Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

37462665 .. 37464451

Gene Structure 1787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG317600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGATTTTCTCAGAGCAAGCGTGTATGTTCACTTTCGAAGAATGACTCCGGTGAAAGCTCTAGGTCAAAATGGTGGTTTTACCTATAAGAATGCTGGTGTTGATATAGACGCCGGGTCGGAACTTGTTCGACGAATTGCCAAGATGGCTCTTGGGATTGGAGGCTTTGGAGGCTTTGGAGGCTTTGGAGGCTTTTTCCCTCTCGGTGATCATTTTCTTGTTGCTGGTACTGATGGTGTGGGAACTAAACTTAAGCTTGCATTTGATACCGGAATTTATGAGACCATTGGTATTGATTTCGTTGCTATGAGTGTCAATGATATTGTCACTTCTGGAGCCAAGCCATTATTTTTCCTTGATTGCTTTGCTACAAGCTGCCTTGATGTTGATCTTGCTGAAAAGGTTATCAAGGGAATTGTCGATGGTTGCCAACAATCAGACTGTCTTCTTTTAGGTGGAGAGGTGCTTGACATAGTTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGGTTTCACTGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATAATGATTCATGGGAAGTCCCAGCTGTTTTCAAATGGATCCAAGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGACGAACTTTTAATATTGGTTATTGGGATGGTTCTTGTTGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

231

Amino Acids

24.64

Weight (kDa)

5.11

Isoelectric Point (pI)

30.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS	PF00586	69 - 162	1.6e-18	AIR synthase related protein, N-terminal domain
AIRS_C	PF02769	157 - 222	9e-11	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	607, 620
AcsI	RAATTY	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	229
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	607
AhdI	GACNNNNNGTC	1 cut(s)	115
AluBI	AGCT	5 cut(s)	59, 256, 375, 566, 599
AluI	AGCT	5 cut(s)	59, 256, 375, 566, 599
Alw26I	GTCTC	2 cut(s)	275, 643
AlwI	GGATC	2 cut(s)	607, 620
AoxI	GGCC	1 cut(s)	556
ApeKI	GCWGC	1 cut(s)	375
ApoI	RAATTY	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	126
AspA2I	CCTAGG	1 cut(s)	559
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	64, 218
AsuII	TTCGAA	1 cut(s)	37
AvrII	CCTAGG	1 cut(s)	559
BamHI	GGATCC	1 cut(s)	612
BbsI	GAAGAC	1 cut(s)	437
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	4 cut(s)	139, 227, 416, 671
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	2 cut(s)	275, 643
BfaI	CTAG	3 cut(s)	62, 540, 560
BfrI	CTTAAG	1 cut(s)	251
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	376
BlnI	CCTAGG	1 cut(s)	559
BlsI	GCNGC	1 cut(s)	377
Bme1390I	CCNGG	1 cut(s)	115
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmiI	GGNNCC	2 cut(s)	337, 614
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	628
BpiI	GAAGAC	1 cut(s)	437
BpmI	CTGGAG	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	115
BsaBI	GATNNNNATC	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	559
BsaWI	WCCGGW	2 cut(s)	49, 269
Bse8I	GATNNNNATC	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	559
BseGI	GGATG	1 cut(s)	682
BseJI	GATNNNNATC	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	362
BseYI	CCCAGC	1 cut(s)	595
BshFI	GGCC	1 cut(s)	558
BsiSI	CCGG	3 cut(s)	50, 114, 270
BslFI	GGGAC	1 cut(s)	578
BsmAI	GTCTC	2 cut(s)	275, 643
BsmBI	CGTCTC	1 cut(s)	643
BsmFI	GGGAC	1 cut(s)	578
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	558
Bso31I	GGTCTC	1 cut(s)	275
Bsp119I	TTCGAA	1 cut(s)	37
Bsp143I	GATC	3 cut(s)	208, 388, 612
BspANI	GGCC	1 cut(s)	558
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	337, 614
BspPI	GGATC	2 cut(s)	607, 620
BspT104I	TTCGAA	1 cut(s)	37
BspTI	CTTAAG	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	559
BssMI	GATC	3 cut(s)	208, 388, 612
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	559
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	622
BstACI	GRCGYC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	19, 258
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	682
BstKTI	GATC	3 cut(s)	211, 391, 615
BstMAI	GTCTC	2 cut(s)	275, 643
BstMBI	GATC	3 cut(s)	208, 388, 612
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 171, 180, 189
BstSCI	CCNGG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	1 cut(s)	612
BstXI	CCANNNNNNTGG	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	558
BtsCI	GGATG	1 cut(s)	682
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	2 cut(s)	19, 258
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	1 cut(s)	585
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	3 cut(s)	210, 390, 614
DpnII	GATC	3 cut(s)	208, 388, 612
DriI	GACNNNNNGTC	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	622
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	622
Eco130I	CCWWGG	1 cut(s)	559
Eco147I	AGGCCT	1 cut(s)	558
Eco31I	GGTCTC	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	559
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	1 cut(s)	588
FaiI	YATR	9 cut(s)	27, 87, 107, 279, 308, 473, 536, 576, 586
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	1 cut(s)	584
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	376
FokI	GGATG	1 cut(s)	689
Fsp4HI	GCNGC	1 cut(s)	376
FspBI	CTAG	3 cut(s)	62, 540, 560
GluI	GCNGC	1 cut(s)	376
GsaI	CCCAGC	1 cut(s)	599
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	3 cut(s)	50, 114, 270
HgaI	GACGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	588
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	46, 581
HpaII	CCGG	3 cut(s)	50, 114, 270
HphI	GGTGA	2 cut(s)	64, 218
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	3 cut(s)	14, 121, 439
Hpy188III	TCNNGA	1 cut(s)	333
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 171, 180, 189
HpyF3I	CTNAG	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	588
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	208, 388, 612
LmnI	GCTCC	2 cut(s)	335, 563
LpnPI	CCDG	9 cut(s)	63, 81, 127, 210, 283, 318, 498, 609, 609
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	3 cut(s)	62, 540, 560
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	3 cut(s)	210, 390, 614
MboI	GATC	3 cut(s)	208, 388, 612
MboII	GAAGA	4 cut(s)	51, 437, 639, 647
MflI	RGATCY	1 cut(s)	612
MluCI	AATT	3 cut(s)	135, 273, 414
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	9 cut(s)	155, 164, 173, 182, 210, 454, 479, 509, 613
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	2 cut(s)	252, 660
MspA1I	CMGCKG	1 cut(s)	599
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	3 cut(s)	50, 114, 270
MspR9I	CCNGG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	97
MwoI	GCNNNNNNNGC	4 cut(s)	146, 171, 180, 189
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	3 cut(s)	208, 388, 612
NlaIII	CATG	1 cut(s)	588
NlaIV	GGNNCC	2 cut(s)	337, 614
NmuCI	GTSAC	1 cut(s)	325
NspV	TTCGAA	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	558
PctI	GAATGC	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	581
PkrI	GCNGC	1 cut(s)	377
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PspFI	CCCAGC	1 cut(s)	595
PspN4I	GGNNCC	2 cut(s)	337, 614
PsuI	RGATCY	1 cut(s)	612
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	252, 660
SatI	GCNGC	1 cut(s)	376
Sau3AI	GATC	3 cut(s)	208, 388, 612
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	115
SfaNI	GCATC	1 cut(s)	628
SfuI	TTCGAA	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	3 cut(s)	135, 273, 414
SseBI	AGGCCT	1 cut(s)	558
SspI	AATATT	1 cut(s)	664
SspMI	CTAG	3 cut(s)	62, 540, 560
StuI	AGGCCT	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	1 cut(s)	443
TaqI	TCGA	3 cut(s)	37, 130, 420
TasI	AATT	3 cut(s)	135, 273, 414
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	2 cut(s)	252, 660
Tru9I	TTAA	2 cut(s)	252, 660
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	573
TspRI	CASTG	1 cut(s)	532
Vha464I	CTTAAG	1 cut(s)	251
XapI	RAATTY	1 cut(s)	273
XmaJI	CCTAGG	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	3 cut(s)	62, 540, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.