Rorug05G0322200

Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
38562796 .. 38563173
378 bp
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UTR
Exon/CDS
Intron
Rorug05G0322200.1

Sequence Viewer

Length: 378 bp
ATGGGCATATCATTGTATGACCTAAAACTTATTGGTGGTTTACCAATTTCAGGAGTTGATCCTTATGAAGAGTTCATTCCTGAGAACAAAGAGTTGCACCGAGATGGGCCATACCCTGCTACACTTTTTGAGCTTTTATGCATTCACTCCCAACTATGTGTCTCAAATAAGCAGAAATTTGTACGTTGGGAGGGATGGGTCAGACAATTTTATAGAGGGCAGCTACTATACACAGCTTATGGCGAGGACACACAACAAATAAGCCATGCACAGCACGAAAAATTTATGAGTTCCCGACCTACTTTGAAGGTTTCGAGAGAAGAGGAATTGACTGCTTTCCTAGCTTATTGGCTTAATAGGTTTGTCTTGCCTTCTTAG

Protein Analysis

125

Amino Acids

14.61

Weight (kDa)

6.06

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 2 cut(s) 176, 281
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 1 cut(s) 307
AluBI AGCT 4 cut(s) 133, 223, 236, 344
AluI AGCT 4 cut(s) 133, 223, 236, 344
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 1 cut(s) 53
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 2 cut(s) 176, 281
AspS9I GGNCC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 232
BccI CCATC 2 cut(s) 98, 189
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 1 cut(s) 341
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 50
BseGI GGATG 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 232
BshFI GGCC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 166
BsmI GAATGC 1 cut(s) 141
BsnI GGCC 1 cut(s) 109
Bsp143I GATC 1 cut(s) 58
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 73
BspPI GGATC 1 cut(s) 53
BssMI GATC 1 cut(s) 58
Bst6I CTCTTC 2 cut(s) 63, 315
BstDEI CTNAG 2 cut(s) 81, 375
BstF5I GGATG 1 cut(s) 200
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 232
BsuRI GGCC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 182
CviAII CATG 1 cut(s) 266
CviJI RGCY 7 cut(s) 109, 133, 223, 236, 264, 344, 352
CviKI_1 RGCY 7 cut(s) 109, 133, 223, 236, 264, 344, 352
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 2 cut(s) 81, 375
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 63, 315
EarI CTCTTC 2 cut(s) 63, 315
EcoT22I ATGCAT 1 cut(s) 143
FaeI CATG 1 cut(s) 269
FatI CATG 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 1 cut(s) 341
GluI GCNGC 1 cut(s) 221
HaeIII GGCC 1 cut(s) 109
Hin1II CATG 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 203
Hpy188III TCNNGA 4 cut(s) 51, 80, 294, 315
Hpy8I GTNNAC 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 301
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 3 cut(s) 97, 141, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 2 cut(s) 81, 375
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 1 cut(s) 269
Kzo9I GATC 1 cut(s) 58
LpnPI CCDG 3 cut(s) 36, 93, 129
Lsp1109I GCAGC 1 cut(s) 232
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 184
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 2 cut(s) 80, 332
MluCI AATT 5 cut(s) 45, 176, 206, 281, 326
MnlI CCTC 4 cut(s) 184, 209, 238, 316
Mph1103I ATGCAT 1 cut(s) 143
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 341
NdeII GATC 1 cut(s) 58
NlaIII CATG 1 cut(s) 269
NsiI ATGCAT 1 cut(s) 143
PctI GAATGC 1 cut(s) 141
PkrI GCNGC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 107
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 1 cut(s) 107
SetI ASST 9 cut(s) 24, 135, 187, 225, 238, 301, 312, 346, 362
SmiMI CAYNNNNRTG 1 cut(s) 102
Sse9I AATT 5 cut(s) 45, 176, 206, 281, 326
SspMI CTAG 1 cut(s) 341
TaiI ACGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 314
TasI AATT 5 cut(s) 45, 176, 206, 281, 326
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TseI GCWGC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 64, 81
XapI RAATTY 2 cut(s) 176, 281
XspI CTAG 1 cut(s) 341
Zsp2I ATGCAT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.