Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

34909373 .. 34909834

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG295300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCTTTCTGCTTTTTGCTTTTGCTTGCTGAAACAGGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGGTCTCACCGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATAAAGATTCATGGGAAGTGTCAGCTGTTTTCAAATGGATCCAGGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGAAGAACTTTTAATATGGGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGACATCCCACAGAATACTTAAAGATGGAAATGGAGCTTACTGTATTGGTGAGGTTATAACTGGTGAAGGAGTGAGTTATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

118

Amino Acids

12.81

Weight (kDa)

8.49

Isoelectric Point (pI)

21.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	13 - 115	1.3e-18	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
AclWI	GGATC	2 cut(s)	181, 194
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	3 cut(s)	140, 173, 308
AluI	AGCT	3 cut(s)	140, 173, 308
Alw26I	GTCTC	2 cut(s)	101, 266
AlwI	GGATC	2 cut(s)	181, 194
AoxI	GGCC	1 cut(s)	130
AspA2I	CCTAGG	1 cut(s)	133
AsuHPI	GGTGA	3 cut(s)	91, 332, 347
AvrII	CCTAGG	1 cut(s)	133
BamHI	GGATCC	1 cut(s)	186
BccI	CCATC	2 cut(s)	244, 290
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	101, 266
BfaI	CTAG	2 cut(s)	114, 134
BlnI	CCTAGG	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	202
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	255, 275
BseNI	ACTGG	1 cut(s)	337
BshFI	GGCC	1 cut(s)	132
BsmAI	GTCTC	2 cut(s)	101, 266
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	188
BspPI	GGATC	2 cut(s)	181, 194
BspTNI	GGTCTC	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	255, 275
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	2 cut(s)	101, 266
BstMBI	GATC	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	186
BstXI	CCANNNNNNTGG	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	255, 275
Cac8I	GCNNGC	1 cut(s)	26
CviAII	CATG	1 cut(s)	159
CviJI	RGCY	6 cut(s)	77, 132, 140, 173, 197, 308
CviKI_1	RGCY	6 cut(s)	77, 132, 140, 173, 197, 308
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	133
Eco147I	AGGCCT	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	1 cut(s)	162
FaiI	YATR	7 cut(s)	47, 110, 150, 160, 239, 329, 351
FatI	CATG	1 cut(s)	158
FokI	GGATG	2 cut(s)	262, 262
FspBI	CTAG	2 cut(s)	114, 134
HaeIII	GGCC	1 cut(s)	132
Hin1II	CATG	1 cut(s)	162
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	3 cut(s)	91, 332, 347
HpyAV	CCTTC	2 cut(s)	61, 332
HpyCH4III	ACNGT	1 cut(s)	314
Hsp92II	CATG	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	186
LmnI	GCTCC	2 cut(s)	137, 305
LpnPI	CCDG	6 cut(s)	20, 72, 176, 183, 203, 318
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	114, 134
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	3 cut(s)	213, 221, 237
MflI	RGATCY	1 cut(s)	186
MluCI	AATT	1 cut(s)	48
MnlI	CCTC	4 cut(s)	53, 83, 187, 316
MseI	TTAA	2 cut(s)	234, 291
MspA1I	CMGCKG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	1 cut(s)	162
NlaIV	GGNNCC	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	155
PfoI	TCCNGGA	1 cut(s)	189
PsiI	TTATAA	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	234, 291
Sau3AI	GATC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	8 cut(s)	39, 64, 94, 115, 142, 175, 310, 327
SfaNI	GCATC	1 cut(s)	202
Sse9I	AATT	1 cut(s)	48
SseBI	AGGCCT	1 cut(s)	132
SspMI	CTAG	2 cut(s)	114, 134
StuI	AGGCCT	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	314
TasI	AATT	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	2 cut(s)	234, 291
Tru9I	TTAA	2 cut(s)	234, 291
TspDTI	ATGAA	1 cut(s)	147
XmaJI	CCTAGG	1 cut(s)	133
XspI	CTAG	2 cut(s)	114, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.