGTCACTTCTGGAGCCAAGCCATTGTTTTTCCTTGATTATTATGCTACAAGCCGCCTTGATGTTGATCTTGCTGAAAAGGTTATCAAGGGAATTGTCGATGGTTGCCAACAATCTGACTGTGCTCTTTTAGGTGGAGAGACTGCCGAGATGCCGGGTTTCTATGCAGAGGGTGAGTATGATCTCAGTGGTTGTGCGGTTGGAATTGTGAAAAAGGACTCTGTGATTAACGGGAAAAACATTGTGGCTGGAGATGTCCTCATTGGCCTACCATCCAGTGGGGTTCATTCCAATGGCTTCTCTCTTGTAAGAAGGGTTCTAGCTCATAGCGGGCTGTCTCTAAAGGACCAACTTCCGGGTAAATCTGTTACATTAGGTGAAGCTTTAATGGCTCCCACAGTGATATATGTTAAGCAGGTGCTTAACATAATTAGCAAAGGCGGTGTGAAGGGGATAGCCCACATCACGGGAGGTGGTTTCACCGACAATATACCTAGAGTATTTCCAAAAGGCCTGGGAGCTGTCATCTATAATGGTTCATGGGAAATCCCAGCTGTTTTTAAATGGATCCAAGAGGCTGGAAGAATAGAAGATGCTGAAATGAGGCGAACTTTCAATATGGGTATTGGGATGGTTCTTGTTGTGAGTAGAGAGGCATCCCGCAGAATTCTTGAGGATGACAATGGAGCTTACTGCATTGGTGAGGTTGTAACTGGTGAAGGAGTGAGTTATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

396

Amino Acids

41.35

Weight (kDa)

5.64

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS	PF00586	112 - 214	1.4e-21	AIR synthase related protein, N-terminal domain
AIRS_C	PF02769	227 - 386	6.8e-35	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	856
Acc36I	ACCTGC	1 cut(s)	856
AccB7I	CCANNNNNTGG	1 cut(s)	728
AccII	CGCG	1 cut(s)	389
AciI	CCGC	7 cut(s)	9, 266, 505, 647, 780, 891, 1111
AclWI	GGATC	2 cut(s)	1012, 1025
AcsI	RAATTY	2 cut(s)	402, 1116
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	5 cut(s)	145, 305, 728, 805, 916
AflII	CTTAAG	1 cut(s)	380
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	1066
AjnI	CCWGG	2 cut(s)	298, 963
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	3 cut(s)	120, 584, 792
AlwI	GGATC	2 cut(s)	1012, 1025
AoxI	GGCC	3 cut(s)	136, 715, 961
ApoI	RAATTY	2 cut(s)	402, 1116
AspS9I	GGNCC	1 cut(s)	796
AsuC2I	CCSGG	4 cut(s)	112, 262, 606, 807
AsuHPI	GGTGA	6 cut(s)	221, 635, 839, 922, 1163, 1178
AsuII	TTCGAA	3 cut(s)	74, 194, 277
AvaII	GGWCC	1 cut(s)	796
BamHI	GGATCC	1 cut(s)	1017
Bbv12I	GWGCWC	1 cut(s)	577
BccI	CCATC	4 cut(s)	356, 545, 730, 1075
BciT130I	CCWGG	2 cut(s)	300, 965
BcnI	CCSGG	4 cut(s)	112, 262, 606, 807
BcoDI	GTCTC	3 cut(s)	120, 584, 792
BfaI	CTAG	2 cut(s)	770, 945
BfrI	CTTAAG	1 cut(s)	380
BfuAI	ACCTGC	1 cut(s)	856
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	505
BlsI	GCNGC	1 cut(s)	506
Bme1390I	CCNGG	6 cut(s)	112, 262, 300, 606, 807, 965
Bme18I	GGWCC	1 cut(s)	796
BmgT120I	GGNCC	1 cut(s)	796
BmiI	GGNNCC	4 cut(s)	297, 466, 843, 1019
BmrFI	CCNGG	6 cut(s)	112, 262, 300, 606, 807, 965
BmsI	GCATC	5 cut(s)	229, 247, 591, 1033, 1115
BplI	GAGNNNNNCTC	2 cut(s)	693, 725
BpmI	CTGGAG	2 cut(s)	483, 720
Bpu14I	TTCGAA	3 cut(s)	74, 194, 277
BpuEI	CTTGAG	1 cut(s)	1142
BpuMI	CCSGG	4 cut(s)	112, 262, 606, 807
BsaBI	GATNNNNATC	2 cut(s)	342, 516
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	261, 964
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	5 cut(s)	145, 305, 728, 805, 916
Bse1I	ACTGG	4 cut(s)	156, 403, 726, 1168
Bse8I	GATNNNNATC	2 cut(s)	342, 516
BseBI	CCWGG	2 cut(s)	300, 965
BseDI	CCNNGG	2 cut(s)	261, 964
BseGI	GGATG	6 cut(s)	152, 244, 722, 1086, 1106, 1132
BseJI	GATNNNNATC	2 cut(s)	342, 516
BseLI	CCNNNNNNNGG	5 cut(s)	145, 305, 728, 805, 916
BseMII	CTCAG	2 cut(s)	182, 649
BseNI	ACTGG	4 cut(s)	156, 403, 726, 1168
BseYI	CCCAGC	2 cut(s)	90, 1000
Bsh1236I	CGCG	1 cut(s)	389
BshFI	GGCC	3 cut(s)	138, 717, 963
BsiHKAI	GWGCWC	1 cut(s)	577
BsiSI	CCGG	6 cut(s)	111, 135, 207, 261, 605, 806
BslI	CCNNNNNNNGG	5 cut(s)	145, 305, 728, 805, 916
BsmAI	GTCTC	3 cut(s)	120, 584, 792
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	3 cut(s)	138, 717, 963
Bso31I	GGTCTC	1 cut(s)	120
Bsp119I	TTCGAA	3 cut(s)	74, 194, 277
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	3 cut(s)	517, 631, 1017
BspACI	CCGC	7 cut(s)	9, 266, 505, 647, 780, 891, 1111
BspANI	GGCC	3 cut(s)	138, 717, 963
BspCNI	CTCAG	2 cut(s)	181, 648
BspFNI	CGCG	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	4 cut(s)	297, 466, 843, 1019
BspMI	ACCTGC	1 cut(s)	856
BspPI	GGATC	2 cut(s)	1012, 1025
BspT104I	TTCGAA	3 cut(s)	74, 194, 277
BspTI	CTTAAG	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	120
BsrI	ACTGG	4 cut(s)	156, 403, 726, 1168
BssECI	CCNNGG	2 cut(s)	261, 964
BssMI	GATC	3 cut(s)	517, 631, 1017
Bst2UI	CCWGG	2 cut(s)	300, 965
Bst4CI	ACNGT	2 cut(s)	572, 850
Bst6I	CTCTTC	1 cut(s)	55
BstAFI	CTTAAG	1 cut(s)	380
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstBI	TTCGAA	3 cut(s)	74, 194, 277
BstC8I	GCNNGC	3 cut(s)	33, 387, 782
BstDEI	CTNAG	3 cut(s)	168, 375, 635
BstF5I	GGATG	6 cut(s)	152, 244, 722, 1086, 1106, 1132
BstFNI	CGCG	1 cut(s)	389
BstKTI	GATC	3 cut(s)	520, 634, 1020
BstMAI	GTCTC	3 cut(s)	120, 584, 792
BstMBI	GATC	3 cut(s)	517, 631, 1017
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 293, 309, 839
BstNI	CCWGG	2 cut(s)	300, 965
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	6 cut(s)	110, 260, 298, 604, 805, 963
BstUI	CGCG	1 cut(s)	389
BstX2I	RGATCY	1 cut(s)	1017
BstXI	CCANNNNNNTGG	1 cut(s)	1028
BstYI	RGATCY	1 cut(s)	1017
BsuRI	GGCC	3 cut(s)	138, 717, 963
BtgZI	GCGATG	1 cut(s)	449
BtsCI	GGATG	6 cut(s)	152, 244, 722, 1086, 1106, 1132
BtsIMutI	CAGTG	4 cut(s)	163, 643, 733, 855
BveI	ACCTGC	1 cut(s)	856
Cac8I	GCNNGC	3 cut(s)	33, 387, 782
CciI	TCATGA	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	796
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	3 cut(s)	179, 407, 990
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	3 cut(s)	168, 375, 635
DpnI	GATC	3 cut(s)	519, 633, 1019
DpnII	GATC	3 cut(s)	517, 631, 1017
DraI	TTTAAA	1 cut(s)	1012
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
EciI	GGCGGA	1 cut(s)	281
Eco147I	AGGCCT	1 cut(s)	963
Eco31I	GGTCTC	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	796
EcoRI	GAATTC	2 cut(s)	402, 1116
EcoRII	CCWGG	2 cut(s)	298, 963
FaeI	CATG	3 cut(s)	182, 410, 993
FatI	CATG	3 cut(s)	178, 406, 989
FauI	CCCGC	2 cut(s)	773, 1118
Fnu4HI	GCNGC	1 cut(s)	505
FokI	GGATG	6 cut(s)	139, 251, 709, 1093, 1093, 1139
Fsp4HI	GCNGC	1 cut(s)	505
FspBI	CTAG	2 cut(s)	770, 945
GluI	GCNGC	1 cut(s)	505
GsaI	CCCAGC	2 cut(s)	94, 1004
GsuI	CTGGAG	2 cut(s)	483, 720
HaeIII	GGCC	3 cut(s)	138, 717, 963
HapII	CCGG	6 cut(s)	111, 135, 207, 261, 605, 806
Hin1II	CATG	3 cut(s)	182, 410, 993
HindIII	AAGCTT	2 cut(s)	377, 831
HinfI	GANTC	3 cut(s)	203, 338, 668
HpaII	CCGG	6 cut(s)	111, 135, 207, 261, 605, 806
HphI	GGTGA	6 cut(s)	221, 635, 839, 922, 1163, 1178
Hpy166II	GTNNAC	2 cut(s)	6, 161
Hpy188I	TCNGA	2 cut(s)	171, 568
Hpy188III	TCNNGA	4 cut(s)	60, 407, 462, 1121
Hpy8I	GTNNAC	2 cut(s)	6, 161
HpyAV	CCTTC	3 cut(s)	756, 892, 1163
HpyCH4III	ACNGT	2 cut(s)	572, 850
HpyCH4V	TGCA	2 cut(s)	617, 1146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 293, 309, 839
HpyF3I	CTNAG	3 cut(s)	168, 375, 635
Hsp92II	CATG	3 cut(s)	182, 410, 993
Kzo9I	GATC	3 cut(s)	517, 631, 1017
LmnI	GCTCC	6 cut(s)	268, 301, 464, 847, 968, 1136
LweI	GCATC	5 cut(s)	229, 247, 591, 1033, 1115
MaeI	CTAG	2 cut(s)	770, 945
MaeIII	GTNAC	3 cut(s)	454, 817, 1159
MalI	GATC	3 cut(s)	519, 633, 1019
MboI	GATC	3 cut(s)	517, 631, 1017
MboII	GAAGA	7 cut(s)	42, 45, 48, 208, 291, 1044, 1052
MflI	RGATCY	1 cut(s)	1017
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	6 cut(s)	282, 402, 543, 654, 879, 1116
MlyI	GAGTC	1 cut(s)	662
MmeI	TCCRAC	1 cut(s)	631
MseI	TTAA	6 cut(s)	381, 678, 836, 861, 873, 1011
MslI	CAYNNNNRTG	1 cut(s)	741
MspA1I	CMGCKG	1 cut(s)	1004
MspCI	CTTAAG	1 cut(s)	380
MspI	CCGG	6 cut(s)	111, 135, 207, 261, 605, 806
MspR9I	CCNGG	6 cut(s)	112, 262, 300, 606, 807, 965
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	2 cut(s)	300, 965
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	4 cut(s)	32, 293, 309, 839
NciI	CCSGG	4 cut(s)	112, 262, 606, 807
NdeII	GATC	3 cut(s)	517, 631, 1017
NlaIII	CATG	3 cut(s)	182, 410, 993
NlaIV	GGNNCC	4 cut(s)	297, 466, 843, 1019
NmeAIII	GCCGAG	1 cut(s)	622
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	1 cut(s)	182
NspV	TTCGAA	3 cut(s)	74, 194, 277
PagI	TCATGA	1 cut(s)	406
PaqCI	CACCTGC	1 cut(s)	856
PceI	AGGCCT	1 cut(s)	963
PciI	ACATGT	1 cut(s)	178
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	203, 338
PflMI	CCANNNNNTGG	1 cut(s)	728
PkrI	GCNGC	1 cut(s)	506
PleI	GAGTC	1 cut(s)	662
PpsI	GAGTC	1 cut(s)	662
PscI	ACATGT	1 cut(s)	178
Psp6I	CCWGG	2 cut(s)	298, 963
PspFI	CCCAGC	2 cut(s)	90, 1000
PspGI	CCWGG	2 cut(s)	298, 963
PspN4I	GGNNCC	4 cut(s)	297, 466, 843, 1019
PspPI	GGNCC	1 cut(s)	796
PsrI	GAACNNNNNNTAC	2 cut(s)	750, 782
PsuI	RGATCY	1 cut(s)	1017
PvuII	CAGCTG	1 cut(s)	1004
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
RseI	CAYNNNNRTG	1 cut(s)	741
SaqAI	TTAA	6 cut(s)	381, 678, 836, 861, 873, 1011
SatI	GCNGC	1 cut(s)	505
Sau3AI	GATC	3 cut(s)	517, 631, 1017
Sau96I	GGNCC	1 cut(s)	796
SchI	GAGTC	1 cut(s)	662
ScrFI	CCNGG	6 cut(s)	112, 262, 300, 606, 807, 965
SduI	GDGCHC	1 cut(s)	577
SfaNI	GCATC	5 cut(s)	229, 247, 591, 1033, 1115
SfuI	TTCGAA	3 cut(s)	74, 194, 277
SinI	GGWCC	1 cut(s)	796
SmiMI	CAYNNNNRTG	1 cut(s)	741
SmlI	CTYRAG	2 cut(s)	380, 1121
SmoI	CTYRAG	2 cut(s)	380, 1121
Sse9I	AATT	6 cut(s)	282, 402, 543, 654, 879, 1116
SseBI	AGGCCT	1 cut(s)	963
SsiI	CCGC	7 cut(s)	9, 266, 505, 647, 780, 891, 1111
SspMI	CTAG	2 cut(s)	770, 945
StuI	AGGCCT	1 cut(s)	963
StyD4I	CCNGG	6 cut(s)	110, 260, 298, 604, 805, 963
TaaI	ACNGT	2 cut(s)	572, 850
TaqI	TCGA	5 cut(s)	74, 194, 277, 333, 549
TasI	AATT	6 cut(s)	282, 402, 543, 654, 879, 1116
TauI	GCSGC	1 cut(s)	507
TfiI	GAWTC	2 cut(s)	203, 338
Tru1I	TTAA	6 cut(s)	381, 678, 836, 861, 873, 1011
Tru9I	TTAA	6 cut(s)	381, 678, 836, 861, 873, 1011
TscAI	CASTG	4 cut(s)	163, 643, 733, 855
TseFI	GTSAC	1 cut(s)	454
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	4 cut(s)	141, 395, 725, 978
TspRI	CASTG	4 cut(s)	163, 643, 733, 855
Van91I	CCANNNNNTGG	1 cut(s)	728
Vha464I	CTTAAG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	796
XapI	RAATTY	2 cut(s)	402, 1116
XceI	RCATGY	1 cut(s)	182
XspI	CTAG	2 cut(s)	770, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.