Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Forward (+)

34027670 .. 34055270

Gene Structure 27601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG185700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCTATTAATTTGCAAGGAGACCAAGTGAAGCCAGTACTTGATCTGGTGAATCCTCAACGTAAGGTTCTAGCTCATAGTGGGTTGTCTCTCAAAGAACAACTACTGGGTAACTCTGTTACCTTGGGTGAAGCTTTGATGGCCCCCACAGTGATATATGTTAAGCAGGTACTTGACATAATCCGCAAGGGAAGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGGTCTCACCGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATAAGGAAGATTCATGGGAAGTCCCAGCTGTTTTCAAATGGATCCAGGAGCTGGAGGGTGCTGTGATCATTTGCTTCACTTATGGGAAAGGATATCCTGGAAATCAACCATCCCGAAAGTCCTTTCGGCACAAAGACCAGAGTGATATGAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

145

Amino Acids

15.94

Weight (kDa)

9.38

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	21 - 112	3.5e-16	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AccB7I	CCANNNNNTGG	1 cut(s)	331
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	2 cut(s)	316, 329
AcsI	RAATTY	1 cut(s)	431
AfaI	GTAC	2 cut(s)	39, 171
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	316
AjnI	CCWGG	2 cut(s)	324, 376
AluBI	AGCT	5 cut(s)	74, 134, 272, 308, 331
AluI	AGCT	5 cut(s)	74, 134, 272, 308, 331
Alw26I	GTCTC	3 cut(s)	15, 93, 233
AlwI	GGATC	2 cut(s)	316, 329
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	2 cut(s)	141, 262
ApoI	RAATTY	1 cut(s)	431
AseI	ATTAAT	1 cut(s)	9
AspA2I	CCTAGG	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	3 cut(s)	61, 140, 223
AvrII	CCTAGG	1 cut(s)	265
BamHI	GGATCC	1 cut(s)	321
BccI	CCATC	2 cut(s)	133, 397
BciT130I	CCWGG	2 cut(s)	326, 378
BclI	TGATCA	1 cut(s)	345
BcoDI	GTCTC	3 cut(s)	15, 93, 233
BfaI	CTAG	3 cut(s)	71, 246, 266
BfuAI	ACCTGC	1 cut(s)	157
BlnI	CCTAGG	1 cut(s)	265
BmcAI	AGTACT	1 cut(s)	39
Bme1390I	CCNGG	2 cut(s)	326, 378
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	144, 323
BmrFI	CCNGG	2 cut(s)	326, 378
BmrI	ACTGGG	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	116
BplI	GAGNNNNNCTC	2 cut(s)	213, 245
BpmI	CTGGAG	1 cut(s)	353
BsaI	GGTCTC	2 cut(s)	15, 233
BsaJI	CCNNGG	2 cut(s)	123, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	2 cut(s)	35, 111
BseBI	CCWGG	2 cut(s)	326, 378
BseDI	CCNNGG	2 cut(s)	123, 265
BseGI	GGATG	1 cut(s)	389
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseNI	ACTGG	2 cut(s)	35, 111
BseYI	CCCAGC	1 cut(s)	304
BshFI	GGCC	2 cut(s)	143, 264
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	3 cut(s)	15, 93, 233
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	143, 264
Bso31I	GGTCTC	2 cut(s)	15, 233
Bsp143I	GATC	3 cut(s)	43, 321, 345
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	2 cut(s)	143, 264
BspLI	GGNNCC	2 cut(s)	144, 323
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	2 cut(s)	316, 329
BspTNI	GGTCTC	2 cut(s)	15, 233
BsrI	ACTGG	2 cut(s)	35, 111
BssECI	CCNNGG	2 cut(s)	123, 265
BssMI	GATC	3 cut(s)	43, 321, 345
BssT1I	CCWWGG	2 cut(s)	123, 265
Bst2UI	CCWGG	2 cut(s)	326, 378
Bst4CI	ACNGT	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	389
BstKTI	GATC	3 cut(s)	46, 324, 348
BstMAI	GTCTC	3 cut(s)	15, 93, 233
BstMBI	GATC	3 cut(s)	43, 321, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	2 cut(s)	326, 378
BstSCI	CCNGG	2 cut(s)	324, 376
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	143, 264
BtsCI	GGATG	1 cut(s)	389
BtsIMutI	CAGTG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	157
CaiI	CAGNNNCTG	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	38, 170
CviAII	CATG	1 cut(s)	294
CviJI	RGCY	9 cut(s)	34, 74, 134, 143, 209, 264, 272, 308, 331
CviKI_1	RGCY	9 cut(s)	34, 74, 134, 143, 209, 264, 272, 308, 331
CviQI	GTAC	2 cut(s)	38, 170
DpnI	GATC	3 cut(s)	45, 323, 347
DpnII	GATC	3 cut(s)	43, 321, 345
Eco130I	CCWWGG	2 cut(s)	123, 265
Eco147I	AGGCCT	1 cut(s)	264
Eco31I	GGTCTC	2 cut(s)	15, 233
Eco32I	GATATC	1 cut(s)	374
EcoRII	CCWGG	2 cut(s)	324, 376
EcoRV	GATATC	1 cut(s)	374
EcoT14I	CCWWGG	2 cut(s)	123, 265
ErhI	CCWWGG	2 cut(s)	123, 265
FaeI	CATG	1 cut(s)	297
FaiI	YATR	9 cut(s)	78, 157, 159, 179, 242, 282, 295, 363, 428
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	345
FokI	GGATG	1 cut(s)	376
FspBI	CTAG	3 cut(s)	71, 246, 266
GsaI	CCCAGC	1 cut(s)	308
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	143, 264
Hin1II	CATG	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	2 cut(s)	52, 290
HphI	GGTGA	3 cut(s)	61, 140, 223
Hpy188III	TCNNGA	1 cut(s)	393
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	1 cut(s)	297
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	3 cut(s)	43, 321, 345
LmnI	GCTCC	2 cut(s)	269, 328
MaeI	CTAG	3 cut(s)	71, 246, 266
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	2 cut(s)	110, 118
MalI	GATC	3 cut(s)	45, 323, 347
MboI	GATC	3 cut(s)	43, 321, 345
MboII	GAAGA	1 cut(s)	299
MflI	RGATCY	1 cut(s)	321
MluCI	AATT	2 cut(s)	10, 431
MnlI	CCTC	3 cut(s)	66, 215, 328
MseI	TTAA	2 cut(s)	9, 162
MspA1I	CMGCKG	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	326, 378
MvaI	CCWGG	2 cut(s)	326, 378
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	3 cut(s)	43, 321, 345
NlaIII	CATG	1 cut(s)	297
NlaIV	GGNNCC	2 cut(s)	144, 323
PceI	AGGCCT	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	52, 290
PflMI	CCANNNNNTGG	1 cut(s)	331
PfoI	TCCNGGA	2 cut(s)	324, 376
PshBI	ATTAAT	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	324, 376
PspFI	CCCAGC	1 cut(s)	304
PspGI	CCWGG	2 cut(s)	324, 376
PspN4I	GGNNCC	2 cut(s)	144, 323
PspPI	GGNCC	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	321
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	2 cut(s)	39, 171
RsaNI	GTAC	2 cut(s)	38, 170
SaqAI	TTAA	2 cut(s)	9, 162
Sau3AI	GATC	3 cut(s)	43, 321, 345
Sau96I	GGNCC	1 cut(s)	142
ScaI	AGTACT	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	326, 378
Sse9I	AATT	2 cut(s)	10, 431
SseBI	AGGCCT	1 cut(s)	264
SsiI	CCGC	1 cut(s)	184
SspMI	CTAG	3 cut(s)	71, 246, 266
StuI	AGGCCT	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	324, 376
StyI	CCWWGG	2 cut(s)	123, 265
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	64
TasI	AATT	2 cut(s)	10, 431
TatI	WGTACW	1 cut(s)	37
TfiI	GAWTC	2 cut(s)	52, 290
Tru1I	TTAA	2 cut(s)	9, 162
Tru9I	TTAA	2 cut(s)	9, 162
TscAI	CASTG	1 cut(s)	156
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	331
VspI	ATTAAT	1 cut(s)	9
XapI	RAATTY	1 cut(s)	431
XmaJI	CCTAGG	1 cut(s)	265
XspI	CTAG	3 cut(s)	71, 246, 266
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.