Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

31195191 .. 31197009

Gene Structure 1819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG277000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGACAAAATTTGCGCCGGTACATCTTTATAGGGTTCTAGCTCATAGCGGATTGTCTCTGAAGGACCAACTACCGGGTAACTCTGTTACCTTGGGTGAAGCTTTGATGGCCCCCACAGTGATATATGTTAAGCAGGTGCTTGACATAATTAGAAAGGGAGGTGTCAAGGGGGTAGCCCACATCACAGGAGGTGGTTTCACCGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATGAAGATTCATGGGAAGTCCCAGCTGTTTTCAAATGGATCCAGGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGACGAACTTTTAATATGGGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGGCATCCCACAGAATACTTGAAGACGGAAATGGAGCTTACTACATTGGTGAGGTTATAACTGGTGAAGGAGCACAACTTAAGAGGCTTGAGACATGGTCTTCAACTGGGAAGATTTGGTTGGTGGGGCTTAATTTGAATACTGGGTTTTGTAATCTTGACTCTGTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

180

Amino Acids

19.6

Weight (kDa)

6.43

Isoelectric Point (pI)

23.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	19 - 148	4.1e-27	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	428
AarI	CACCTGC	1 cut(s)	124
Acc36I	ACCTGC	1 cut(s)	124
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	2 cut(s)	280, 293
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflII	CTTAAG	1 cut(s)	449
AgsI	TTSAA	4 cut(s)	280, 392, 474, 508
AjnI	CCWGG	1 cut(s)	288
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AluBI	AGCT	5 cut(s)	41, 101, 239, 272, 407
AluI	AGCT	5 cut(s)	41, 101, 239, 272, 407
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	3 cut(s)	60, 316, 455
AlwI	GGATC	2 cut(s)	280, 293
AoxI	GGCC	2 cut(s)	108, 229
ApoI	RAATTY	1 cut(s)	8
AspA2I	CCTAGG	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	2 cut(s)	64, 109
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	4 cut(s)	107, 190, 431, 446
AvaII	GGWCC	1 cut(s)	64
AvrII	CCTAGG	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	285
BbsI	GAAGAC	2 cut(s)	399, 462
Bbv12I	GWGCWC	1 cut(s)	445
BccI	CCATC	2 cut(s)	100, 343
BciT130I	CCWGG	1 cut(s)	290
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	3 cut(s)	60, 316, 455
BfaI	CTAG	3 cut(s)	38, 213, 233
BfrI	CTTAAG	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	124
BlnI	CCTAGG	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	75, 290
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	64, 109
BmiI	GGNNCC	2 cut(s)	111, 287
BmrFI	CCNGG	2 cut(s)	75, 290
BmrI	ACTGGG	2 cut(s)	486, 522
BmsI	GCATC	2 cut(s)	301, 383
BmuI	ACTGGG	2 cut(s)	486, 522
BpiI	GAAGAC	2 cut(s)	399, 462
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	90, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	3 cut(s)	436, 481, 517
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	90, 232
BseGI	GGATG	2 cut(s)	354, 374
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseNI	ACTGG	3 cut(s)	436, 481, 517
BseYI	CCCAGC	1 cut(s)	268
BshFI	GGCC	2 cut(s)	110, 231
BsiHKAI	GWGCWC	1 cut(s)	445
BsiSI	CCGG	2 cut(s)	17, 74
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	3 cut(s)	60, 316, 455
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	110, 231
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	110, 231
BspLI	GGNNCC	2 cut(s)	111, 287
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	2 cut(s)	280, 293
BspTI	CTTAAG	1 cut(s)	449
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	3 cut(s)	436, 481, 517
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	90, 232
BssMI	GATC	1 cut(s)	285
BssT1I	CCWWGG	2 cut(s)	90, 232
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	295
BstAFI	CTTAAG	1 cut(s)	449
BstF5I	GGATG	2 cut(s)	354, 374
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	3 cut(s)	60, 316, 455
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	73, 288
BstV2I	GAAGAC	2 cut(s)	399, 462
BstX2I	RGATCY	1 cut(s)	285
BstXI	CCANNNNNNTGG	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	110, 231
BtsCI	GGATG	2 cut(s)	354, 374
BtsIMutI	CAGTG	1 cut(s)	123
BveI	ACCTGC	1 cut(s)	124
CfoI	GCGC	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	2 cut(s)	64, 109
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	2 cut(s)	258, 465
CviQI	GTAC	1 cut(s)	20
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Eco130I	CCWWGG	2 cut(s)	90, 232
Eco147I	AGGCCT	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	2 cut(s)	90, 232
ErhI	CCWWGG	2 cut(s)	90, 232
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	2 cut(s)	261, 468
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	2 cut(s)	257, 464
FokI	GGATG	2 cut(s)	361, 361
FspBI	CTAG	3 cut(s)	38, 213, 233
GlaI	GCGC	1 cut(s)	15
GsaI	CCCAGC	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	110, 231
HapII	CCGG	2 cut(s)	17, 74
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	2 cut(s)	261, 468
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	2 cut(s)	254, 530
HpaII	CCGG	2 cut(s)	17, 74
HphI	GGTGA	4 cut(s)	107, 190, 431, 446
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	1 cut(s)	527
Hpy8I	GTNNAC	1 cut(s)	538
HpyAV	CCTTC	2 cut(s)	55, 431
HpyCH4III	ACNGT	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	261, 468
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	3 cut(s)	236, 404, 440
LweI	GCATC	2 cut(s)	301, 383
MaeI	CTAG	3 cut(s)	38, 213, 233
MaeIII	GTNAC	2 cut(s)	77, 85
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	6 cut(s)	263, 312, 320, 404, 462, 493
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	3 cut(s)	8, 147, 502
MlyI	GAGTC	1 cut(s)	524
MnlI	CCTC	6 cut(s)	152, 182, 286, 364, 415, 447
MseI	TTAA	4 cut(s)	129, 333, 450, 501
MspA1I	CMGCKG	1 cut(s)	272
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	2 cut(s)	17, 74
MspR9I	CCNGG	2 cut(s)	75, 290
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	107
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	2 cut(s)	261, 468
NlaIV	GGNNCC	2 cut(s)	111, 287
PaqCI	CACCTGC	1 cut(s)	124
PceI	AGGCCT	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	254
PflFI	GACNNNGTC	1 cut(s)	466
PfoI	TCCNGGA	1 cut(s)	288
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
PsiI	TTATAA	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	288
PspFI	CCCAGC	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	111, 287
PspPI	GGNCC	2 cut(s)	64, 109
PsuI	RGATCY	1 cut(s)	285
PsyI	GACNNNGTC	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SaqAI	TTAA	4 cut(s)	129, 333, 450, 501
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	2 cut(s)	64, 109
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	2 cut(s)	75, 290
SduI	GDGCHC	1 cut(s)	445
SfaNI	GCATC	2 cut(s)	301, 383
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	449, 458
SmoI	CTYRAG	2 cut(s)	449, 458
Sse9I	AATT	3 cut(s)	8, 147, 502
SseBI	AGGCCT	1 cut(s)	231
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	3 cut(s)	38, 213, 233
StuI	AGGCCT	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	73, 288
StyI	CCWWGG	2 cut(s)	90, 232
TaaI	ACNGT	1 cut(s)	118
TasI	AATT	3 cut(s)	8, 147, 502
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	4 cut(s)	129, 333, 450, 501
Tru9I	TTAA	4 cut(s)	129, 333, 450, 501
TscAI	CASTG	1 cut(s)	123
TspDTI	ATGAA	2 cut(s)	246, 264
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	1 cut(s)	123
Tth111I	GACNNNGTC	1 cut(s)	466
Vha464I	CTTAAG	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	8
XmaJI	CCTAGG	1 cut(s)	232
XspI	CTAG	3 cut(s)	38, 213, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.