Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Forward (+)

60277632 .. 60279304

Gene Structure 1673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33346

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTTATCAAGGGAATTATGGATGGTTGCCAACAATCTGACTATGCTCTTTTAGGTGGAGAGACCACCGAGATGCCGGGTTTCTATGCAGAGGGTGAGTATGACCTCAGTGGTTTTGTGGTTGGAATTGTGAAGAAGGAATCAGTGATTGATGGGAAAAACATTTTGGCTGGAGATGTCCTCATTGGCCTACCATCTAGTGGGGTTCATTCCAATGGTTTTCTCTTGTTTCTAGCTCATAGTGGGTTGTCTCTCAAAGACCAACTACTGGGTAACTCTGTTACCTTGGGTGAAGCTTTGATGGCCCCCACAGTGATATATGTTAAGCAGCAAGGGAAGTGTGAAGGGTACCACATCACAGGAGGTGGTCTCACCGACAATATACCTAGAGTATTTCCAAAAGGCCGAGGAGCTGTCATCTATAAAGAAGATTCATGGGAAGTCCCAACTGTTTTCAAATGGATCCAGGAGGTAACGAGAATTTCACTTGTCTTGTTGGCTGGTGTTAGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

171

Amino Acids

18.26

Weight (kDa)

5.13

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	57 - 157	5.2e-15	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	348
AccB1I	GGYRCC	1 cut(s)	348
AccB7I	CCANNNNNTGG	2 cut(s)	200, 268
AclWI	GGATC	2 cut(s)	457, 470
AcsI	RAATTY	1 cut(s)	480
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	200, 268
AgsI	TTSAA	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	465
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	3 cut(s)	236, 296, 413
AluI	AGCT	3 cut(s)	236, 296, 413
Alw26I	GTCTC	3 cut(s)	56, 255, 374
AlwI	GGATC	2 cut(s)	457, 470
AoxI	GGCC	3 cut(s)	187, 303, 403
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	1 cut(s)	480
Asp718I	GGTACC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	3 cut(s)	107, 302, 364
BamHI	GGATCC	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	4 cut(s)	17, 146, 202, 295
BciT130I	CCWGG	1 cut(s)	467
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	3 cut(s)	56, 255, 374
BfaI	CTAG	3 cut(s)	198, 233, 387
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
Bme1390I	CCNGG	2 cut(s)	78, 467
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	3 cut(s)	306, 350, 464
BmrFI	CCNGG	2 cut(s)	78, 467
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	63
BmuI	ACTGGG	1 cut(s)	278
BplI	GAGNNNNNCTC	4 cut(s)	165, 197, 354, 386
BpmI	CTGGAG	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	78
BsaI	GGTCTC	2 cut(s)	56, 374
BsaJI	CCNNGG	2 cut(s)	285, 406
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 268
Bse1I	ACTGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	2 cut(s)	285, 406
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	2 cut(s)	200, 268
BseMII	CTCAG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	340
BshFI	GGCC	3 cut(s)	189, 305, 405
BshNI	GGYRCC	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	200, 268
BsmAI	GTCTC	3 cut(s)	56, 255, 374
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	3 cut(s)	189, 305, 405
Bso31I	GGTCTC	2 cut(s)	56, 374
Bsp143I	GATC	1 cut(s)	462
BspANI	GGCC	3 cut(s)	189, 305, 405
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	306, 350, 464
BspPI	GGATC	2 cut(s)	457, 470
BspT107I	GGYRCC	1 cut(s)	348
BspTNI	GGTCTC	2 cut(s)	56, 374
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	285, 406
BssMI	GATC	1 cut(s)	462
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	2 cut(s)	313, 451
BstDEI	CTNAG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	465
BstMAI	GTCTC	3 cut(s)	56, 255, 374
BstMBI	GATC	1 cut(s)	462
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	76, 465
BstV1I	GCAGC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	189, 305, 405
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	3 cut(s)	115, 150, 318
Cfr13I	GGNCC	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	1 cut(s)	435
CviJI	RGCY	8 cut(s)	170, 189, 236, 296, 305, 405, 413, 500
CviKI_1	RGCY	8 cut(s)	170, 189, 236, 296, 305, 405, 413, 500
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	1 cut(s)	464
DpnII	GATC	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	285
Eco31I	GGTCTC	2 cut(s)	56, 374
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	1 cut(s)	438
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	1 cut(s)	434
Fnu4HI	GCNGC	1 cut(s)	329
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	329
FspBI	CTAG	3 cut(s)	198, 233, 387
GluI	GCNGC	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	3 cut(s)	189, 305, 405
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	1 cut(s)	438
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	2 cut(s)	140, 431
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	3 cut(s)	107, 302, 364
Hpy188I	TCNGA	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	130, 338
HpyCH4III	ACNGT	2 cut(s)	313, 451
HpyCH4V	TGCA	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	438
KpnI	GGTACC	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	462
LmnI	GCTCC	1 cut(s)	410
LpnPI	CCDG	7 cut(s)	90, 156, 254, 345, 452, 479, 486
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	3 cut(s)	198, 233, 387
MaeIII	GTNAC	3 cut(s)	272, 280, 472
MalI	GATC	1 cut(s)	464
MboI	GATC	1 cut(s)	462
MboII	GAAGA	2 cut(s)	145, 440
MflI	RGATCY	1 cut(s)	462
MluCI	AATT	3 cut(s)	15, 126, 480
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	6 cut(s)	85, 116, 191, 356, 401, 463
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	2 cut(s)	71, 213
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	2 cut(s)	78, 467
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	1 cut(s)	302
NciI	CCSGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	462
NlaIII	CATG	1 cut(s)	438
NlaIV	GGNNCC	3 cut(s)	306, 350, 464
NmeAIII	GCCGAG	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	140, 431
PflMI	CCANNNNNTGG	2 cut(s)	200, 268
PfoI	TCCNGGA	1 cut(s)	465
PkrI	GCNGC	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	3 cut(s)	306, 350, 464
PspPI	GGNCC	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	462
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	2 cut(s)	71, 213
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	1 cut(s)	462
Sau96I	GGNCC	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	78, 467
SetI	ASST	9 cut(s)	58, 108, 238, 287, 298, 367, 388, 415, 474
SfaNI	GCATC	1 cut(s)	63
SmiMI	CAYNNNNRTG	2 cut(s)	71, 213
Sse9I	AATT	3 cut(s)	15, 126, 480
SspMI	CTAG	3 cut(s)	198, 233, 387
StyD4I	CCNGG	2 cut(s)	76, 465
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	313, 451
TasI	AATT	3 cut(s)	15, 126, 480
TfiI	GAWTC	2 cut(s)	140, 431
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	3 cut(s)	115, 150, 318
TseI	GCWGC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	197, 423
TspRI	CASTG	3 cut(s)	115, 150, 318
Van91I	CCANNNNNTGG	2 cut(s)	200, 268
XapI	RAATTY	1 cut(s)	480
XspI	CTAG	3 cut(s)	198, 233, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.